libbpp-seq (2.4.1-13) unstable; urgency=medium

  * Since every GCC version bump ends up in a bug caused by the need to
    update symbols files we stop providing symbols for this library
    Closes: #1075153
  * lintian-override for no-symbols-control-file

 -- Andreas Tille <tille@debian.org>  Wed, 07 Aug 2024 10:57:57 +0200

libbpp-seq (2.4.1-12) unstable; urgency=medium

  * Team upload.
  * Silence another lintian warning
  * d/patches/spelling: forward upstream
  * d/patches/unforce-cxxflags.patch: improve and forward upstream.

 -- Michael R. Crusoe <crusoe@debian.org>  Mon, 25 Mar 2024 19:38:05 +0100

libbpp-seq (2.4.1-11) unstable; urgency=medium

  [ Dann Frazier ]
  * Drop hard-coded dependency on libbpp-core4
    Closes: #1067586

  [ Andreas Tille ]
  * Lintian-overrides for version-substvar-for-external-package

 -- Andreas Tille <tille@debian.org>  Mon, 25 Mar 2024 11:30:15 +0100

libbpp-seq (2.4.1-10.1) unstable; urgency=medium

  * Non-maintainer upload.
  * Rename libraries for 64-bit time_t transition.  Closes: #1062240

 -- Lukas Märdian <slyon@debian.org>  Thu, 29 Feb 2024 10:13:25 +0000

libbpp-seq (2.4.1-10) unstable; urgency=medium

  * Team upload.
  * Standards-Version: 4.6.2 (routine-update)
  * Update symbols for gcc-13. Closes: #1037721, #1042204
  * d/patches/spelling: fix a typo
  * d/control: Use ${devlibs:Depends} for the -dev package.

 -- Michael R. Crusoe <crusoe@debian.org>  Sun, 13 Aug 2023 13:21:18 +0200

libbpp-seq (2.4.1-9) unstable; urgency=medium

  * Fix watch file

 -- Andreas Tille <tille@debian.org>  Mon, 28 Nov 2022 18:00:15 +0100

libbpp-seq (2.4.1-8) unstable; urgency=medium

  * Adapt symbols to gcc-12
    Closes: #1012971
  * Standards-Version: 4.6.1 (routine-update)

 -- Andreas Tille <tille@debian.org>  Sun, 24 Jul 2022 16:06:08 +0200

libbpp-seq (2.4.1-7) unstable; urgency=medium

  * Really fix symbols file

 -- Andreas Tille <tille@debian.org>  Fri, 22 Oct 2021 07:26:58 +0200

libbpp-seq (2.4.1-6) unstable; urgency=medium

  * Fix watchfile to detect new versions on github
  * Standards-Version: 4.6.0 (routine-update)
  * Fix ftbfs with gcc-11
    Closes: #984094

 -- Andreas Tille <tille@debian.org>  Mon, 11 Oct 2021 10:35:48 +0200

libbpp-seq (2.4.1-5) unstable; urgency=medium

  * Standards-Version: 4.5.0 (routine-update)
  * debhelper-compat 13 (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
    Repository-Browse.
  * Refer to specific version of license GPL-2+.
  * Remove obsolete fields Contact, Name from debian/upstream/metadata (already
    present in machine-readable debian/copyright).
  * Update symbols for gcc-10
    Closes: #957428

 -- Andreas Tille <tille@debian.org>  Thu, 23 Jul 2020 11:33:45 +0200

libbpp-seq (2.4.1-4) unstable; urgency=medium

  * Rebuild for new version of gcc to fix symbols
    Closes: #925736
  * debhelper-compat 12
  * Standards-Version: 4.4.0
  * Set upstream metadata fields: Contact, Name.

 -- Andreas Tille <tille@debian.org>  Tue, 20 Aug 2019 16:07:58 +0200

libbpp-seq (2.4.1-3) unstable; urgency=medium

  * Rebuild for new version of gcc to fix symbols
    Closes: #923954
  * Standards-Version: 4.3.0

 -- Andreas Tille <tille@debian.org>  Thu, 07 Mar 2019 18:56:16 +0100

libbpp-seq (2.4.1-2) unstable; urgency=medium

  [ Jelmer Vernooij ]
  * Use secure copyright file specification URI.
  * Trim trailing whitespace.

  [ Andreas Tille ]
  * Fix symbols file
    Closes: #915342
  * Standards-Version: 4.2.1
  * Remove trailing whitespace in debian/copyright

 -- Andreas Tille <tille@debian.org>  Mon, 03 Dec 2018 08:15:45 +0100

libbpp-seq (2.4.1-1) unstable; urgency=medium

  [ Julien Dutheil ]
  * New upstream version
    Closes: #897784

  [ Andreas Tille ]
  * Standards-Version: 4.2.0

 -- Julien Dutheil <julien.dutheil@univ-montp2.fr>  Sun, 19 Aug 2018 11:45:47 +0200

libbpp-seq (2.4.0-2) unstable; urgency=medium

  [ Julien Dutheil ]
  * Provide symbols file only for amd64

  [ Andreas Tille ]
  * Provide full license text of CeCILL license

 -- Julien Dutheil <julien.dutheil@univ-montp2.fr>  Sun, 08 Apr 2018 08:04:59 +0200

libbpp-seq (2.4.0-1) unstable; urgency=medium

  [ Julien Dutheil ]
  * New upstream version

  [ Andreas Tille ]
  * Add symbols file

 -- Andreas Tille <tille@debian.org>  Sun, 25 Mar 2018 14:14:44 +0100

libbpp-seq (2.3.2-1) unstable; urgency=medium

  [ Julien Dutheil ]
  * New upstream version

  [ Andreas Tille ]
  * Standards-Version: 4.1.3
  * cme fix dpkg-control
  * debhelper 11

 -- Julien Dutheil <julien.dutheil@univ-montp2.fr>  Mon, 05 Feb 2018 17:36:38 +0200

libbpp-seq (2.3.1-8) unstable; urgency=medium

  * Rebuild with gcc-7
  * Standards-Version: 4.0.1

 -- Andreas Tille <tille@debian.org>  Wed, 23 Aug 2017 19:38:40 +0200

libbpp-seq (2.3.1-7) unstable; urgency=medium

  [ Julien Dutheil ]
  * Make tests work on 32 bits archs (enabled position independent code).
  * Do not override debian default CXX flags.

 -- Julien Dutheil <julien.dutheil@univ-montp2.fr>  Wed, 09 Aug 2017 15:54:52 +0200

libbpp-seq (2.3.1-6) unstable; urgency=medium

  * Increased timeout threshold for Bowker test to pass on all arch.
  * Removed postins scripts.

 -- Julien Dutheil <julien.dutheil@univ-montp2.fr>  Mon, 17 Jul 2017 22:29:29 +0200

libbpp-seq (2.3.1-5) unstable; urgency=medium

  [ Julien Dutheil ]
  * Removed unused class VectorProbabilisticSiteContainer

  [ Andreas Tille ]
  * debhelper 10

 -- Julien Dutheil <julien.dutheil@univ-montp2.fr>  Thu, 13 Jul 2017 08:52:31 +0200

libbpp-seq (2.3.1-4) unstable; urgency=medium

  * do not install broken header (Thanks for the patch to Steve Langasek
    <steve.langasek@canonical.com>)
    Closes: #866069
  * d-shlibs (>= 0.80) contains needed override

 -- Andreas Tille <tille@debian.org>  Tue, 27 Jun 2017 08:35:18 +0200

libbpp-seq (2.3.1-3) unstable; urgency=medium

  * cmake files belong to /usr/lib/$(DEB_HOST_MULTIARCH)
    Closes: #865529
  * hardening=+all
  * do not ignore test failures
  * Standards-Version: 4.0.0 (no changes needed)

 -- Andreas Tille <tille@debian.org>  Thu, 22 Jun 2017 21:52:59 +0200

libbpp-seq (2.3.1-2) unstable; urgency=medium

  * Make sure cmake files will be installed also on i386

 -- Andreas Tille <tille@debian.org>  Thu, 22 Jun 2017 07:58:04 +0200

libbpp-seq (2.3.1-1) unstable; urgency=medium

  * New upstream version
  * d/watch: point to github

 -- Andreas Tille <tille@debian.org>  Tue, 13 Jun 2017 13:35:29 +0200

libbpp-seq (2.2.0-1) unstable; urgency=medium

  * New upstream version
  * Packaging moved to Git
  * Better description
  * Team maintenance in Debian Med team
  * Add watch file
  * debhelper 9
  * DEP5
  * short dh rules file using d-shlibs
  * Library transition
    Closes: #791099

 -- Andreas Tille <tille@debian.org>  Wed, 13 Apr 2016 15:17:21 +0200

libbpp-seq (2.1.0-1) unstable; urgency=low

  * 'omics' tools now in bpp-seq-omics
  * Extended BppO support
  * StateProperties renamed to AlphabetIndex

 -- Julien Dutheil <julien.dutheil@univ-montp2.fr>  Tue, 05 Mar 2013 14:31:00 +0100

libbpp-seq (2.0.3-1) unstable; urgency=low

  * Bugs fixed in maf parser + new iterators
  * Added support for GFF
  * Added support for FastQ
  * Several bugs fixed

 -- Julien Dutheil <julien.dutheil@univ-montp2.fr>  Thu, 09 Feb 2012 14:00:00 +0100

libbpp-seq (2.0.2-1) unstable; urgency=low

  * RFP: Bio++ -- The Bio++ bioinformatics libraries. (Closes: #616373).
  * Packages are now non-native.
  * Bugs fixed in maf parser.

 -- Julien Dutheil <julien.dutheil@univ-montp2.fr>  Thu, 09 Jun 2011 11:00:00 +0100

libbpp-seq (2.0.1) unstable; urgency=low

  * Fixed copyright and rules file.

 -- Julien Dutheil <julien.dutheil@univ-montp2.fr>  Mon, 28 Feb 2011 09:00:00 +0100

libbpp-seq (2.0.0) unstable; urgency=low

  * New source files organization.
  * More NGS tools: sequence annotations, quality scores, file parsers, etc.

 -- Julien Dutheil <julien.dutheil@univ-montp2.fr>  Mon, 07 Feb 2011 09:00:00 +0100

libbpp-seq (1.7.0) unstable; urgency=low

  * Several bug fixed. Compilation with -Weffc++.
  * New compressed sites container.
  * Improved security by changing several pointers to references.

 -- Julien Dutheil <julien.dutheil@univ-montp2.fr>  Thu, 25 Mar 2010 10:02:50 +0100

libbpp-seq (1.6.0) unstable; urgency=low

  * New support for Nexus sequence files.
  * Update for version 1.8 of Bio++.

 -- Julien Dutheil <jdutheil@birc.au.dk>  Wed, 10 Jun 2009 11:28:58 +0100

libbpp-seq (1.5.0) unstable; urgency=low

  * Several bugs fixed, new Phred sequence format, speed improvements.

 -- Julien Dutheil <jdutheil@birc.au.dk>  Thu, 11 Dec 2008 12:21:37 +0100

libbpp-seq (1.4.1) unstable; urgency=low

  * Initial Release.

 -- Julien Dutheil <jdutheil@birc.au.dk>  Mon, 21 Jul 2008 15:17:26 +0200