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%define _basename bpp-seq-omics
%define _version 2.2.0
%define _release 1
%define _prefix /usr
URL: http://biopp.univ-montp2.fr/
Name: %{_basename}
Version: %{_version}
Release: %{_release}
License: CECILL-2.0
Vendor: The Bio++ Project
Source: http://biopp.univ-montp2.fr/repos/sources/%{_basename}-%{_version}.tar.gz
Summary: Bio++ Sequence library: genomics components
Group: Development/Libraries/C and C++
Requires: bpp-core = %{_version}
Requires: bpp-seq = %{_version}
BuildRoot: %{_builddir}/%{_basename}-root
BuildRequires: cmake >= 2.6.0
BuildRequires: gcc-c++ >= 4.0.0
BuildRequires: libbpp-core2 = %{_version}
BuildRequires: libbpp-core-devel = %{_version}
BuildRequires: libbpp-seq9 = %{_version}
BuildRequires: libbpp-seq-devel = %{_version}
AutoReq: yes
AutoProv: yes
%description
This library contains the genomics components of the Bio++ sequence library.
It is part of the Bio++ project.
%package -n libbpp-seq-omics1
Summary: Bio++ Sequence library: genomics components
Group: Development/Libraries/C and C++
%description -n libbpp-seq-omics1
This library contains the genomics components of the Bio++ sequence library.
It is part of the Bio++ project.
%package -n libbpp-seq-omics-devel
Summary: Bio++ Sequence library: genomics components
Group: Development/Libraries/C and C++
Requires: libbpp-seq-omics1 = %{_version}
Requires: libbpp-seq9 = %{_version}
Requires: libbpp-seq-devel = %{_version}
Requires: libbpp-core2 = %{_version}
Requires: libbpp-core-devel = %{_version}
%description -n libbpp-seq-omics-devel
The libbpp-seq-omics-devel package contains the header files and static libraries for
building applications which use %{_basename}.
%prep
%setup -q
%build
CFLAGS="$RPM_OPT_FLAGS"
CMAKE_FLAGS="-DCMAKE_INSTALL_PREFIX=%{_prefix} -DBUILD_TESTING=OFF"
if [ %{_lib} == 'lib64' ] ; then
CMAKE_FLAGS="$CMAKE_FLAGS -DLIB_SUFFIX=64"
fi
cmake $CMAKE_FLAGS .
make
%install
make DESTDIR=$RPM_BUILD_ROOT install
%clean
rm -rf $RPM_BUILD_ROOT
%post -n libbpp-seq-omics1 -p /sbin/ldconfig
%post -n libbpp-seq-omics-devel
createGeneric() {
echo "-- Creating generic include file: $1.all"
#Make sure we run into subdirectories first:
dirs=()
for file in "$1"/*
do
if [ -d "$file" ]
then
# Recursion:
dirs+=( "$file" )
fi
done
for dir in ${dirs[@]}
do
createGeneric $dir
done
#Now list all files, including newly created .all files:
if [ -f $1.all ]
then
rm $1.all
fi
dir=`basename $1`
for file in "$1"/*
do
if [ -f "$file" ] && ( [ "${file##*.}" == "h" ] || [ "${file##*.}" == "all" ] )
then
file=`basename $file`
echo "#include \"$dir/$file\"" >> $1.all
fi
done;
}
# Actualize .all files
createGeneric %{_prefix}/include/Bpp
exit 0
%preun -n libbpp-seq-omics-devel
removeGeneric() {
if [ -f $1.all ]
then
echo "-- Remove generic include file: $1.all"
rm $1.all
fi
for file in "$1"/*
do
if [ -d "$file" ]
then
# Recursion:
removeGeneric $file
fi
done
}
# Actualize .all files
removeGeneric %{_prefix}/include/Bpp
exit 0
%postun -n libbpp-seq-omics1 -p /sbin/ldconfig
%postun -n libbpp-seq-omics-devel
createGeneric() {
echo "-- Creating generic include file: $1.all"
#Make sure we run into subdirectories first:
dirs=()
for file in "$1"/*
do
if [ -d "$file" ]
then
# Recursion:
dirs+=( "$file" )
fi
done
for dir in ${dirs[@]}
do
createGeneric $dir
done
#Now list all files, including newly created .all files:
if [ -f $1.all ]
then
rm $1.all
fi
dir=`basename $1`
for file in "$1"/*
do
if [ -f "$file" ] && ( [ "${file##*.}" == "h" ] || [ "${file##*.}" == "all" ] )
then
file=`basename $file`
echo "#include \"$dir/$file\"" >> $1.all
fi
done;
}
# Actualize .all files
createGeneric %{_prefix}/include/Bpp
exit 0
%files -n libbpp-seq-omics1
%defattr(-,root,root)
%doc AUTHORS.txt COPYING.txt INSTALL.txt ChangeLog
%{_prefix}/%{_lib}/lib*.so.*
%files -n libbpp-seq-omics-devel
%defattr(-,root,root)
%doc AUTHORS.txt COPYING.txt INSTALL.txt ChangeLog
%{_prefix}/%{_lib}/lib*.so
%{_prefix}/%{_lib}/lib*.a
%{_prefix}/include/*
%changelog
* Mon Sep 22 2014 Julien Dutheil <julien.dutheil@univ-montp2.fr> 2.2.0-1
- New statistics, including sequence diversity estimators
- Several bugs and memory leaks fixed.
* Wed Mar 06 2013 Julien Dutheil <julien.dutheil@univ-montp2.fr> 2.1.0-1
- Maf to VCF tool added as a MafIterator.
* Tue Nov 06 2012 Julien Dutheil <julien.dutheil@univ-montp2.fr> 2.0.3-1
- First draft of the spec file
|
