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C
C pxxml.f: write XML tags into program outout
C Copyright (C) 2001 Alun Ashton
C
C This library is free software: you can redistribute it and/or
C modify it under the terms of the GNU Lesser General Public License
C version 3, modified in accordance with the provisions of the
C license to address the requirements of UK law.
C
C You should have received a copy of the modified GNU Lesser General
C Public License along with this library. If not, copies may be
C downloaded from http://www.ccp4.ac.uk/ccp4license.php
C
C This program is distributed in the hope that it will be useful,
C but WITHOUT ANY WARRANTY; without even the implied warranty of
C MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
C GNU Lesser General Public License for more details.
C
C
C
C =========
C pxxml.f
C =========
C
C Author : a.w.ashton@ccp4.ac.uk
C Version : 1.0
C future : translate to C or C++
C
C Assumption 1 : Exsisting/New file
C XML files are only to be writen from new. The design must take into consideration
C the possability of future extension so that XML file might be reopned.
C
C Assumption 2 : Sizes
C The maximum size for an Element value or name is 80 characters.
C The maximum size for an Attribute value or name is 80 characters.
C The maximum size for program name is 20 characters.
C The maximum size for XML filename including path is 70 characters.
C The maximum number of elements is 80.
C
C Assumption 3: Language
C In the first instance the libs will be writen in fortran to test the other
C assumptions!
C SUBROUTINE XMLOpen (XMLFileUnit, rootvalue, ifail)
C
C First subroutine to be called.
C Arguments: XMLFIleUnit : Input - No value
C Output returns the file Unit number
C root value = eg html
C Ifail : same as usual!
C
C Purpose: open an XML file.
C
C See if XMLFILE has been assigned e.g. on command line.
C If XMLFILE not assigned use program name.xml.
C If file exists overwrite it.
C Write out the header.
C No provision for existing XML files to be reopened
subroutine XMLOpen (XMLFileUnit, rootvalue, ifail)
logical ccpexs
character*(*) rootvalue
integer XMLFileUnit, ifail, elementstatus(80), elementnumber
character*80 openelements(80), XMLFileName
character*1024 XMLOutputLine
character version*10, date*8, progname*32
common /ccp4xmld/ elementnumber, elementstatus, openelements,
$ XMLFileName,XMLOutputLine
integer lenstr
external ccpexs,lenstr
XMLFileName=' '
elementnumber=0
elementstatus(1)=0
call ccp4_version(version)
call ccpdat(date)
call ccppnm(progname)
call ugtenv('XMLFILE',XMLFileName)
if (XMLFileUnit.ne.6) then
if (XMLFileName.eq.' ')
+ XMLFileName=progname(1:lenstr(progname))//'.xml'
if (ccpexs(XMLFileName)) call ccperr(2,'XMLFILE OVERWRITTEN')
call ccpdpn(XMLFileUnit,XMLFileName,'UNKNOWN','F',0,ifail)
endif
C check to see if the rootvalue has a value or default to html
if (lenstr(rootvalue).le.1) rootvalue='html'
if (rootvalue(1:lenstr(rootvalue)).ne.'html')
$ write (XMLFileUnit,'(A)') '<?xml version="1.0"?>'
call XMLOpenElement(XMLFileUnit, rootvalue(1:lenstr(rootvalue)),
$ ifail)
if (rootvalue(1:lenstr(rootvalue)).ne.'html') then
C First element should be information about the program
call XMLOpenElement(XMLFileUnit,
$ progname(1:lenstr(progname)), ifail)
call XMLWriteAttribute(XMLFileUnit,
$ progname(1:lenstr(progname)),
$ 'ccp4_version', version(1:lenstr(version)), ifail)
call XMLWriteAttribute(XMLFileUnit,
$ progname(1:lenstr(progname)),
$ 'date', date(1:lenstr(date)), ifail)
call XMLCloseElement(XMLFileUnit, progname(1:lenstr(progname)),
$ ifail)
endif
return
end
C subroutine XMLWriteJournalCitation(XMLFileUnit, AuthorsString,
C + JournalString, VolumeString, PageStart, PageEnd, YearString,
C + ifail)
C For example:
C call XMLWriteJournalCitation(XMLFILEUNIT,'B.W.Matthews',
C + 'J.Mol.Biol.','33','491','497','1968',ifail)
C If using the Bioxhit schema, this should only be called once
C for each processing_stage.
subroutine XMLWriteJournalCitation(XMLFileUnit, AuthorsString,
+ JournalString, VolumeString, IssueString, PageStart, PageEnd,
+ YearString, ifail)
integer XMLFileUnit, ifail
character*(*) AuthorsString, JournalString, VolumeString,
+ IssueString, PageStart, PageEnd, YearString
call XMLOpenElement(XMLFileUnit,'citation',ifail)
call XMLWriteElement(XMLFileUnit,
+ 'citation_type', 'journal', ifail)
if (AuthorsString.ne.' ') call XMLWriteElement(XMLFileUnit,
+ 'citation_id', AuthorsString, ifail)
if (JournalString.ne.' ') call XMLWriteElement(XMLFileUnit,
+ 'journal_abbreviation', JournalString, ifail)
if (VolumeString.ne.' ') call XMLWriteElement(XMLFileUnit,
+ 'journal_volume', VolumeString, ifail)
if (IssueString.ne.' ') call XMLWriteElement(XMLFileUnit,
+ 'journal_issue', IssueString, ifail)
if (PageStart.ne.' ') call XMLWriteElement(XMLFileUnit,
+ 'page_from', PageStart, ifail)
if (PageEnd.ne.' ') call XMLWriteElement(XMLFileUnit,
+ 'page_to', PageEnd, ifail)
if (YearString.ne.' ') call XMLWriteElement(XMLFileUnit,
+ 'publication_year', YearString, ifail)
call XMLCloseElement(XMLFileUnit,'citation',ifail)
return
end
C subroutine XMLWriteMessages(XMLFileUnit, ccperr_level,
C + MessageString, ifail)
C For example:
C call XMLWriteMessage(XMLFileUnit,0,'Normal Termination',ifail)
C If using the Bioxhit schema, this should only be called once
C for each processing_stage.
subroutine XMLWriteMessages(XMLFileUnit, ccperr_level,
+ MessageString, ifail)
integer XMLFileUnit, ifail, ccperr_level
character*(*) MessageString
character MessageCode*4,MessageSeverity*12
write(MessageCode,'(I4)') ccperr_level
if (ccperr_level.eq.0) MessageSeverity='information'
if (ccperr_level.eq.1) MessageSeverity='fatal error'
if (ccperr_level.eq.2) MessageSeverity='warning'
if (ccperr_level.eq.3) MessageSeverity='information'
if (ccperr_level.eq.4) MessageSeverity='information'
call XMLOpenElement(XMLFileUnit,'messages',ifail)
call XMLWriteElement(XMLFileUnit,
+ 'message_code', MessageCode, ifail)
if (MessageString.ne.' ') call XMLWriteElement(XMLFileUnit,
+ 'message_text', MessageString, ifail)
call XMLWriteElement(XMLFileUnit,
+ 'message_severity', MessageSeverity, ifail)
call XMLCloseElement(XMLFileUnit,'messages',ifail)
return
end
C subroutine XMLOpenElement(XMLFileUnit, ElementName, ifail)
C XMLFileUnit - integer - if file not already opened it will be
C element name = value is char string.
C completes a tag and reates a sub element but leaves tag open
C e.g. <oldtag
C >
C <leftopen
subroutine XMLOpenElement(XMLFileUnit, ElementName, ifail)
logical ccpexs
character*(*) ElementName
character*32 progname
character*80 indentline
integer indent
integer XMLFileUnit, ifail, elementstatus(80), elementnumber
character*80 openelements(80), XMLFileName
character*1024 XMLOutputLine
common /ccp4xmld/ elementnumber, elementstatus, openelements,
$ XMLFileName,XMLOutputLine
c save /ccp4xml/
integer lenstr
external ccpexs,lenstr
indentline=' '
if (.not.ccpexs(XMLFileName) .and. .not.(XMLFileUnit.eq.6)) then
call ccppnm(progname)
call ccplwc(progname)
call XMLOpen (XMLFileUnit,progname(1:lenstr(progname)), ifail)
endif
elementnumber=elementnumber+1
openelements(elementnumber)=ElementName(1:lenstr(ElementName))
if (elementnumber.eq.1) then
if (elementstatus(1).ne.2) then
write (XMLFileUnit, 95) ElementName(1:lenstr(ElementName))
elementstatus(elementnumber) = 2
endif
return
endif
c close previous element if needed
if (elementnumber.gt.1) then
if (elementstatus(elementnumber-1).eq.1) then
c add the closing bracket and print
write (XMLOutputLine(lenstr(XMLOutputLine)+1:),100)
write (XMLFileUnit,'(a)')
$ XMLOutputLine(1:lenstr(XMLOutputLine))
XMLOutputLine = ' '
c change status to complete and open
elementstatus(elementnumber-1)=2
endif
endif
c
c open current element
c firstly indent line
do 10 indent = 1, elementnumber
write (indentline(indent:indent), 110)
10 continue
c write indent and tag
write (XMLOutputLine,130) indentline(1:elementnumber),
$ ElementName(1:lenstr(ElementName))
elementstatus(elementnumber)=1
c unindented tag
95 format(' <',a,'>')
c tag end and start...
100 format('>')
105 format('<')
c this is the indent
110 format(' ')
c simply a string...
120 format(a)
c indented open tag
130 format(a,'<',a)
return
end
C subroutine XMLWriteAttribute
C ElementName - if element not already opened then it will be
C these are strings: AttributeName, AttributeValue,
C
subroutine XMLWriteAttribute(XMLFileUnit, ElementName,
$ AttributeName, AttributeValue, ifail)
integer lenstr
character*(*) ElementName, AttributeName, AttributeValue
integer indent
integer XMLFileUnit, ifail, elementstatus(80), elementnumber
character*80 openelements(80), XMLFileName
character*1024 XMLOutputLine
common /ccp4xmld/ elementnumber, elementstatus, openelements,
$ XMLFileName,XMLOutputLine
c save /ccp4xml/
external lenstr
c firstly check element is open otherwise open!
if (elementstatus(elementnumber).ne.1) then
call XMLOpenElement(XMLFileUnit, ElementName, ifail)
endif
c secondly write the attribute
write (XMLOutputLine(lenstr(XMLOutputLine)+1:), 120)
$ AttributeName(1:lenstr(AttributeName)),
$ AttributeValue(1:lenstr(AttributeValue))
c this is the indent
110 format(' ')
c simply a string...
120 format(' ',a,'="',a,'" ')
return
end
C subroutine XMLWriteElement
C for inputing the value of the element. if its not already opened
C it will be. Closes the element as well
C
subroutine XMLWriteElement(XMLFileUnit, ElementName,
$ ElementValue, ifail)
character*(*) ElementName, ElementValue
integer XMLFileUnit, ifail, elementstatus(80), elementnumber
character*80 openelements(80), XMLFileName
character*1024 XMLOutputLine
common /ccp4xmld/ elementnumber, elementstatus, openelements,
$ XMLFileName,XMLOutputLine
c save /ccp4xml/
integer lenstr
external lenstr
if (ElementName(1:lenstr(ElementName)).ne.
$ openelements(elementnumber)) then
call XMLOpenElement(XMLFileUnit, ElementName, ifail)
endif
if (elementnumber.ne.1) then
c complete element and give the value
write (XMLOutputLine(lenstr(XMLOutputLine)+1:), 125)
$ ElementValue(1:lenstr(ElementValue))
elementstatus(elementnumber)=2
endif
call XMLCloseElement(XMLFileUnit, ElementName, ifail)
c an indented string
125 format('>',a)
return
end
c subroutine XMLCloseElement
C the subroutine will close the element if it is the current element
C or go up the tree closing all elements till it reaches teh one specified.
C if its the root element being specified then it will close the file as well.
C
subroutine XMLCloseElement(XMLFileUnit, ElementName, ifail)
character*(*) ElementName
character*80 indentline
integer indent, elementlength
integer XMLFileUnit, ifail, elementstatus(80), elementnumber
character*80 openelements(80), XMLFileName
integer lenstr
external lenstr
character*1024 XMLOutputLine
common /ccp4xmld/ elementnumber, elementstatus, openelements,
$ XMLFileName,XMLOutputLine
c save /ccp4xml/
c sanity check to see if element is open
do i = elementnumber,1,-1
if (ElementName(1:lenstr(ElementName)).eq.
$ openelements(i)) goto 1
enddo
call ccperr(2,'XMLCloseElement: trying to close wrong element')
return
1 continue
elementlength=lenstr(openelements(elementnumber))
indentline=' '
indent=0
do 10 indent = 1, elementnumber
write (indentline(indent:indent), 110)
10 continue
if (ElementName(1:lenstr(ElementName)).ne.
$ openelements(elementnumber)) then
C if the element to close is not the open one then close
C the open one - can assume its just e.g. <wibble and not
C <wibble> so only need a />
write (XMLOutputLine(lenstr(XMLOutputLine)+1:), 155)
write (XMLFileUnit,'(a)')
$ XMLOutputLine(1:lenstr(XMLOutputLine))
XMLOutputLine = ' '
openelements(elementnumber)=' '
elementstatus(elementnumber)=0
elementnumber=elementnumber-1
goto 1
else
if (elementstatus(elementnumber).eq.1) then
write (XMLOutputLine(lenstr(XMLOutputLine)+1:), 155)
elementstatus(elementnumber)=2
write (XMLFileUnit,'(a)')
$ XMLOutputLine(1:lenstr(XMLOutputLine))
XMLOutputLine = ' '
else
if (lenstr(XMLOutputLine).eq.0) then
write (XMLOutputLine,145) indentline(1:elementnumber),
$ openelements(elementnumber)(1:elementlength)
else
write (XMLOutputLine(lenstr(XMLOutputLine)+1:), 150)
$ openelements(elementnumber)(1:elementlength)
endif
write (XMLFileUnit,'(a)')
$ XMLOutputLine(1:lenstr(XMLOutputLine))
XMLOutputLine = ' '
endif
openelements(elementnumber)=' '
elementstatus(elementnumber)=0
elementnumber=elementnumber-1
endif
if (elementnumber.eq.0) then
close (XMLFileUnit)
endif
c this is the indent
110 format(' ')
c indented complete end tag
145 format(a,'</',a,'>')
c indented complete end tag
150 format('</',a,'>')
c indented complete end tag
155 format(' />')
return
end
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