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-- $Id: map.sql,v 1.14 2007-03-23 15:18:02 scottcain Exp $
-- ==========================================
-- Chado map module
--
-- =================================================================
-- Dependencies:
--
-- :import feature from sequence
-- :import cvterm from cv
-- :import pub from pub
-- =================================================================
-- ================================================
-- TABLE: featuremap
-- ================================================
create table featuremap (
featuremap_id serial not null,
primary key (featuremap_id),
name varchar(255),
description text,
unittype_id int null,
foreign key (unittype_id) references cvterm (cvterm_id) on delete set null INITIALLY DEFERRED,
constraint featuremap_c1 unique (name)
);
-- ================================================
-- TABLE: featurerange
-- ================================================
create table featurerange (
featurerange_id serial not null,
primary key (featurerange_id),
featuremap_id int not null,
foreign key (featuremap_id) references featuremap (featuremap_id) on delete cascade INITIALLY DEFERRED,
feature_id int not null,
foreign key (feature_id) references feature (feature_id) on delete cascade INITIALLY DEFERRED,
leftstartf_id int not null,
foreign key (leftstartf_id) references feature (feature_id) on delete cascade INITIALLY DEFERRED,
leftendf_id int,
foreign key (leftendf_id) references feature (feature_id) on delete set null INITIALLY DEFERRED,
rightstartf_id int,
foreign key (rightstartf_id) references feature (feature_id) on delete set null INITIALLY DEFERRED,
rightendf_id int not null,
foreign key (rightendf_id) references feature (feature_id) on delete cascade INITIALLY DEFERRED,
rangestr varchar(255)
);
create index featurerange_idx1 on featurerange (featuremap_id);
create index featurerange_idx2 on featurerange (feature_id);
create index featurerange_idx3 on featurerange (leftstartf_id);
create index featurerange_idx4 on featurerange (leftendf_id);
create index featurerange_idx5 on featurerange (rightstartf_id);
create index featurerange_idx6 on featurerange (rightendf_id);
COMMENT ON TABLE featurerange IS 'In cases where the start and end of a mapped feature is a range, leftendf and rightstartf are populated. leftstartf_id, leftendf_id, rightstartf_id, rightendf_id are the ids of features with respect to which the feature is being mapped. These may be cytological bands.';
COMMENT ON COLUMN featurerange.featuremap_id IS 'featuremap_id is the id of the feature being mapped.';
-- ================================================
-- TABLE: featurepos
-- ================================================
create table featurepos (
featurepos_id serial not null,
primary key (featurepos_id),
featuremap_id serial not null,
foreign key (featuremap_id) references featuremap (featuremap_id) on delete cascade INITIALLY DEFERRED,
feature_id int not null,
foreign key (feature_id) references feature (feature_id) on delete cascade INITIALLY DEFERRED,
map_feature_id int not null,
foreign key (map_feature_id) references feature (feature_id) on delete cascade INITIALLY DEFERRED,
mappos float not null
);
create index featurepos_idx1 on featurepos (featuremap_id);
create index featurepos_idx2 on featurepos (feature_id);
create index featurepos_idx3 on featurepos (map_feature_id);
COMMENT ON COLUMN featurepos.map_feature_id IS 'map_feature_id
links to the feature (map) upon which the feature is being localized.';
-- ================================================
-- TABLE: featuremap_pub
-- ================================================
create table featuremap_pub (
featuremap_pub_id serial not null,
primary key (featuremap_pub_id),
featuremap_id int not null,
foreign key (featuremap_id) references featuremap (featuremap_id) on delete cascade INITIALLY DEFERRED,
pub_id int not null,
foreign key (pub_id) references pub (pub_id) on delete cascade INITIALLY DEFERRED
);
create index featuremap_pub_idx1 on featuremap_pub (featuremap_id);
create index featuremap_pub_idx2 on featuremap_pub (pub_id);
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