File: polymorphism.dat

package info (click to toggle)
libbio-variation-perl 1.7.5-3
  • links: PTS, VCS
  • area: main
  • in suites: bookworm, forky, sid, trixie
  • size: 444 kB
  • sloc: perl: 3,217; xml: 946; makefile: 2
file content (74 lines) | stat: -rw-r--r-- 2,564 bytes parent folder | download | duplicates (10)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
ID           M20132:(362)[c.+4G|A|T;c.+31C|A]; [E2|K|X;Q11|K]
Feature      DNA; 1.1
Feature        /label: point, transition
Feature        /proof: computed
Feature        /location: 4
Feature        /upflank: gaagattcagccaagctcaaggatg
Feature        /change: g|a
Feature        /dnflank: aagtgcagttagggctgggaagggt
Feature        /re_site: -BccI
Feature      DNA; 1.2
Feature        /label: point, transversion
Feature        /proof: computed
Feature        /location: 4
Feature        /upflank: gaagattcagccaagctcaaggatg
Feature        /change: g|t
Feature        /dnflank: aagtgcagttagggctgggaagggt
Feature        /re_site: -BccI
Feature      RNA; 1.1
Feature        /label: missense
Feature        /proof: experimental
Feature        /location: 4 (M20132::366)
Feature        /upflank: gaagattcagccaagctcaaggatg
Feature        /change: g|a
Feature        /dnflank: aagtgcagttagggctgggaagggt
Feature        /re_site: -BccI
Feature        /codon_table: 1
Feature        /codon: gaa|aaa; 1
Feature        /region: coding
Feature      RNA; 1.2
Feature        /label: nonsense
Feature        /proof: experimental
Feature        /location: 4 (M20132::366)
Feature        /upflank: gaagattcagccaagctcaaggatg
Feature        /change: g|t
Feature        /dnflank: aagtgcagttagggctgggaagggt
Feature        /re_site: -BccI
Feature        /codon_table: 1
Feature        /codon: gaa|taa; 1
Feature        /region: coding
Feature      AA; 1.1
Feature        /label: substitution, conservative
Feature        /proof: computed
Feature        /location: 2
Feature        /change: E|K
Feature      AA; 1.2
Feature        /label: truncation
Feature        /proof: computed
Feature        /location: 2
Feature        /change: E|*
Feature      DNA; 2
Feature        /label: point, transversion
Feature        /proof: computed
Feature        /location: 31
Feature        /upflank: gaagattcagccaagctcaaggatg
Feature        /change: c|a
Feature        /dnflank: aagtgcagttagggctgggaagggt
Feature        /re_site: -CviRI, -SfaNI
Feature      RNA; 2
Feature        /label: missense
Feature        /proof: experimental
Feature        /location: 31 (M20132::393)
Feature        /upflank: gaagattcagccaagctcaaggatg
Feature        /change: c|a
Feature        /dnflank: aagtgcagttagggctgggaagggt
Feature        /re_site: -CviRI, -SfaNI
Feature        /codon_table: 1
Feature        /codon: caa|aaa; 1
Feature        /region: coding
Feature      AA; 2
Feature        /label: substitution, conservative
Feature        /proof: computed
Feature        /location: 11
Feature        /change: Q|K
//