File: make_cvtermpath.sh

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#!/bin/sh
#argh--path dependancy need to be fixed

echo "Relationship Ontology"
./bin/make_cvtermpath.pl $USER $DBNAME 'Relationship Ontology'         | psql -q $DBNAME

echo "Sequence Ontology Feature Annotation"
./bin/make_cvtermpath.pl $USER $DBNAME 'Sequence Ontology Feature Annotation'| psql -q $DBNAME


echo "Sequence Ontology"
./bin/make_cvtermpath.pl $USER $DBNAME 'Sequence Ontology'             | psql -q $DBNAME

echo "Gene Ontology"
./bin/make_cvtermpath.pl $USER $DBNAME 'Cellular Component (Gene Ontology)'                 | psql -q $DBNAME

./bin/make_cvtermpath.pl $USER $DBNAME 'Molecular Function (Gene Ontology)'                 | psql -q $DBNAME

./bin/make_cvtermpath.pl $USER $DBNAME 'Biological Process (Gene Ontology)'                 | psql -q $DBNAME

echo "Mouse Embryo Anatomy Ontology"
./bin/make_cvtermpath.pl $USER $DBNAME 'Mouse Embryo Anatomy Ontology' | psql -q $DBNAME

echo "Mouse Adult Anatomy Ontology"
./bin/make_cvtermpath.pl $USER $DBNAME 'Mouse Adult Anatomy Ontology'  | psql -q $DBNAME

echo "Cell Ontology"
./bin/make_cvtermpath.pl $USER $DBNAME 'Cell Ontology'                 | psql -q $DBNAME

echo "eVOC Pathology Ontology"
./bin/make_cvtermpath.pl $USER $DBNAME 'eVOC Pathology Ontology'       | psql -q $DBNAME

echo "Mouse Pathology Ontology (Pathbase)"
./bin/make_cvtermpath.pl $USER $DBNAME 'Mouse Pathology Ontology (Pathbase)' | psql -q $DBNAME

true;




#echo "eVOC Cell Type Ontology"
#./bin/make_cvtermpath.pl $USER $DBNAME 'eVOC Cell Type Ontology'       | psql -q $DBNAME