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# CMake script for Bio++ Sequence-Omics library
# Authors:
# Sylvain Gaillard
# Julien Dutheil
# Francois Gindraud (2017)
# Created: 30/07/2012
cmake_minimum_required (VERSION 2.8.11)
project (bpp-seq-omics CXX)
# Compile options
add_compile_options(-std=c++11 -Wall -Weffc++ -Wshadow -Wconversion)
IF(NOT CMAKE_BUILD_TYPE)
SET(CMAKE_BUILD_TYPE RelWithDebInfo CACHE STRING
"Choose the type of build, options are: None Debug Release RelWithDebInfo MinSizeRel."
FORCE)
ENDIF(NOT CMAKE_BUILD_TYPE)
IF(NOT NO_DEP_CHECK)
SET(NO_DEP_CHECK FALSE CACHE BOOL
"Disable dependencies check for building distribution only."
FORCE)
ENDIF(NOT NO_DEP_CHECK)
IF(NO_DEP_CHECK)
MESSAGE("-- Dependencies checking disabled. Only distribution can be built.")
ELSE(NO_DEP_CHECK)
# Libtool-like version number
# CURRENT:REVISION:AGE => file.so.(C-A).A.R
# current: The most recent interface number that this library implements.
# revision: The implementation number of the current interface.
# age: The difference between the newest and oldest interfaces that this
# library implements.
# In other words, the library implements all the interface numbers in the
# range from number current - age to current.
SET(${PROJECT_NAME}_VERSION_CURRENT "3")
SET(${PROJECT_NAME}_VERSION_REVISION "0")
SET(${PROJECT_NAME}_VERSION_AGE "0")
# Effective version number computation
MATH(EXPR ${PROJECT_NAME}_VERSION_MAJOR "${${PROJECT_NAME}_VERSION_CURRENT} - ${${PROJECT_NAME}_VERSION_AGE}")
SET(${PROJECT_NAME}_VERSION_MINOR ${${PROJECT_NAME}_VERSION_AGE})
SET(${PROJECT_NAME}_VERSION_PATCH ${${PROJECT_NAME}_VERSION_REVISION})
SET(${PROJECT_NAME}_VERSION "${${PROJECT_NAME}_VERSION_MAJOR}.${${PROJECT_NAME}_VERSION_MINOR}.${${PROJECT_NAME}_VERSION_PATCH}")
set (PROJECT_VERSION ${${PROJECT_NAME}_VERSION})
# Find dependencies (add install directory to search)
if (CMAKE_INSTALL_PREFIX)
set (CMAKE_PREFIX_PATH "${CMAKE_INSTALL_PREFIX}" ${CMAKE_PREFIX_PATH})
endif (CMAKE_INSTALL_PREFIX)
include (GNUInstallDirs)
find_package (bpp-seq 12.0.0 REQUIRED)
# CMake package
set (cmake-package-location ${CMAKE_INSTALL_LIBDIR}/cmake/${PROJECT_NAME})
include (CMakePackageConfigHelpers)
configure_package_config_file (
package.cmake.in
${CMAKE_CURRENT_BINARY_DIR}/package.cmake
INSTALL_DESTINATION ${cmake-package-location}
)
write_basic_package_version_file (
${CMAKE_CURRENT_BINARY_DIR}/package-version.cmake
VERSION ${PROJECT_VERSION}
COMPATIBILITY SameMajorVersion
)
install (FILES ${CMAKE_CURRENT_BINARY_DIR}/package.cmake DESTINATION ${cmake-package-location}
RENAME ${PROJECT_NAME}-config.cmake)
install (FILES ${CMAKE_CURRENT_BINARY_DIR}/package-version.cmake DESTINATION ${cmake-package-location}
RENAME ${PROJECT_NAME}-config-version.cmake)
# Define the libraries
add_subdirectory (src)
# Doxygen
FIND_PACKAGE(Doxygen)
IF (DOXYGEN_FOUND)
ADD_CUSTOM_TARGET (apidoc cp Doxyfile ${CMAKE_BINARY_DIR}/Doxyfile-build
COMMAND echo "OUTPUT_DIRECTORY=${CMAKE_BINARY_DIR}" >> ${CMAKE_BINARY_DIR}/Doxyfile-build
COMMAND ${DOXYGEN_EXECUTABLE} ${CMAKE_BINARY_DIR}/Doxyfile-build
WORKING_DIRECTORY ${CMAKE_SOURCE_DIR})
ADD_CUSTOM_TARGET (apidoc-stable cp Doxyfile ${CMAKE_BINARY_DIR}/Doxyfile-stable
COMMAND echo "OUTPUT_DIRECTORY=${CMAKE_BINARY_DIR}" >> ${CMAKE_BINARY_DIR}/Doxyfile-stable
COMMAND echo "HTML_HEADER=header.html" >> ${CMAKE_BINARY_DIR}/Doxyfile-stable
COMMAND ${DOXYGEN_EXECUTABLE} ${CMAKE_BINARY_DIR}/Doxyfile-stable
WORKING_DIRECTORY ${CMAKE_SOURCE_DIR})
ENDIF (DOXYGEN_FOUND)
ENDIF(NO_DEP_CHECK)
# Packager
SET(CPACK_PACKAGE_NAME "libbpp-seq-omics")
SET(CPACK_PACKAGE_VENDOR "Bio++ Development Team")
SET(CPACK_PACKAGE_VERSION "2.4.1")
SET(CPACK_PACKAGE_VERSION_MAJOR "2")
SET(CPACK_PACKAGE_VERSION_MINOR "4")
SET(CPACK_PACKAGE_VERSION_PATCH "1")
SET(CPACK_PACKAGE_DESCRIPTION_SUMMARY "The Bio++ Sequence-Omics library")
SET(CPACK_RESOURCE_FILE_LICENSE "${CMAKE_SOURCE_DIR}/COPYING.txt")
SET(CPACK_RESOURCE_FILE_AUTHORS "${CMAKE_SOURCE_DIR}/AUTHORS.txt")
SET(CPACK_RESOURCE_FILE_INSTALL "${CMAKE_SOURCE_DIR}/INSTALL.txt")
SET(CPACK_SOURCE_GENERATOR "TGZ")
# /!\ This assumes that an external build is used
SET(CPACK_SOURCE_IGNORE_FILES
"/build/"
"/html/"
"/BppSeqOmics.tag"
"/\\\\.git/"
"/\\\\.gitignore"
${CPACK_SOURCE_IGNORE_FILES}
)
SET(CPACK_SOURCE_PACKAGE_FILE_NAME "${CMAKE_PROJECT_NAME}-${CPACK_PACKAGE_VERSION_MAJOR}.${CPACK_PACKAGE_VERSION_MINOR}.${CPACK_PACKAGE_VERSION_PATCH}")
SET(CPACK_DEBSOURCE_PACKAGE_FILE_NAME "lib${CMAKE_PROJECT_NAME}_${CPACK_PACKAGE_VERSION_MAJOR}.${CPACK_PACKAGE_VERSION_MINOR}.${CPACK_PACKAGE_VERSION_PATCH}.orig")
INCLUDE(CPack)
#This adds the 'dist' target
ADD_CUSTOM_TARGET(dist COMMAND ${CMAKE_MAKE_PROGRAM} package_source)
IF(NOT NO_DEP_CHECK)
IF (UNIX)
#This creates rpm packages:
ADD_CUSTOM_TARGET(rpm rpmbuild -ta ${CPACK_SOURCE_PACKAGE_FILE_NAME}.tar.gz)
ADD_DEPENDENCIES(rpm dist)
ENDIF()
SET(CTEST_UPDATE_TYPE git)
SET(UPDATE_COMMAND "git")
SET(UPDATE_OPTIONS "")
# Tests
enable_testing ()
include (CTest)
if (BUILD_TESTING)
add_subdirectory (test)
endif (BUILD_TESTING)
ENDIF(NOT NO_DEP_CHECK)
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