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/*
pack_c.c: (de)compress diffraction image files
Copyright (C) 1995 Jan P Abrahams
This library is free software: you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public License
version 3, modified in accordance with the provisions of the
license to address the requirements of UK law.
You should have received a copy of the modified GNU Lesser General
Public License along with this library. If not, copies may be
downloaded from http://www.ccp4.ac.uk/ccp4license.php
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU Lesser General Public License for more details.
*/
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include "pack_c.h"
/* pack_c.c, version 2 (backwards compatible with earlier versions)...
JPA, 26 June 1995
jpa@mrc-lmb.cam.ac.uk
This file contains functions capable of compressing and decompressing
images. It is especially suited for X-ray diffraction patterns, or other
image formats in which orthogonal pixels contain "grey-levels" and
vary smoothly accross the image. Clean images measured by a MAR-research
image plate scanner containing two bytes per pixel can be compressed by
a factor of 3.5 to 4.5 .
Since the images are encoded in a byte-stream, there should be no problem
concerening big- or little ended machines: both will produce an identical
packed image.
Compression is achieved by first calculating the differences between every
pixel and the truncated value of four of its neighbours. For example:
the difference for a pixel at img[x, y] is:
img[x, y] - (int) (img[x-1, y-1] +
img[x-1, y] +
img[x-1, y+1] +
img[x, y-1]) / 4
After calculating the differences, they are encoded in a packed array. A
packed array consists of consequitive chunks which have the following format:
- Three bits containing the logarithm base 2 of the number of pixels encoded
in the chunk.
- Three bits defining the number of bits used to encode one element of the
chunk. The value of these three bits is used as index in a lookup table
to get the actual number of bits of the elements of the chunk.
Note: in version 2, there are four bits in this position!! This allows
more efficient packing of synchrotron data! The routines in this
sourcefile are backwards compatible.
JPA, 26 June 1995
- The truncated pixel differences.
To compress an image, call pack_wordimage_c() or pack_longimage_c(). These
will append the packed image to any header information already written to
disk (take care that the file containing this information is closed before
calling). To decompress an image, call readpack_word_c() or
readpack_long_c(). These functions will find the start of the packed image
themselves, irrespective of the header format.
In order to provide an interface to fortran programs, the functions
pack_wordimage_f(), pack_longimage_f(), read_wordimage_f() and
read_long_image_f() are provided. They are called by the fortran subroutines
PACK_WORDIMAGE, PACK_LONGIMAGE, READPACK_WORD, and READPACK_LONG, which
can be found in the accompanying sourcefile "pack_f.f".
Jan Pieter Abrahams, 6 Jan 1993 */
/******************************************************************************/
/* Some fortran compilers require c-functions to end with an underscore. */
#if defined(_AIX) || defined (___AIX) || defined(__hpux)
/* no underscore by default */
#else
# if defined (VMS) || defined (vms) || defined (__vms) || defined (__VMS) || defined(_MSC_VER)
# define pack_wordimage_f PACK_WORDIMAGE_F
# define v2pack_wordimage_f V2PACK_WORDIMAGE_F
# define pack_longimage_f PACK_LONGIMAGE_F
# define v2pack_longimage_f V2PACK_LONGIMAGE_F
# define readpack_word_f READPACK_WORD_F
# define readpack_long_f READPACK_LONG_F
# define mirror_wordimage MIRROR_WORDIMAGE
# define mirror_longimage MIRROR_LONGIMAGE
# define imsiz_f IMSIZ_F
# else
# define pack_wordimage_f pack_wordimage_f_
# define v2pack_wordimage_f v2pack_wordimage_f_
# define pack_longimage_f pack_longimage_f_
# define v2pack_longimage_f v2pack_longimage_f_
# define readpack_word_f readpack_word_f_
# define readpack_long_f readpack_long_f_
# define mirror_wordimage mirror_wordimage_
# define mirror_longimage mirror_longimage_
# define imsiz_f imsiz_f_
# endif
#endif
/******************************************************************************/
/* Prototypes of the functions in this sourcefile, as required by the ANSI
standard. The pack_c.h file contains the functions other routines might
call. Here are functions which will are not really usefull for image
processing programmes, and which are used locally in this file. Also
front-end fortran callable C-functions are not included in the pack_c.h
file. */
#if defined (PROTOTYPE)
/* Functions required for packing: */
void pack_wordimage_f(WORD *img, LONG *x, LONG *y, LONG *filename);
/* Fortran frontend of pack_wordimage_c. Because the way in which fortran
passes strings is not defined, it passes the filename in which the
packed image should be stored as an array of LONGs. */
void v2pack_wordimage_f(WORD *img, LONG *x, LONG *y, LONG *filename);
/* Fortran frontend of pack_wordimage_c. Because the way in which fortran
passes strings is not defined, it passes the filename in which the
packed image should be stored as an array of LONGs. This function generates
Version 2 images! */
void pack_longimage_f(LONG *img, LONG *x, LONG *y, LONG *filename);
/* Fortran frontend of pack_longimage_c. Because the way in which fortran
passes strings is not defined, it passes the filename in which the
packed image should be stored as an array of LONGs. */
void v2pack_longimage_f(LONG *img, LONG *x, LONG *y, LONG *filename);
/* Fortran frontend of pack_longimage_c. Because the way in which fortran
passes strings is not defined, it passes the filename in which the
packed image should be stored as an array of LONGs. This function generates
Version 2 images! */
void pack_wordimage_c(WORD *img, int x, int y, char *filename);
/* Pack image 'img', containing 'x * y' WORD-sized pixels into 'filename'.
Opens file and wraps pack_wordimage_copen() */
void pack_wordimage_copen(WORD *img, int x, int y, FILE *packfile);
/* Pack image 'img', containing 'x * y' WORD-sized pixels into open file
'packfile'. */
void pack_longimage_c(LONG *img, int x, int y, char *filename);
/* Pack image 'img', containing 'x * y' LONG-sized pixels into 'filename'.
Opens file and wraps pack_long_image_copen()*/
void pack_longimage_copen(LONG *img, int x, int y, FILE *packfile);
/* Pack image 'img', containing 'x * y' LONG-sized pixels into open file
'packfile'. */
LONG *diff_words(WORD *img, int x, int y, LONG *diffs, LONG done);
/* Calculates the difference of WORD-sized pixels of an image with the
truncated mean value of four of its neighbours. 'x' is the number of fast
coordinates of the image 'img', 'y' is the number of slow coordinates,
'diffs' will contain the differences, 'done' defines the index of the pixel
where calculating the differences should start. A pointer to the last
difference is returned. Maximally DIFFBUFSIZ differences are returned in
'diffs'.*/
LONG *diff_longs(LONG *img, int x, int y, LONG *diffs, LONG done);
/* Calculates the difference of LONG-sized pixels of an image with the
truncated mean value of four of its neighbours. 'x' is the number of fast
coordinates of the image 'img', 'y' is the number of slow coordinates,
'diffs' will contain the differences, 'done' defines the index of the pixel
where calculating the differences should start. A pointer to the last
difference is returned. Maximally DIFFBUFSIZ differences are returned in
'diffs'.*/
int bits(LONG *chunk, int n);
/* Returns the number of bits neccesary to encode the longword-array 'chunk'
of size 'n' The size in bits of one encoded element can be 0, 4, 5, 6, 7,
8, 16 or 32. */
int v2bits(LONG *chunk, int n);
/* Returns the number of bits neccesary to encode the longword-array 'chunk'
of size 'n' The size in bits of one encoded element can be 0, 3, 4, 5, 6, 7,
8, 9, 10, 11, 12, 13, 14, 15, 16 or 32. */
void pack_chunk(LONG *lng, int nmbr, int bitsize, FILE *file);
/* Packs 'nmbr' LONGs starting at 'lng[0]' into a packed array of 'bitsize'
sized elements. If the internal buffer in which the array is packed is full,
it is flushed to 'file', making room for more of the packed array. If
('lng == NULL'), the buffer is flushed aswell. */
void v2pack_chunk(LONG *lng, int nmbr, int bitsize, FILE *file);
/* Packs 'nmbr' LONGs starting at 'lng[0]' into a packed array of 'bitsize'
sized elements. If the internal buffer in which the array is packed is full,
it is flushed to 'file', making room for more of the packed array. If
('lng == NULL'), the buffer is flushed aswell. This is a new function
included in version 2, but not existing in version 1! */
void pack_longs(LONG *lng, int n, BYTE **target, int *bit, int size);
/* Pack 'n' WORDS, starting with 'lng[0]' into the packed array 'target'. The
elements of such a packed array do not obey BYTE-boundaries, but are put one
behind the other without any spacing. Only the 'bitsiz' number of least
significant bits are used, the rest is truncated. The starting bit of
'target' is 'bit' (bits range from 0 to 7). After completion of
'pack_words()', both '**target' and '*bit' are updated and define the next
position in 'target' from where packing could continue. */
/* Functions required for unpacking: */
void readpack_word_f(WORD *img, LONG *filename);
/* Fortran frontend of readpack_word_c. Because the way in which fortran
passes strings is not defined, it passes the filename in which the
packed image should be stored as an array of LONGs. */
void readpack_long_f(LONG *img, LONG *filename);
/* Fortran frontend of readpack_long_c. Because the way in which fortran
passes strings is not defined, it passes the filename in which the
packed image should be stored as an array of LONGs. */
void unpack_word(FILE *packfile, int x, int y, WORD *img);
/* Unpacks a packed image into the WORD-array 'img'. The image is stored
in 'packfile'. The file should be properly positioned: the first BYTE
read is assumed to be the first BYTE of the packed image. */
void v2unpack_word(FILE *packfile, int x, int y, WORD *img);
/* Unpacks a packed image into the WORD-array 'img'. The image is stored
in 'packfile'. The file should be properly positioned: the first BYTE
read is assumed to be the first BYTE of the packed image. This function
reads Version 2 packed images! */
void unpack_long(FILE *packfile, int x, int y, LONG *img);
/* Unpacks a packed image into the LONG-array 'img'. The image is stored
in 'packfile'. The file should be properly positioned: the first BYTE
read is assumed to be the first BYTE of the packed image. */
void v2unpack_long(FILE *packfile, int x, int y, LONG *img);
/* Unpacks a packed image into the LONG-array 'img'. The image is stored
in 'packfile'. The file should be properly positioned: the first BYTE
read is assumed to be the first BYTE of the packed image. This function
reads Version 2 packed images! */
/* Function required to convert a WORD-array into a char array, required for
both compression and decompression if called from fortran. */
char *long_to_char(LONG *lng, char *string);
/* Shrinks an array of LONGs into an array of chars, used in order to translate
an encoded string array passed by fortran into a c-type string. Returns
'string'. */
void imsiz_f(LONG *filename, LONG *x, LONG *y);
/* Fortran frontend of imsiz_c. Because the way in which fortran
passes strings is not defined, it passes the filename in which the
packed image should be stored as an array of LONGs. */
/* Some other usefull functions for manipulating images. */
void mirror_wordimg(WORD *img, LONG *x, LONG *y);
/* Replaces img with its mirror by interchanging rows. '*x' is the fast index,
'*y' is the slow index. */
void mirror_longimg(LONG *img, LONG *x, LONG *y);
/* Replaces img with its mirror by interchanging rows. '*x' is the fast index,
'*y' is the slow index. */
#endif /* (PROTOTYPE) */
/******************************************************************************/
#if defined (PROTOTYPE)
void pack_wordimage_f(WORD *img, LONG *x, LONG *y, LONG *filename)
#else
void pack_wordimage_f(img, x, y, filename)
WORD *img;
LONG *x, *y, *filename;
#endif
/* Fortran frontend of pack_wordimage_c. Because the way in which fortran
passes strings is not defined, it passes the filename in which the
packed image should be stored as an array of LONGs. */
{ char c_filename[1024];
#if !defined (PROTOTYPE)
void pack_wordimage_c();
char *long_to_char();
#endif
pack_wordimage_c(img, (LONG) *x, (LONG) *y,
long_to_char(filename, c_filename));}
/******************************************************************************/
#if defined (PROTOTYPE)
void v2pack_wordimage_f(WORD *img, LONG *x, LONG *y, LONG *filename)
#else
void v2pack_wordimage_f(img, x, y, filename)
WORD *img;
LONG *x, *y, *filename;
#endif
/* Fortran frontend of pack_wordimage_c. Because the way in which fortran
passes strings is not defined, it passes the filename in which the
packed image should be stored as an array of LONGs. This function generates
Version 2 images!*/
{ char c_filename[1024];
#if !defined (PROTOTYPE)
void v2pack_wordimage_c();
char *long_to_char();
#endif
v2pack_wordimage_c(img, (LONG) *x, (LONG) *y,
long_to_char(filename, c_filename));}
/******************************************************************************/
#if defined (PROTOTYPE)
void pack_longimage_f(LONG *img, LONG *x, LONG *y, LONG *filename)
#else
void pack_longimage_f(img, x, y, filename)
LONG *img, *x, *y, *filename;
#endif
/* Fortran frontend of pack_longimage_c. Because the way in which fortran
passes strings is not defined, it passes the filename in which the
packed image should be stored as an array of LONGs. */
{ char c_filename[1024];
#if !defined (PROTOTYPE)
void pack_longimage_c();
char *long_to_char();
#endif
pack_longimage_c(img, (LONG) *x, (LONG) *y,
long_to_char(filename, c_filename));}
/******************************************************************************/
#if defined (PROTOTYPE)
void v2pack_longimage_f(LONG *img, LONG *x, LONG *y, LONG *filename)
#else
void v2pack_longimage_f(img, x, y, filename)
LONG *img, *x, *y, *filename;
#endif
/* Fortran frontend of pack_longimage_c. Because the way in which fortran
passes strings is not defined, it passes the filename in which the
packed image should be stored as an array of LONGs. */
{ char c_filename[1024];
#if !defined (PROTOTYPE)
void v2pack_longimage_c();
char *long_to_char();
#endif
v2pack_longimage_c(img, (LONG) *x, (LONG) *y,
long_to_char(filename, c_filename));}
/******************************************************************************/
#if defined (PROTOTYPE)
void pack_wordimage_copen(WORD *img, int x, int y, FILE *packfile)
#else
void pack_wordimage_copen(img, x, y, packfile)
WORD *img;
int x, y;
FILE *packfile;
#endif
/* Pack image 'img', containing 'x * y' WORD-sized pixels into 'filename'. */
{ int chunksiz, packsiz, nbits, next_nbits, tot_nbits;
LONG buffer[DIFFBUFSIZ];
LONG *diffs = buffer;
LONG *end = diffs - 1;
LONG done = 0;
#if !defined (PROTOTYPE)
LONG *diff_words();
int bits();
void pack_chunk();
#endif
fprintf(packfile, PACKIDENTIFIER, x, y);
while (done < (x * y))
{ end = diff_words(img, x, y, buffer, done);
done += (end - buffer) + 1;
diffs = buffer;
while (diffs <= end)
{ packsiz = 0;
chunksiz = 1;
nbits = bits(diffs, 1);
while (packsiz == 0)
{ if (end <= (diffs + chunksiz * 2))
packsiz = chunksiz;
else
{ next_nbits = bits(diffs + chunksiz, chunksiz);
tot_nbits = 2 * max(nbits, next_nbits);
if (tot_nbits >= (nbits + next_nbits + 6))
packsiz = chunksiz;
else
{ nbits = tot_nbits;
if (chunksiz == 64)
packsiz = 128;
else
chunksiz *= 2;}}}
pack_chunk(diffs, packsiz, nbits / packsiz, packfile);
diffs += packsiz;}}
pack_chunk(NULL, 0, 0, packfile);
}
#if defined (PROTOTYPE)
void pack_wordimage_c(WORD *img, int x, int y, char *filename)
#else
void pack_wordimage_c(img, x, y, filename)
WORD *img;
int x, y;
char *filename;
#endif
{
FILE *packfile = fopen(filename, "a");
if (packfile == NULL) {
fprintf(stderr,"The file %s cannot be created!\n ...giving up...\n",
filename);
exit(1);
} else {
pack_wordimage_copen(img, x, y, packfile);
fclose(packfile);
}
}
/******************************************************************************/
#if defined (PROTOTYPE)
void v2pack_wordimage_c(WORD *img, int x, int y, char *filename)
#else
void v2pack_wordimage_c(img, x, y, filename)
WORD *img;
int x, y;
char *filename;
#endif
/* Pack image 'img', containing 'x * y' WORD-sized pixels into 'filename'. */
{ int chunksiz, packsiz, nbits, next_nbits, tot_nbits;
LONG buffer[DIFFBUFSIZ];
LONG *diffs = buffer;
LONG *end = diffs - 1;
LONG done = 0;
FILE *packfile;
#if !defined (PROTOTYPE)
LONG *diff_words();
int v2bits();
void v2pack_chunk();
#endif
packfile = fopen(filename, "a");
if (packfile == NULL)
{ fprintf(stderr,"The file %s cannot be created!\n ...giving up...\n",
filename);
exit(1);}
else
{ fprintf(packfile, V2IDENTIFIER, x, y);
while (done < (x * y))
{ end = diff_words(img, x, y, buffer, done);
done += (end - buffer) + 1;
diffs = buffer;
while (diffs <= end)
{ packsiz = 0;
chunksiz = 1;
nbits = v2bits(diffs, 1);
while (packsiz == 0)
{ if (end <= (diffs + chunksiz * 2))
packsiz = chunksiz;
else
{ next_nbits = v2bits(diffs + chunksiz, chunksiz);
tot_nbits = 2 * max(nbits, next_nbits);
if (tot_nbits >= (nbits + next_nbits + 7))
packsiz = chunksiz;
else
{ nbits = tot_nbits;
if (chunksiz == 64)
packsiz = 128;
else
chunksiz *= 2;}}}
v2pack_chunk(diffs, packsiz, nbits / packsiz, packfile);
diffs += packsiz;}}
v2pack_chunk(NULL, 0, 0, packfile);
fclose(packfile);}}
/******************************************************************************/
#if defined (PROTOTYPE)
void pack_longimage_copen(LONG *img, int x, int y, FILE *packfile)
#else
void pack_longimage_copen(img, x, y, packfile)
LONG *img;
int x, y;
FILE *packfile;
#endif
/* Pack image 'img', containing 'x * y' LONG-sized pixels into 'filename'. */
{ int chunksiz, packsiz, nbits, next_nbits, tot_nbits;
LONG buffer[DIFFBUFSIZ];
LONG *diffs = buffer;
LONG *end = diffs - 1;
LONG done = 0;
#if !defined (PROTOTYPE)
LONG *diff_longs();
int bits();
void pack_chunk();
#endif
fprintf(packfile, PACKIDENTIFIER, x, y);
while (done < (x * y))
{ end = diff_longs(img, x, y, buffer, done);
done += (end - buffer) + 1;
diffs = buffer;
while (diffs <= end)
{ packsiz = 0;
chunksiz = 1;
nbits = bits(diffs, 1);
while (packsiz == 0)
{ if (end <= (diffs + chunksiz * 2))
packsiz = chunksiz;
else
{ next_nbits = bits(diffs + chunksiz, chunksiz);
tot_nbits = 2 * max(nbits, next_nbits);
if (tot_nbits >= (nbits + next_nbits + 6))
packsiz = chunksiz;
else
{ nbits = tot_nbits;
if (chunksiz == 64)
packsiz = chunksiz * 2;
else
chunksiz *= 2;}}}
pack_chunk(diffs, packsiz, nbits / packsiz, packfile);
diffs += packsiz;}}
pack_chunk(NULL, 0, 0, packfile);
}
#if defined (PROTOTYPE)
void pack_longimage_c(LONG *img, int x, int y, char *filename)
#else
void pack_longimage_c(img, x, y, filename)
LONG *img;
int x, y;
char *filename;
#endif
/* Pack image 'img', containing 'x * y' LONG-sized pixels into 'filename'. */
{
FILE *packfile = fopen(filename, "a");
if (packfile == NULL)
{ fprintf(stderr,"The file %s cannot be created!\n ...giving up...\n",
filename);
exit(1);}
else
{ pack_longimage_copen(img, x, y, packfile);
fclose(packfile);
}
}
/******************************************************************************/
#if defined (PROTOTYPE)
void v2pack_longimage_c(LONG *img, int x, int y, char *filename)
#else
void v2pack_longimage_c(img, x, y, filename)
LONG *img;
int x, y;
char *filename;
#endif
/* Pack image 'img', containing 'x * y' LONG-sized pixels into 'filename'. */
{ int chunksiz, packsiz, nbits, next_nbits, tot_nbits;
LONG buffer[DIFFBUFSIZ];
LONG *diffs = buffer;
LONG *end = diffs - 1;
LONG done = 0;
FILE *packfile;
#if !defined (PROTOTYPE)
LONG *diff_longs();
int v2bits();
void v2pack_chunk();
#endif
packfile = fopen(filename, "a");
if (packfile == NULL)
{ fprintf(stderr,"The file %s cannot be created!\n ...giving up...\n",
filename);
exit(1);}
else
{ fprintf(packfile, V2IDENTIFIER, x, y);
while (done < (x * y))
{ end = diff_longs(img, x, y, buffer, done);
done += (end - buffer) + 1;
diffs = buffer;
while (diffs <= end)
{ packsiz = 0;
chunksiz = 1;
nbits = v2bits(diffs, 1);
while (packsiz == 0)
{ if (end <= (diffs + chunksiz * 2))
packsiz = chunksiz;
else
{ next_nbits = v2bits(diffs + chunksiz, chunksiz);
tot_nbits = 2 * max(nbits, next_nbits);
if (tot_nbits >= (nbits + next_nbits + 7))
packsiz = chunksiz;
else
{ nbits = tot_nbits;
if (chunksiz == 64)
packsiz = chunksiz * 2;
else
chunksiz *= 2;}}}
v2pack_chunk(diffs, packsiz, nbits / packsiz, packfile);
diffs += packsiz;}}
v2pack_chunk(NULL, 0, 0, packfile);
fclose(packfile);}}
/******************************************************************************/
#if defined (PROTOTYPE)
LONG *diff_words(WORD *word, int x, int y, LONG *diffs, LONG done)
#else
LONG *diff_words(word, x, y, diffs, done)
WORD *word;
int x, y;
LONG *diffs, done;
#endif
/* Calculates the difference of WORD-sized pixels of an image with the
truncated mean value of four of its neighbours. 'x' is the number of fast
coordinates of the image 'img', 'y' is the number of slow coordinates,
'diffs' will contain the differences, 'done' defines the index of the pixel
where calculating the differences should start. A pointer to the last
difference is returned. Maximally DIFFBUFSIZ differences are returned in
'diffs'.*/
{ LONG i = 0;
LONG tot = x * y;
if (done == 0)
{ *diffs = word[0];
++diffs;
++done;
++i;}
while ((done <= x) && (i < DIFFBUFSIZ))
{ *diffs = word[done] - word[done - 1];
++diffs;
++done;
++i;}
while ((done < tot) && (i < DIFFBUFSIZ))
{ *diffs = word[done] - (word[done - 1] + word[done - x + 1] +
word[done - x] + word[done - x - 1] + 2) / 4;
++diffs;
++done;
++i;}
return(--diffs);}
/******************************************************************************/
#if defined (PROTOTYPE)
LONG *diff_longs(LONG *lng, int x, int y, LONG *diffs, LONG done)
#else
LONG *diff_longs(lng, x, y, diffs, done)
LONG *lng, *diffs, done;
int x, y;
#endif
/* Calculates the difference of LONG-sized pixels of an image with the
truncated mean value of four of its neighbours. 'x' is the number of fast
coordinates of the image 'img', 'y' is the number of slow coordinates,
'diffs' will contain the differences, 'done' defines the index of the pixel
where calculating the differences should start. A pointer to the last
difference is returned. Maximally DIFFBUFSIZ differences are returned in
'diffs'.*/
{ LONG i = 0, d;
LONG tot = x * y;
LONG huge = shift_left(1, 30);
if (done == 0)
{ *diffs = min(max(-huge, lng[0]), huge);
++diffs;
++done;
++i;}
while ((done <= x) && (i < DIFFBUFSIZ))
{ d = lng[done] - lng[done - 1];
*diffs = min(max(-huge, d), huge);
++diffs;
++done;
++i;}
while ((done < tot) && (i < DIFFBUFSIZ))
{ d = lng[done] - (lng[done - 1] + lng[done - x + 1] +
lng[done - x] + lng[done - x - 1] + 2) / 4;
*diffs = min(max(-huge, d), huge);
++diffs;
++done;
++i;}
return(--diffs);}
/******************************************************************************/
#if defined (PROTOTYPE)
int bits(LONG *chunk, int n)
#else
int bits(chunk, n)
LONG *chunk;
int n;
#endif
/* Returns the number of bits neccesary to encode the longword-array 'chunk'
of size 'n' The size in bits of one encoded element can be 0, 4, 5, 6, 7,
8, 16 or 32. */
{ int size, maxsize, i;
for (i = 1, maxsize = abs(chunk[0]); i < n; ++i)
maxsize = max(maxsize, abs(chunk[i]));
if (maxsize == 0)
size = 0;
else if (maxsize < 8)
size = 4 * n;
else if (maxsize < 16)
size = 5 * n;
else if (maxsize < 32)
size = 6 * n;
else if (maxsize < 64)
size = 7 * n;
else if (maxsize < 128)
size = 8 * n;
else if (maxsize < 32768)
size = 16 * n;
else
size = 32 * n;
return(size);}
/******************************************************************************/
#if defined (PROTOTYPE)
int v2bits(LONG *chunk, int n)
#else
int v2bits(chunk, n)
LONG *chunk;
int n;
#endif
/* Returns the number of bits neccesary to encode the longword-array 'chunk'
of size 'n' The size in bits of one encoded element can be 0, 3, 4, 5, 6, 7,
8, 9, 10, 11, 12, 13, 14, 15, 16 or 32. */
{ int size, maxsize, i;
for (i = 1, maxsize = abs(chunk[0]); i < n; ++i)
maxsize = max(maxsize, abs(chunk[i]));
if (maxsize == 0)
size = 0;
else if (maxsize < 4)
size = 3 * n;
else if (maxsize < 8)
size = 4 * n;
else if (maxsize < 16)
size = 5 * n;
else if (maxsize < 32)
size = 6 * n;
else if (maxsize < 64)
size = 7 * n;
else if (maxsize < 128)
size = 8 * n;
else if (maxsize < 256)
size = 9 * n;
else if (maxsize < 512)
size = 10 * n;
else if (maxsize < 1024)
size = 11 * n;
else if (maxsize < 2048)
size = 12 * n;
else if (maxsize < 4096)
size = 13 * n;
else if (maxsize < 8192)
size = 14 * n;
else if (maxsize < 16384)
size = 15 * n;
else if (maxsize < 32768)
size = 16 * n;
else
size = 32 * n;
return(size);}
/******************************************************************************/
#if defined (PROTOTYPE)
void pack_chunk(LONG *lng, int nmbr, int bitsize, FILE *packfile)
#else
void pack_chunk(lng, nmbr, bitsize, packfile)
LONG *lng;
int nmbr, bitsize;
FILE *packfile;
#endif
/* Packs 'nmbr' LONGs starting at 'lng[0]' into a packed array of 'bitsize'
sized elements. If the internal buffer in which the array is packed is full,
it is flushed to 'file', making room for more of the packed array. If
('lng == NULL'), the buffer is flushed aswell. */
{ static LONG bitsize_encode[33] = {0, 0, 0, 0, 1, 2, 3, 4, 5, 0, 0,
0, 0, 0, 0, 0, 6, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 7};
LONG descriptor[2], i, j;
static BYTE *buffer = NULL;
static BYTE *buffree = NULL;
static int bitmark;
#if !defined (PROTOTYPE)
void pack_longs();
#endif
if (buffer == NULL)
{ buffree = buffer = (BYTE *) malloc(PACKBUFSIZ);
bitmark = 0;}
if (lng != NULL)
{ for (i = nmbr, j = 0; i > 1; i /= 2, ++j);
descriptor[0] = j;
descriptor[1] = bitsize_encode[bitsize];
if ((buffree - buffer) > (PACKBUFSIZ - (130 * 4)))
{ fwrite(buffer, sizeof(BYTE), buffree - buffer, packfile);
buffer[0] = buffree[0];
buffree = buffer;}
pack_longs(descriptor, 2, &buffree, &bitmark, 3);
pack_longs(lng, nmbr, &buffree, &bitmark, bitsize);}
else
{ int len=buffree-buffer;
if (bitmark!=0) len++;
fwrite(buffer, sizeof(BYTE), len, packfile);
free((void *) buffer);
buffer = NULL;}}
/******************************************************************************/
#if defined (PROTOTYPE)
void v2pack_chunk(LONG *lng, int nmbr, int bitsize, FILE *packfile)
#else
void v2pack_chunk(lng, nmbr, bitsize, packfile)
LONG *lng;
int nmbr, bitsize;
FILE *packfile;
#endif
/* Packs 'nmbr' LONGs starting at 'lng[0]' into a packed array of 'bitsize'
sized elements. If the internal buffer in which the array is packed is full,
it is flushed to 'file', making room for more of the packed array. If
('lng == NULL'), the buffer is flushed aswell. This is a new function
included in version 2, but not existing in version 1! */
{ static LONG bitsize_encode[33] = {0, 0, 0, 1, 2, 3, 4, 5, 6, 7, 8,
9, 10, 11, 12, 13, 14, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 15};
LONG descriptor[2], i, j;
static BYTE *buffer = NULL;
static BYTE *buffree = NULL;
static int bitmark;
#if !defined (PROTOTYPE)
void pack_longs();
#endif
if (buffer == NULL)
{ buffree = buffer = (BYTE *) malloc(PACKBUFSIZ);
bitmark = 0;}
if (lng != NULL)
{ for (i = nmbr, j = 0; i > 1; i /= 2, ++j);
descriptor[0] = j;
descriptor[1] = bitsize_encode[bitsize];
if ((buffree - buffer) > (PACKBUFSIZ - (130 * 4)))
{ fwrite(buffer, sizeof(BYTE), buffree - buffer, packfile);
buffer[0] = buffree[0];
buffree = buffer;}
pack_longs(descriptor, 1, &buffree, &bitmark, 3);
pack_longs(descriptor + 1, 1, &buffree, &bitmark, 4);
pack_longs(lng, nmbr, &buffree, &bitmark, bitsize);}
else
{ int len=buffree-buffer;
if (bitmark!=0) len++;
fwrite(buffer, sizeof(BYTE), len, packfile);
free((void *) buffer);
buffer = NULL;}}
/******************************************************************************/
#if defined (PROTOTYPE)
void pack_longs(LONG *lng, int n, BYTE **target, int *bit, int size)
#else
void pack_longs(lng, n, target, bit, size)
LONG *lng;
int n, *bit, size;
BYTE **target;
#endif
/* Pack 'n' WORDS, starting with 'lng[0]' into the packed array 'target'. The
elements of such a packed array do not obey BYTE-boundaries, but are put one
behind the other without any spacing. Only the 'bitsiz' number of least
significant bits are used. The starting bit of 'target' is 'bit' (bits range
from 0 to 7). After completion of 'pack_words()', both '**target' and '*bit'
are updated and define the next position in 'target' from which packing
could continue. */
{ LONG mask, window;
int valids, i, temp;
int temp_bit = *bit;
BYTE *temp_target = *target;
if (size > 0)
{ mask = setbits[size];
for (i = 0; i < n; ++i)
{ window = lng[i] & mask;
valids = size;
if (temp_bit == 0)
*temp_target = (BYTE) window;
else
{ temp = shift_left(window, temp_bit);
*temp_target |= temp;}
window = shift_right(window, 8 - temp_bit);
valids = valids - (8 - temp_bit);
if (valids < 0)
temp_bit += size;
else
{ while (valids > 0)
{ *++temp_target = (BYTE) window;
window = shift_right(window, 8);
valids -= 8;}
temp_bit = 8 + valids;}
if (valids == 0)
{ temp_bit = 0;
++temp_target;}}
*target = temp_target;
*bit = (*bit + (size * n)) % 8;}}
/******************************************************************************/
#if defined (PROTOTYPE)
void readpack_word_f(WORD *img, LONG *filename)
#else
void readpack_word_f(img, filename)
WORD *img;
LONG *filename;
#endif
/* Fortran frontend of readpack_word_c. Because the way in which fortran
passes strings is not defined, it passes the filename in which the
packed image should be stored as an array of LONGs. */
{ char c_filename[1024];
#if !defined (PROTOTYPE)
void readpack_word_c();
char *long_to_char();
#endif
readpack_word_c(img, long_to_char(filename, c_filename));}
/******************************************************************************/
#if defined (PROTOTYPE)
void readpack_long_f(LONG *img, LONG *filename)
#else
void readpack_long_f(img, filename)
LONG *img, *filename;
#endif
/* Fortran frontend of readpack_long_c. Because the way in which fortran
passes strings is not defined, it passes the filename in which the
packed image should be stored as an array of LONGs. */
{ char c_filename[1024];
#if !defined (PROTOTYPE)
void readpack_long_c();
char *long_to_char();
#endif
readpack_long_c(img, long_to_char(filename, c_filename));}
/******************************************************************************/
#if defined (PROTOTYPE)
void readpack_word_c(WORD *img, char *filename)
#else
void readpack_word_c(img, filename)
WORD *img;
char *filename;
#endif
/* Unpacks packed image from 'filename' into the WORD-array 'img'. Scans the
file defined by 'filename' until the PACKIDENTIFIER is found, then unpacks
starting from there. */
{ FILE *packfile;
int x = 0, y = 0, i = 0, c = 0, version = 0;
char header[BUFSIZ];
#if !defined (PROTOTYPE)
void unpack_word();
void v2unpack_word();
#endif
packfile = fopen(filename, "r");
if (packfile == NULL)
printf("%s does not exist.\n", filename);
else
{ header[0] = '\n';
header[1] = 0;
while ((c != EOF) && ((x == 0) || (y == 0)))
{ c = i = x = y = 0;
while ((++i < BUFSIZ) && (c != EOF) && (c != '\n') && (x==0) && (y==0))
if ((header[i] = c = getc(packfile)) == '\n')
{ if (sscanf(header, PACKIDENTIFIER, &x, &y) == 2)
version = 1;
else if (sscanf(header, V2IDENTIFIER, &x, &y) == 2)
version = 2;}}
if (version == 1)
unpack_word(packfile, x, y, img);
else if (version == 2)
v2unpack_word(packfile, x, y, img);
fclose(packfile);}}
/******************************************************************************/
#if defined (PROTOTYPE)
void readpack_long_c(LONG *img, char *filename)
#else
void readpack_long_c(img, filename)
LONG *img;
char *filename;
#endif
/* Unpacks packed image from 'filename' into the LONG-array 'img'. Scans the
file defined by 'filename' until the PACKIDENTIFIER is found, then unpacks
starting from there. */
{ FILE *packfile;
int x = 0, y = 0, i = 0, c = 0, version = 0;
char header[BUFSIZ];
#if !defined (PROTOTYPE)
void unpack_long();
void v2unpack_long();
#endif
packfile = fopen(filename, "r");
if (packfile == NULL)
printf("%s does not exist.", filename);
else
{ header[0] = '\n';
header[1] = 0;
while ((c != EOF) && ((x == 0) || (y == 0)))
{ c = i = x = y = 0;
while ((++i < BUFSIZ) && (c != EOF) && (c != '\n') && (x==0) && (y==0))
if ((header[i] = c = getc(packfile)) == '\n')
{ if (sscanf(header, PACKIDENTIFIER, &x, &y) == 2)
version = 1;
else if (sscanf(header, V2IDENTIFIER, &x, &y) == 2)
version = 2;}}
if (version == 1)
unpack_long(packfile, x, y, img);
else if (version == 2)
v2unpack_long(packfile, x, y, img);
fclose(packfile);}}
/******************************************************************************/
#if defined (PROTOTYPE)
void unpack_word(FILE *packfile, int x, int y, WORD *img)
#else
void unpack_word(packfile, x, y, img)
FILE *packfile;
int x, y;
WORD *img;
#endif
/* Unpacks a packed image into the WORD-array 'img'. The image is stored
in 'packfile'. The file should be properly positioned: the first BYTE
read is assumed to be the first BYTE of the packed image. */
{ int valids = 0, spillbits = 0, usedbits, total = x * y;
LONG window = 0L, spill = 0, pixel = 0, nextint, bitnum, pixnum;
static int bitdecode[8] = {0, 4, 5, 6, 7, 8, 16, 32};
while (pixel < total)
{ if (valids < 6)
{ if (spillbits > 0)
{ window |= shift_left(spill, valids);
valids += spillbits;
spillbits = 0;}
else
{ spill = (LONG) getc(packfile);
spillbits = 8;}}
else
{ pixnum = 1 << (window & setbits[3]);
window = shift_right(window, 3);
bitnum = bitdecode[window & setbits[3]];
window = shift_right(window, 3);
valids -= 6;
while ((pixnum > 0) && (pixel < total))
{ if (valids < bitnum)
{ if (spillbits > 0)
{ window |= shift_left(spill, valids);
if ((32 - valids) > spillbits)
{ valids += spillbits;
spillbits = 0;}
else
{ usedbits = 32 - valids;
spill = shift_right(spill, usedbits);
spillbits -= usedbits;
valids = 32;}}
else
{ spill = (LONG) getc(packfile);
spillbits = 8;}}
else
{ --pixnum;
if (bitnum == 0)
nextint = 0;
else
{ nextint = window & setbits[bitnum];
valids -= bitnum;
window = shift_right(window, bitnum);
if ((nextint & (1 << (bitnum - 1))) != 0)
nextint |= ~setbits[bitnum];}
if (pixel > x)
{ img[pixel] = (WORD) (nextint +
(img[pixel-1] + img[pixel-x+1] +
img[pixel-x] + img[pixel-x-1] + 2) / 4);
++pixel;}
else if (pixel != 0)
{ img[pixel] = (WORD) (img[pixel - 1] + nextint);
++pixel;}
else
img[pixel++] = (WORD) nextint;}}}}}
/******************************************************************************/
#if defined (PROTOTYPE)
void v2unpack_word(FILE *packfile, int x, int y, WORD *img)
#else
void v2unpack_word(packfile, x, y, img)
FILE *packfile;
int x, y;
WORD *img;
#endif
/* Unpacks a packed image into the WORD-array 'img'. The image is stored
in 'packfile'. The file should be properly positioned: the first BYTE
read is assumed to be the first BYTE of the packed image. */
{ int valids = 0, spillbits = 0, usedbits, total = x * y;
LONG window = 0L, spill = 0, pixel = 0, nextint, bitnum, pixnum;
static int bitdecode[16] = {0, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15,
16, 32};
while (pixel < total)
{ if (valids < 7)
{ if (spillbits > 0)
{ window |= shift_left(spill, valids);
valids += spillbits;
spillbits = 0;}
else
{ spill = (LONG) getc(packfile);
spillbits = 8;}}
else
{ pixnum = 1 << (window & setbits[3]);
window = shift_right(window, 3);
bitnum = bitdecode[window & setbits[4]];
window = shift_right(window, 4);
valids -= 7;
while ((pixnum > 0) && (pixel < total))
{ if (valids < bitnum)
{ if (spillbits > 0)
{ window |= shift_left(spill, valids);
if ((32 - valids) > spillbits)
{ valids += spillbits;
spillbits = 0;}
else
{ usedbits = 32 - valids;
spill = shift_right(spill, usedbits);
spillbits -= usedbits;
valids = 32;}}
else
{ spill = (LONG) getc(packfile);
spillbits = 8;}}
else
{ --pixnum;
if (bitnum == 0)
nextint = 0;
else
{ nextint = window & setbits[bitnum];
valids -= bitnum;
window = shift_right(window, bitnum);
if ((nextint & (1 << (bitnum - 1))) != 0)
nextint |= ~setbits[bitnum];}
if (pixel > x)
{ img[pixel] = (WORD) (nextint +
(img[pixel-1] + img[pixel-x+1] +
img[pixel-x] + img[pixel-x-1] + 2) / 4);
++pixel;}
else if (pixel != 0)
{ img[pixel] = (WORD) (img[pixel - 1] + nextint);
++pixel;}
else
img[pixel++] = (WORD) nextint;}}}}}
/******************************************************************************/
#if defined (PROTOTYPE)
void unpack_long(FILE *packfile, int x, int y, LONG *img)
#else
void unpack_long(packfile, x, y, img)
FILE *packfile;
int x, y;
LONG *img;
#endif
/* Unpacks a packed image into the LONG-array 'img'. The image is stored
in 'packfile'. The file should be properly positioned: the first BYTE
read is assumed to be the first BYTE of the packed image. */
{ int valids = 0, spillbits = 0, usedbits, total = x * y;
LONG window = 0L, spill = 0, pixel = 0, nextint, bitnum, pixnum;
static int bitdecode[8] = {0, 4, 5, 6, 7, 8, 16, 32};
while (pixel < total)
{ if (valids < 6)
{ if (spillbits > 0)
{ window |= shift_left(spill, valids);
valids += spillbits;
spillbits = 0;}
else
{ spill = (LONG) getc(packfile);
spillbits = 8;}}
else
{ pixnum = 1 << (window & setbits[3]);
window = shift_right(window, 3);
bitnum = bitdecode[window & setbits[3]];
window = shift_right(window, 3);
valids -= 6;
while ((pixnum > 0) && (pixel < total))
{ if (valids < bitnum)
{ if (spillbits > 0)
{ window |= shift_left(spill, valids);
if ((32 - valids) > spillbits)
{ valids += spillbits;
spillbits = 0;}
else
{ usedbits = 32 - valids;
spill = shift_right(spill, usedbits);
spillbits -= usedbits;
valids = 32;}}
else
{ spill = (LONG) getc(packfile);
spillbits = 8;}}
else
{ --pixnum;
if (bitnum == 0)
nextint = 0;
else
{ nextint = window & setbits[bitnum];
valids -= bitnum;
window = shift_right(window, bitnum);
if ((nextint & (1 << (bitnum - 1))) != 0)
nextint |= ~setbits[bitnum];}
if (pixel > x)
{ img[pixel] = (LONG) (nextint +
(img[pixel-1] + img[pixel-x+1] +
img[pixel-x] + img[pixel-x-1] + 2) / 4);
++pixel;}
else if (pixel != 0)
{ img[pixel] = (LONG) (img[pixel - 1] + nextint);
++pixel;}
else
img[pixel++] = (LONG) nextint;}}}}}
/******************************************************************************/
#if defined (PROTOTYPE)
void v2unpack_long(FILE *packfile, int x, int y, LONG *img)
#else
void v2unpack_long(packfile, x, y, img)
FILE *packfile;
int x, y;
LONG *img;
#endif
/* Unpacks a packed image into the LONG-array 'img'. The image is stored
in 'packfile'. The file should be properly positioned: the first BYTE
read is assumed to be the first BYTE of the packed image. */
{ int valids = 0, spillbits = 0, usedbits, total = x * y;
LONG window = 0L, spill = 0, pixel = 0, nextint, bitnum, pixnum;
static int bitdecode[16] = {0, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15,
16, 32};
while (pixel < total)
{ if (valids < 7)
{ if (spillbits > 0)
{ window |= shift_left(spill, valids);
valids += spillbits;
spillbits = 0;}
else
{ spill = (LONG) getc(packfile);
spillbits = 8;}}
else
{ pixnum = 1 << (window & setbits[3]);
window = shift_right(window, 3);
bitnum = bitdecode[window & setbits[4]];
window = shift_right(window, 4);
valids -= 7;
while ((pixnum > 0) && (pixel < total))
{ if (valids < bitnum)
{ if (spillbits > 0)
{ window |= shift_left(spill, valids);
if ((32 - valids) > spillbits)
{ valids += spillbits;
spillbits = 0;}
else
{ usedbits = 32 - valids;
spill = shift_right(spill, usedbits);
spillbits -= usedbits;
valids = 32;}}
else
{ spill = (LONG) getc(packfile);
spillbits = 8;}}
else
{ --pixnum;
if (bitnum == 0)
nextint = 0;
else
{ nextint = window & setbits[bitnum];
valids -= bitnum;
window = shift_right(window, bitnum);
if ((nextint & (1 << (bitnum - 1))) != 0)
nextint |= ~setbits[bitnum];}
if (pixel > x)
{ img[pixel] = (LONG) (nextint +
(img[pixel-1] + img[pixel-x+1] +
img[pixel-x] + img[pixel-x-1] + 2) / 4);
++pixel;}
else if (pixel != 0)
{ img[pixel] = (LONG) (img[pixel - 1] + nextint);
++pixel;}
else
img[pixel++] = (LONG) nextint;}}}}}
/******************************************************************************/
#if defined (PROTOTYPES)
char *long_to_char(LONG *lng, char *string)
#else
char *long_to_char(lng, string)
LONG *lng;
char *string;
#endif
/* Shrinks an array of LONGs into an array of chars, used in order to translate
an encoded string array passed by fortran into a c-type string. Returns
'string'. */
{ char *s = string;
do
*(s++) = (char) *lng;
while (*(lng++) != 0);
return(string);}
/******************************************************************************/
#if defined (PROTOTYPE)
void imsiz_c(char *filename, LONG *x, LONG *y)
#else
void imsiz_c(filename, x, y)
char *filename;
LONG *x, *y;
#endif
/* Determines the size of the the packed image "filename" after unpacking. The
dimensions are returned in x and y. */
{ FILE *packfile;
int i = 0, c = 0;
char header[BUFSIZ];
packfile = fopen(filename, "r");
header[0] = '\n';
header[1] = 0;
*x = *y = 0;
if (packfile != NULL)
{ while ((c != EOF) && ((*x == 0) || (*y == 0)))
{ c = i = *x = *y = 0;
while ((++i < BUFSIZ) && (c != EOF) && (c != '\n') && (*x==0) && (*y==0))
{ if ((header[i] = c = getc(packfile)) == '\n')
{ if (sscanf(header, PACKIDENTIFIER, x, y) == 2) {
/* version = 1; */
}
else if (sscanf(header, V2IDENTIFIER, x, y) == 2) {
/* version = 2; */
}
}
}
}
}
fclose(packfile);
}
/******************************************************************************/
#if defined (PROTOTYPE)
void imsiz_f(LONG *filename, LONG *x, LONG *y)
#else
void imsiz_f(filename, x, y)
LONG *filename, *x, *y;
#endif
/* Fortran frontend of imsiz_c. Because the way in which fortran
passes strings is not defined, it passes the filename in which the
packed image should be stored as an array of LONGs. */
{ char c_filename[1024];
#if !defined (PROTOTYPE)
void imsiz_c();
char *long_to_char();
#endif
imsiz_c(long_to_char(filename, c_filename), x, y);}
/******************************************************************************/
#if defined (PROTOTYPE)
void mirror_wordimg(WORD *img, LONG *x, LONG *y)
#else
void mirror_wordimg(img, x, y)
WORD *img;
LONG *x, *y;
#endif
/* Replaces img with its mirror by interchanging rows. 'x' is the fast index,
'y' is the slow index. */
{ WORD *buff;
int i, j;
buff = (WORD *)malloc(sizeof(WORD) * *x);
for (i = 0, j = *y - 1; i < j; ++i, --j)
{ memcpy(buff, img + (i * *x), sizeof(WORD) * *x);
memcpy(img + (i * *x), img + (j * *x), sizeof(WORD) * *x);
memcpy(img + (j * *x), buff, sizeof(WORD) * *x);}
free((void *) buff);}
/******************************************************************************/
#if defined (PROTOTYPE)
void mirror_longimg(LONG *img, LONG *x, LONG *y)
#else
void mirror_longimg(img, x, y)
LONG *img, *x, *y;
#endif
/* Replaces img with its mirror by interchanging rows. 'x' is the fast index,
'y' is the slow index. */
{ LONG *buff;
int i, j;
buff = (LONG *)malloc(sizeof(LONG) * *x);
for (i = 0, j = *y - 1; i < j; ++i, --j)
{ memcpy(buff, img + (i * *x), sizeof(LONG) * *x);
memcpy(img + (i * *x), img + (j * *x), sizeof(LONG) * *x);
memcpy(img + (j * *x), buff, sizeof(LONG) * *x);}
free((void *) buff);}
/******************************************************************************/
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