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#!/bin/bash
set -E
trap onexit ERR
function onexit() {
EXITCODE=$?
if [ $EXITCODE -eq 102 ]; then
echo "Database access not correctly configured"
echo "Check your configuration and run manually the database update:"
echo "cd /usr/share/gmod/chado/"
echo "export GMOD_ROOT=/usr/share/gmod/chado"
echo "export PGPASSFILE=/usr/share/gmod/chado/pgpass"
echo "For a new installation:"
echo "make load_schema"
echo "make prepdb"
echo "OR"
echo "make update to upgrade the schema from a previous install"
exit 0
fi
if [ $EXITCODE -eq 100 ]; then
make load_schema
make prepdb
make clean &> /dev/null
rm -f /usr/share/gmod/chado/pgpass
exit 0
fi
if [ $EXITCODE -eq 101 ]; then
make update
make clean &> /dev/null
rm -f /usr/share/gmod/chado/pgpass
exit 0
fi
exit $EXITCODE
}
case "$1" in
configure)
mkdir -p /usr/share/gmod/chado/lib/Bio/Chado/
if [ -e /etc/gmod/gmod-chado.conf ]; then
export GMOD_ROOT=/usr/share/gmod/chado
. /etc/gmod/gmod-chado.conf
cd /usr/share/gmod/chado
export CHADO_DB_NAME=gmod-chado
CHADOTMP=`mktemp -d`
perl Makefile.PL update GMOD_ROOT=/usr/share/gmod/chado DBNAME=$CHADO_DB_NAME DBUSER=$DBUSER DBPASS=$DBPASS DBHOST=$DBHOST DBPORT=$DBPORT DBDRIVER=PostgreSQL SIMPLE=Y RECONFIGURE=1 LOCAL_TMP=$CHADOTMP &> /dev/null
rm -rf $CHADOTMP
export PATH=$PATH:/usr/share/gmod/chado/bin
touch /usr/share/gmod/chado/pgpass
chmod 0600 /usr/share/gmod/chado/pgpass
echo "*:*:*:$DBUSER:$DBPASS" > /usr/share/gmod/chado/pgpass
export PGPASSFILE=/usr/share/gmod/chado/pgpass
# Need to detect with testdb if access to db is ok or need to be configured
perl /usr/share/gmod/chado/bin/testdb.pl
else
echo "Application is not yet configured."
echo "To install or upgrade the database:"
echo " - create a user in the database"
echo " - configure the application"
echo " - perl /usr/share/gmod/chado/Makefile.PL update"
fi
;;
abort-upgrade|abort-remove|abort-deconfigure)
;;
*)
echo "postinst called with unknown argument \`$1'" >&2
exit 1
;;
esac
#DEBHELPER#
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