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26/02/18 -*- Version 2.4.0 -*-
25/02/18 Julien Dutheil
* Removed all dynamic exception specification (gcc 7)
24/11/17 Julien Dutheil
* Fixed error in tajima83.
10/05/17 -*- Version 2.3.0 -*-
17/12/16 Julien Dutheil
* Improved PolymorphismSequenceContainer to count sequences when copying from a "standard" container
* Added conversion function betwenn PSC to "standard" SiteContainer objects.
* Added "hasOutgroup" function in PSC.
25/06/15 Julien Dutheil
* Sorted files in subdirectories
19/09/14 -*- Version 2.2.0 -*-
19/09/14 Julien Dutheil
* Big cleaning in SequenceStatistics, functions have been renamed for consistency.
07/03/13 -*- Version 2.1.0 -*-
06/05/13 Julien Dutheil
* Fixed bug #67
* Fixed bug #8
09/02/12 -*- Version 2.0.3 -*-
09/06/11 -*- Version 2.0.2 -*-
08/06/11 Benoît Nabholz
* Added Fst calculation from Hudson, Slatkin and Maddison 1992 (Genetics 132:153).
28/02/11 -*- Version 2.0.1 -*-
07/02/11 -*- Version 2.0.0 -*-
21/07/08 -*- Version 1.4.0 -*-
18/11/09 Sylain Gaillard
* Switching from pointer to reference in many methods arguments and return
values.
* Introducing std::auto_ptr when methods need to return pointer to new
object.
16/11/09 Sylvain Gaillard
* No more "using namespace" in header files.
21/07/09 Sylvain Gaillard
* Removed Coord and CoordsTools classes (move to Utils/Point2D and
Utils/Point2DTools)
* Code update to use Point2D class instead of Coord class
23/06/09 Julien Dutheil
* Code update for compatibility with seqlib. Changed pointers to refs when
retrieving sequences.
19/06/09 Sylvain Gaillard
* Removed all 'using namespace' statement from header files
18/06/09 Sylvain Gaillard
* Fix SequenceTools::getFrequencies call in SequenceStatistics
* Fix SequenceStatistics::getTransitionsTransversionsRatio
21/07/08 -*- Version 1.4.0 -*-
15/04/09 Sylvain Gaillard
* Moved to UTF8 encoding
* Fixed computations in Fu & Li D statistics
08/04/09 Sylvain Gaillard
* Fixed calls to Seq::SymbolListTools::getCounts
31/03/09 Sylvain Gaillard
* Fixed Doxygen documentation @author tags
* Fixed warnings in bpp::DarwinDon::write bpp::DarwinVarSingle::write and
bpp::MonolocusGenotypeTools::buildMonolocusGenotypeByAlleleKey
19/01/09 Sylvain Gaillard
* Fixed bug in PolymorphismSequenceContainerTools::getSelectedSequences now
set the sequence count properly.
16/01/09 Sylvain Gaillard
* Fixed method PolymorphismSequenceContainerTools::extractGroup which now
return the extracted group and not all groups but the extracted one.
08/01/09 Sylvain Gaillard
* New method sample in PolymorphismSequenceContainerTools.
* Extend main page doxygen documentation.
* A bit of cleaning.
07/01/09 Céline Scornavacca & Julien Dutheil
* Bug fixed in clone method of PolymorphismSequenceContainer.
21/07/08 -*- Version 1.3.1 -*-
10/11/08 Sylvain Gaillard
* Fixed a bug in DataSet::getGroupName().
21/07/08 -*- Version 1.3.0 -*-
09/04/08 Sylvain Gaillard
* Added DarwinDon and DarwinVarSingle output class.
04/04/08 Sylvain Gaillard
* Added MultiAlleleMonolocusGenotype and MonolocusGenotypeTools class.
* Added GeneMapperCsvExport input class.
01/04/08 Sylvain Gaillard
* Fixed bug in SequenceStatistics::DVH (thanks to Alicia).
18/01/08 -*- Version 1.2.0 -*-
12/01/08 Julien Dutheil
* Compatibility update: inclusion in namespace bpp + code update.
06/07/07 -*- Version 1.1.1 -*-
15/05/07 Julien Dutheil
* Compatibility update (NumCalc).
* PopGenLib does not depend anymore on PhylLib.
* Coord and Locality classes code improved.
28/08/06 -*- Version 1.1.0 -*-
21/06/06 Khalid Belkhir
* Nouvelles fonctionnalités pour les permutations.
* Ajout Fstat multilocus.
* Construction de matrices de distances.
* Correction de bugs
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