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cmake_minimum_required(VERSION 3.14)
project(biosoup VERSION 0.11.0
LANGUAGES CXX
DESCRIPTION "Biosoup is a c++ collection of header only data structures used for storage and logging in bioinformatics tools.")
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Wall -Wextra -pedantic")
set(CMAKE_CXX_STANDARD 11)
set(CMAKE_CXX_STANDARD_REQUIRED ON)
set(CMAKE_CXX_EXTENSIONS OFF)
set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY ${PROJECT_BINARY_DIR}/lib)
set(CMAKE_LIBRARY_OUTPUT_DIRECTORY ${PROJECT_BINARY_DIR}/lib)
set(CMAKE_RUNTIME_OUTPUT_DIRECTORY ${PROJECT_BINARY_DIR}/bin)
if (CMAKE_SOURCE_DIR STREQUAL PROJECT_SOURCE_DIR)
set(biosoup_main_project ON)
endif ()
option(biosoup_install "Generate install target" ${biosoup_main_project})
option(biosoup_build_tests "Build unit tests" ${biosoup_main_project})
if (biosoup_build_tests)
find_package(GTest 1.10.0 QUIET)
if (NOT GTest_FOUND)
include(FetchContent)
FetchContent_Declare(
googletest
GIT_REPOSITORY https://github.com/google/googletest
GIT_TAG release-1.10.0)
FetchContent_GetProperties(googletest)
if (NOT googletest_POPULATED)
FetchContent_Populate(googletest)
add_subdirectory(
${googletest_SOURCE_DIR}
${googletest_BINARY_DIR}
EXCLUDE_FROM_ALL)
add_library(GTest::Main ALIAS gtest_main)
endif ()
endif ()
endif ()
add_library(biosoup INTERFACE)
add_library(${PROJECT_NAME}::biosoup ALIAS biosoup)
target_include_directories(biosoup INTERFACE
$<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}/include>
$<INSTALL_INTERFACE:include>)
if (biosoup_install)
include(GNUInstallDirs)
include(CMakePackageConfigHelpers)
configure_package_config_file(
${CMAKE_CURRENT_SOURCE_DIR}/Config.cmake.in
${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME}Config.cmake
INSTALL_DESTINATION ${CMAKE_INSTALL_LIBDIR}/cmake/${PROJECT_NAME})
write_basic_package_version_file(
${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME}ConfigVersion.cmake
COMPATIBILITY SameMinorVersion ARCH_INDEPENDENT)
install(
TARGETS biosoup
EXPORT ${PROJECT_NAME}Targets)
install(
DIRECTORY include/biosoup
DESTINATION ${CMAKE_INSTALL_INCLUDEDIR})
install(
EXPORT ${PROJECT_NAME}Targets
NAMESPACE ${PROJECT_NAME}::
DESTINATION ${CMAKE_INSTALL_LIBDIR}/cmake/${PROJECT_NAME})
install(
FILES ${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME}Config.cmake
${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME}ConfigVersion.cmake
DESTINATION ${CMAKE_INSTALL_LIBDIR}/cmake/${PROJECT_NAME})
endif ()
if (biosoup_build_tests)
add_executable(biosoup_test
test/nucleic_acid_test.cpp
test/overlap_test.cpp
test/progress_bar_test.cpp
test/sequence_test.cpp
test/timer_test.cpp)
target_link_libraries(biosoup_test
biosoup
GTest::Main)
endif ()
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