1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
|
<html>
<head>
<title>Stag - Structured Tag Library</title>
</head>
<body>
<h1>Stag - Structured Tag Library</h1>
<table>
<tr>
<td valign="top" bgcolor="#000000">
<img src="images/celtic-stag.gif"></img>
</td>
<td>
The Stag project currently consists of two perl modules,
both of which are available from <a href="http://www.cpan.org">CPAN</a> or <a href="http://sourceforge.net/projects/stag">sourceforge</a>:
<h3>Data::Stag</h3>
This module is for manipulating data as recursively
nested tag/value pairs (<b>S</b>tructured <b>tag</b>s or <b>S</b>imple <b>T</b>ree
<b>ag</b>greggates). At this time there is only a perl
implementation, <a href="http://search.cpan.org/perldoc?Data::Stag">Data::Stag</a>, but C and Lisp implementations
are planned.
<br></br>
<br></br>
Stags can easily be represented as XML or as lisp-style
S-expressions, or using the Stag native indented text
format. They can also be represented in perl using nested
arrays.
<h3>DBIx::DBStag</h3>
This module is for conversion between relational
representations and hierarchical (Stag)
representations. SQL query results are automatically
decomposed into the relations and a hierarchical structure
is inferred. This modules also allows you to create SQL
templates - a powerful way of reusing SQL statements
joining multiple tables.
<br>
</br>
<a href="http://search.cpan.org/perldoc?DBIx::DBStag">DBIx::DBStag</a>
</td>
</tr>
</table>
<hr>
</hr>
<table>
<tr>
<td bgcolor="#FF8888">
<a
href="http://www.godatabase.org/cgi-bin/ubiq/ubiq.cgi">UBIQ Query Interface</a>
</td>
<td>
A demo of DBStag for mapping query results to hierarchical
tag-value data. This interface provides WWW access to a
number of bioinformatics databases (Gene Ontology, Ensembl, Chado,
BioSQL, GadFly). Templates can be selected, or you can
feed in your own SQL.
</td>
</tr>
<tr>
<td bgcolor="#FF8888">
<a href="http://sourceforge.net/projects/stag">Stag
project page on Sourceforge</a>
</td>
<td>
Here you can find the Stag CVS repository, mail lists, etc
</td>
</tr>
<tr>
<td bgcolor="#FF8888">
<a
href="http://www.fruitfly.org/~cjm/rel-talk/dbistag.html">DBStag Tutorial</a>
</td>
<td>
Brief tutorial on basic DBStag usage for biological
databases.
(slightly out of date - some aspects of DBStag may have changed)
</td>
</tr>
<tr>
<td bgcolor="#FF8888">
<a href="http://search.cpan.org/perldoc?DBIx::DBStag::Cookbook">DBIx::DBStag::Cookbook</a>
</td>
<td>
DBStag cookbook - shows how to generate a normalised
relational db from an XML source (the CIA world factbook),
create your own SQL templates and build a WWW query
interface
</td>
</tr>
<tr>
<td bgcolor="#FF8888">
<a href="http://search.cpan.org/perldoc?DBIx::DBStag::SQLTemplate">DBIx::DBStag::SQLTemplate</a>
</td>
<td>
The POD manpage describing SQL templates - a powerful way
of reusing complex SQL statements
</td>
</tr>
<tr>
<td bgcolor="#FF8888">
<a href="stag-poster.html">Stag Poster</a>
</td>
<td>
DBStag poster from Genome Informatics 2003 at Cold Spring Harbor
Laboratory (large image)
</td>
</tr>
</table>
<hr>
</hr>
<a href="http://sourceforge.net">
<img src="http://sourceforge.net/sflogo.php?group_id=68482&type=1" width="88" height="31" border="0" alt="SourceForge.net Logo"></img></a>
<hr>
</hr>
<address><a href="mailto:cjm@fruitfly.org">chris mungall</a></address>
<!-- Created: Tue Dec 3 11:47:11 PST 2002 -->
<!-- hhmts start -->
Last modified: Mon Apr 12 11:33:36 PDT 2004
<!-- hhmts end -->
</body>
</html>
|
