File: REA.cif

package info (click to toggle)
libcifpp 9.0.5-2
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 15,528 kB
  • sloc: cpp: 33,979; sh: 105; makefile: 12
file content (188 lines) | stat: -rw-r--r-- 9,864 bytes parent folder | download | duplicates (5)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
data_REA
# 
_chem_comp.id                                    REA 
_chem_comp.name                                  "RETINOIC ACID" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H28 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2016-10-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         3KV 
_chem_comp.formula_weight                        300.435 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     REA 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1CBS 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
REA C1   C1   C 0 1 N N N 21.972 29.831 16.739 -4.684 0.932  -0.497 C1   REA 1  
REA C2   C2   C 0 1 N N N 20.921 30.524 15.841 -5.837 0.190  -1.176 C2   REA 2  
REA C3   C3   C 0 1 N N N 20.245 29.635 14.848 -6.441 -0.798 -0.171 C3   REA 3  
REA C4   C4   C 0 1 N N N 19.555 28.479 15.488 -5.418 -1.903 0.100  C4   REA 4  
REA C5   C5   C 0 1 N N N 20.389 27.812 16.587 -4.082 -1.301 0.429  C5   REA 5  
REA C6   C6   C 0 1 N N N 21.425 28.446 17.218 -3.756 -0.048 0.161  C6   REA 6  
REA C7   C7   C 0 1 N N N 22.242 27.851 18.297 -2.457 0.396  0.516  C7   REA 7  
REA C8   C8   C 0 1 N N N 21.868 26.977 19.240 -1.363 -0.229 0.007  C8   REA 8  
REA C9   C9   C 0 1 N N N 22.705 26.434 20.286 -0.076 0.257  0.298  C9   REA 9  
REA C10  C10  C 0 1 N N N 22.159 25.536 21.131 1.022  -0.370 -0.213 C10  REA 10 
REA C11  C11  C 0 1 N N N 22.875 24.924 22.234 2.306  0.115  0.077  C11  REA 11 
REA C12  C12  C 0 1 N N N 22.237 24.026 22.990 3.405  -0.513 -0.435 C12  REA 12 
REA C13  C13  C 0 1 N N N 22.856 23.377 24.125 4.689  -0.028 -0.144 C13  REA 13 
REA C14  C14  C 0 1 N N N 22.135 22.473 24.834 5.787  -0.655 -0.656 C14  REA 14 
REA C15  C15  C 0 1 N N N 22.563 21.710 26.016 7.077  -0.265 -0.244 C15  REA 15 
REA C16  C16  C 0 1 N N N 22.238 30.737 17.948 -5.246 1.886  0.559  C16  REA 16 
REA C17  C17  C 0 1 N N N 23.292 29.620 15.948 -3.911 1.737  -1.544 C17  REA 17 
REA C18  C18  C 0 1 N N N 19.791 26.449 16.947 -3.056 -2.175 1.103  C18  REA 18 
REA C19  C19  C 0 1 N N N 24.181 26.841 20.385 0.090  1.471  1.175  C19  REA 19 
REA C20  C20  C 0 1 N N N 24.303 23.747 24.489 4.855  1.186  0.733  C20  REA 20 
REA O1   O1   O 0 1 N N N 23.640 21.075 25.978 7.210  0.553  0.648  O1   REA 21 
REA O2   O2   O 0 1 N N N 21.840 21.712 27.037 8.166  -0.798 -0.840 O2   REA 22 
REA H21  H21  H 0 1 N N N 20.147 30.955 16.494 -6.598 0.905  -1.490 H21  REA 23 
REA H22  H22  H 0 1 N N N 21.425 31.330 15.288 -5.462 -0.353 -2.044 H22  REA 24 
REA H31  H31  H 0 1 N N N 19.501 30.227 14.295 -6.673 -0.278 0.759  H31  REA 25 
REA H32  H32  H 0 1 N N N 21.001 29.250 14.148 -7.349 -1.234 -0.586 H32  REA 26 
REA H41  H41  H 0 1 N N N 18.613 28.835 15.931 -5.756 -2.511 0.938  H41  REA 27 
REA H42  H42  H 0 1 N N N 19.335 27.730 14.713 -5.322 -2.531 -0.786 H42  REA 28 
REA H7   H7   H 0 1 N N N 23.276 28.162 18.329 -2.337 1.230  1.191  H7   REA 29 
REA H8   H8   H 0 1 N N N 20.840 26.645 19.217 -1.482 -1.100 -0.622 H8   REA 30 
REA H10  H10  H 0 1 N N N 21.127 25.256 20.977 0.903  -1.241 -0.842 H10  REA 31 
REA H11  H11  H 0 1 N N N 23.902 25.189 22.440 2.425  0.985  0.706  H11  REA 32 
REA H12  H12  H 0 1 N N N 21.216 23.774 22.743 3.286  -1.383 -1.063 H12  REA 33 
REA H14  H14  H 0 1 N N N 21.127 22.292 24.490 5.667  -1.451 -1.376 H14  REA 34 
REA H161 H161 H 0 0 N N N 22.984 30.265 18.604 -5.802 1.316  1.303  H161 REA 35 
REA H162 H162 H 0 0 N N N 22.618 31.709 17.601 -4.426 2.415  1.044  H162 REA 36 
REA H163 H163 H 0 0 N N N 21.302 30.887 18.506 -5.911 2.605  0.081  H163 REA 37 
REA H171 H171 H 0 0 N N N 24.033 29.127 16.595 -4.598 2.394  -2.077 H171 REA 38 
REA H172 H172 H 0 0 N N N 23.095 28.989 15.069 -3.146 2.335  -1.050 H172 REA 39 
REA H173 H173 H 0 0 N N N 23.683 30.595 15.620 -3.439 1.054  -2.251 H173 REA 40 
REA H181 H181 H 0 0 N N N 20.397 25.979 17.736 -3.448 -3.187 1.201  H181 REA 41 
REA H182 H182 H 0 0 N N N 18.761 26.584 17.308 -2.145 -2.194 0.503  H182 REA 42 
REA H183 H183 H 0 0 N N N 19.786 25.804 16.056 -2.831 -1.775 2.092  H183 REA 43 
REA H191 H191 H 0 0 N N N 24.647 26.327 21.238 0.171  1.159  2.216  H191 REA 44 
REA H192 H192 H 0 0 N N N 24.702 26.559 19.458 0.993  2.008  0.885  H192 REA 45 
REA H193 H193 H 0 0 N N N 24.252 27.929 20.529 -0.774 2.125  1.058  H193 REA 46 
REA H201 H201 H 0 0 N N N 24.620 23.168 25.369 5.026  0.871  1.762  H201 REA 47 
REA H202 H202 H 0 0 N N N 24.965 23.516 23.641 5.707  1.771  0.386  H202 REA 48 
REA H203 H203 H 0 0 N N N 24.360 24.822 24.717 3.952  1.795  0.685  H203 REA 49 
REA HO2  HO2  H 0 1 N N N 22.244 21.180 27.713 9.006  -0.469 -0.490 HO2  REA 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
REA C1  C2   SING N N 1  
REA C1  C6   SING N N 2  
REA C1  C16  SING N N 3  
REA C1  C17  SING N N 4  
REA C2  C3   SING N N 5  
REA C2  H21  SING N N 6  
REA C2  H22  SING N N 7  
REA C3  C4   SING N N 8  
REA C3  H31  SING N N 9  
REA C3  H32  SING N N 10 
REA C4  C5   SING N N 11 
REA C4  H41  SING N N 12 
REA C4  H42  SING N N 13 
REA C5  C6   DOUB N N 14 
REA C5  C18  SING N N 15 
REA C6  C7   SING N N 16 
REA C7  C8   DOUB N E 17 
REA C7  H7   SING N N 18 
REA C8  C9   SING N N 19 
REA C8  H8   SING N N 20 
REA C9  C10  DOUB N E 21 
REA C9  C19  SING N N 22 
REA C10 C11  SING N N 23 
REA C10 H10  SING N N 24 
REA C11 C12  DOUB N E 25 
REA C11 H11  SING N N 26 
REA C12 C13  SING N N 27 
REA C12 H12  SING N N 28 
REA C13 C14  DOUB N E 29 
REA C13 C20  SING N N 30 
REA C14 C15  SING N N 31 
REA C14 H14  SING N N 32 
REA C15 O1   DOUB N N 33 
REA C15 O2   SING N N 34 
REA C16 H161 SING N N 35 
REA C16 H162 SING N N 36 
REA C16 H163 SING N N 37 
REA C17 H171 SING N N 38 
REA C17 H172 SING N N 39 
REA C17 H173 SING N N 40 
REA C18 H181 SING N N 41 
REA C18 H182 SING N N 42 
REA C18 H183 SING N N 43 
REA C19 H191 SING N N 44 
REA C19 H192 SING N N 45 
REA C19 H193 SING N N 46 
REA C20 H201 SING N N 47 
REA C20 H202 SING N N 48 
REA C20 H203 SING N N 49 
REA O2  HO2  SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
REA SMILES           ACDLabs              12.01 "C1(CCCC(=C1\C=C\C(=C\C=C\C(=C\C(=O)O)C)C)C)(C)C"                                                                                                     
REA InChI            InChI                1.03  "InChI=1S/C20H28O2/c1-15(8-6-9-16(2)14-19(21)22)11-12-18-17(3)10-7-13-20(18,4)5/h6,8-9,11-12,14H,7,10,13H2,1-5H3,(H,21,22)/b9-6+,12-11+,15-8+,16-14+" 
REA InChIKey         InChI                1.03  SHGAZHPCJJPHSC-YCNIQYBTSA-N                                                                                                                           
REA SMILES_CANONICAL CACTVS               3.385 "CC1=C(\C=C\C(C)=C\C=C\C(C)=C\C(O)=O)C(C)(C)CCC1"                                                                                                     
REA SMILES           CACTVS               3.385 "CC1=C(C=CC(C)=CC=CC(C)=CC(O)=O)C(C)(C)CCC1"                                                                                                          
REA SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC1=C(C(CCC1)(C)C)/C=C/C(=C/C=C/C(=C/C(=O)O)/C)/C"                                                                                                   
REA SMILES           "OpenEye OEToolkits" 1.7.6 "CC1=C(C(CCC1)(C)C)C=CC(=CC=CC(=CC(=O)O)C)C"                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
REA "SYSTEMATIC NAME" ACDLabs              12.01 "retinoic acid"                                                                             
REA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2E,4E,6E,8E)-3,7-dimethyl-9-(2,6,6-trimethylcyclohexen-1-yl)nona-2,4,6,8-tetraenoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
REA "Create component"   1999-07-08 RCSB 
REA "Modify descriptor"  2011-06-04 RCSB 
REA "Other modification" 2016-10-18 RCSB 
#