File: test.t

package info (click to toggle)
libdata-table-perl 1.78-3
  • links: PTS, VCS
  • area: main
  • in suites: bookworm, forky, sid, trixie
  • size: 556 kB
  • sloc: perl: 2,086; makefile: 2
file content (361 lines) | stat: -rw-r--r-- 13,409 bytes parent folder | download | duplicates (4)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
BEGIN { $| = 1; }
use strict;
use Test::More tests=>87;
use Data::Table;
#use Data::Dumper;

#$loaded = 1;
#print "ok loaded\n";

my $t = Data::Table::fromCSV("aaa.csv");
ok(defined($t), "fromCSV()");
ok($t->colIndex('Grams "(a.a.)"/100g sol.') == 3, "colIndex()");
ok($t->nofCol() == 6, "nofCol()");
ok($t->nofRow() == 9, "nofRow()");
ok($t->html() =~ /^<table/i, "html()");
ok($t->html2() =~ /^<table/i, "html2()");
ok($t->wiki() =~ /^\{\|/i, "wiki()");
ok($t->wiki2() =~ /^\{\|/i, "wiki2()");
ok($t->nofCol() == 6, "nofCol()");

my $fun = sub {return lc;};
ok($t->colMap(0,$fun)>0, "colMap()");
$fun = sub {$_->[0] = ucfirst $_->[0]};
ok($t->colsMap($fun)>0, "colsMap()");

my $row;
ok(($row = $t->delRow(0)) && $t->nofRow==8, "delRow()");
ok($t->addRow($row) && $t->nofRow==9, "addRow()");

my @rows;
ok((@rows = $t->delRows([0,2,3])) && $t->nofRow==6, "delRows()");
$t->addRow(shift @rows,0);
$t->addRow(shift @rows,2);
$t->addRow(shift @rows,3);

my $col;
ok($t->nofRow==9, "delRows() & addRow()");
ok(($col = $t->delCol("Solvent")) && $t->nofCol==5, "delCol()");
ok($t->addCol($col, "Solvent",2) && $t->nofCol==6, "addCol()");

my @cols;
ok((@cols = $t->delCols(["Temp, C","Amino acid","Entry"])) && $t->nofCol==3, "delCols()");
$t->addCol(shift @cols,"Temp, C",2);
$t->addCol(shift @cols,"Amino acid",0);
$t->addCol(shift @cols,"Entry",1);

ok($t->nofCol==6, "delCols() & addCol()");
ok($t->rowRef(3), "rowRef()");
ok($t->rowRefs(undef), "rowRefs()");
ok($t->row(3), "row()");
ok($t->colRef(3), "colRef()");
ok($t->colRefs(["Temp, C", "Amino acid", "Solvent"]), "colRefs()");
ok($t->col(3), "col()");
ok($t->rename("Entry", "New Entry"), "rename()");
$t->rename("New Entry", "Entry");

my @t = $t->col("Entry");
$t->replace("Entry", [1..$t->nofRow()], "New Entry");
ok($t->replace("New Entry",\@t, 'Entry'), "replace()");

ok($t->swap("Amino acid","Entry"), "swap()");
$t->swap("Amino acid","Entry");
ok($t->elm(3,"Temp, C")==79, "elm()");
ok(${$t->elmRef(3,"Temp, C")}==79, "elmRef()");
$t->setElm(3,"Temp, C", 100);
ok($t->elm(3,"Temp, C")==100, "setElm()");
$t->setElm(3,"Temp, C",79);
ok($t->sort('Ref No.',1,1,'Temp, C',1,0), "sort()");

my $t2;
ok(($t2=$t->match_pattern('$_->[0] =~ /^L-a/ && $_->[3]<0.2')) && $t2->nofRow()==2, "match_pattern()");
ok(($t2=$t->match_string('allo|cine')) && $t2->nofRow()==4, "match_string()");
ok($t2=$t->clone(), "clone()");
ok($t2=$t->subTable([2..4],[0..($t->nofCol()-1)]), "subTable()");
ok($t2=$t->subTable([2..4],undef), "subTable(\$rowIdcsRef,undef)");
ok(($t2=$t->subTable(undef,[0..($t->nofCol-1)]))&& ($t2->nofRow() == 9), "subTable(undef,\$colIDsRef)");
ok($t->rowMerge($t2) && $t->nofRow()==18, "rowMerge()");
$t->delRows([9..$t->nofRow-1]);
$t2=$t->subTable([0..($t->nofRow-1)],[1]);
$t2->rename(0, "new column");
ok($t->colMerge($t2) && $t->nofCol()==7, "colMerge()");
$t->delCol('new column');
$t->sort('Entry',Data::Table::STRING,Data::Table::ASC);
$t2 = Data::Table::fromTSV("aaa.tsv");
ok($t->tsv eq $t2->tsv, "fromTSV() and tsv()");
$t2 = $t->rowHashRef(1);
ok(scalar keys(%$t2) == $t->nofCol, "rowHashRef()");
$t2=Data::Table::fromCSV('aaa.csv');
is_deeply($t->rowRefs(), $t2->rowRefs(), "Looks good so far");
$t2->rename(0,'New1');
$t2->rename(1,'New2');
$t2->rename(2,'New3');
$t2->rename(3,'New4');
$t2->rename(4,'New5');
$t2->rename(5,'New6');
$t2->delRows([2,3,4]);
$t->delRows([0,8]);

my $t3 = $t->join($t2, 0, [0,1], [0,1]);
ok($t3->nofRow == 4, "join: inner");
$t3 = $t->join($t2, 1, [0,1], [0,1]);
ok($t3->nofRow == 7, "join: left outer");
$t3 = $t->join($t2, 2, [0,1], [0,1]);
ok($t3->nofRow == 6, "join: right outer");
$t3 = $t->join($t2, 3, [0,1], [0,1]);
ok($t3->nofRow == 9, "join: full outer");

$t = Data::Table->fromCSVi("aaa.csv");
$t2=Data::Table::fromCSV('aaa.csv');
is_deeply($t->rowRefs(), $t2->rowRefs(), "instant method fromCSVi");
$t = Data::Table->fromTSVi("aaa.tsv");
is_deeply($t->rowRefs(), $t2->rowRefs(), "instant method fromTSVi");

$t2 = $t->match_string("L-proline");
$t3 = $t->rowMask(\@Data::Table::OK, 1);
ok($t2->nofRow == 1 && $t3->nofRow == $t->nofRow - $t2->nofRow, "rowMask()"); 

my @h = $t2->header;
my @h2 = @h;
$h2[1] = "new name";
$t2->header(\@h2);
ok($t2->rename("new name", $h[1]), "header rename()");

$t = Data::Table->new(
  [
    ['Tom', 'male', 'IT', 65000],
    ['John', 'male', 'IT', 75000],
    ['Peter', 'male', 'HR', 85000],
    ['Mary', 'female', 'HR', 80000],
    ['Nancy', 'female', 'IT', 55000],
    ['Jack', 'male', 'IT', 88000],
    ['Susan', 'female', 'HR', 92000]
  ],
  ['Name', 'Sex', 'Department', 'Salary'], 0);

sub average {
  my @data = @_;
  my ($sum, $n) = (0, 0);
  foreach my $x (@data) {
    next unless $x;
    $sum += $x; $n++;
  }
  return ($n>0)?$sum/$n:undef;
}

$t2 = $t->group([],["Name", "Salary"], [sub {scalar @_}, \&average], ["Nof Employee", "Average Salary"], 0);
ok($t2->nofRow == 1 && $t2->elm(0,0) == 7, "group() with no key");
$t2 = $t->group(["Department","Sex"],["Name", "Salary"], [sub {scalar @_}, \&average], ["Nof Employee", "Average Salary"]);
ok($t2->nofRow == 4 && $t2->nofCol == 4, "group()");

$t2 = $t2->pivot("Sex", Data::Table::STRING, "Average Salary", ["Department"]);
#print $t2->html;
ok($t2->nofRow == 2 && $t2->nofCol == 3, "pivot()");

my $s = $t2->csv;
#open my $fh, "<", \$s or die "Cannot open in-memory file\n";
my $fh;
open($fh, "ccc.csv") or die "Cannot open ccc.csv to read\n";
my $t_fh=Data::Table::fromCSV($fh);
close($fh);
ok($t_fh->csv eq $s, "fromCSV() using file handler");
#print $t2->csv;

#my $s = $t2->tsv;
#open my $fh, "<", \$s or die "Cannot open in-memory file\n";
open($fh, "ccc.csv") or die "Cannot open ccc.csv to read\n";
$t_fh=Data::Table::fromTSV($fh);
close($fh);
ok($t_fh->tsv eq $s, "fromTSV() using file handler");
#print $t2->csv;

my $Well=["A_1", "A_2", "A_11", "A_12", "B_1", "B_2", "B_11", "B_12"];
$t = Data::Table->new([$Well], ["PlateWell"], 1);
$t->sort("PlateWell", 1, 0);
#print join(" ", $t->col("PlateWell"));
# in string sorting, "A_11" and "A_12" appears before "A_2";
my $my_sort_func = sub {
  my @a = split /_/, $_[0];
  my @b = split /_/, $_[1];
  return ($a[0] cmp $b[0]) || (int($a[1]) <=> int($b[1]));
};
$t->sort("PlateWell", $my_sort_func, 0);
#print join(" ", $t->col("PlateWell"));
#$t->sort("PlateWell", $my_sort_func, 1);
#print join(" ", $t->col("PlateWell"));

ok(join("", $t->col("PlateWell")) eq join("", @$Well), "sort using custom operator");

#open $fh, "<", \$s or die "Cannot open in-memory file\n";
open($fh, "colon.csv") or die "Cannot open colon.csv to read\n";
$t_fh=Data::Table::fromCSV($fh, 1, undef, {delimiter=>':', qualifier=>"'"});
close($fh);
  # col_A,col_B,col_C
  # 1,"2, 3 or 5",3.5
  # one,one:two,"double"", single'"
ok($t_fh->elm(0, 'col_B') eq "2, 3 or 5"
    && $t_fh->elm(1, 'col_B') eq "one:two"
    && $t_fh->elm(1, 'col_C') eq 'double", single\'',
    "using custom delimiter and qualifier for fromCSV()");

$t = Data::Table::fromCSV("bbb.csv", 1, undef, {skip_lines=>1, delimiter=>':', skip_pattern=>'^\s*#'});
$s = $t->tsv;
$t2 = Data::Table::fromTSV("aaa.tsv", 1);
is_deeply($t->rowRefs, $t2->rowRefs, "using skip_lines and skip_pattern for fromCSV()");

$t=Data::Table::fromFile("ttt.tsv", {transform_element=>0});
$t2=Data::Table::fromFile("ttt.csv");
is_deeply($t->rowRefs(), $t2->rowRefs(), "using fromFile, fromTSV, transform_element");

ok($t->html({odd=>'myOdd', even=>'myEven', header=>'myHeader'}), "using html with CSS class");

my %myRow=(COL_B=>'xyz');
$t->addRow(\%myRow, 1);
if ($t->nofRow==3) {
  is_deeply($t->rowRef(1), [undef, 'xyz'], "addRow() with hash_ref");
} else {
  ok(0, "addRow() with hash_ref, row was not added.");
}
#ok($t->addRow(\%myRow, 1) && $t->nofRow==3 && equal([$t->rowRef(1)], [[undef, 'xyz']]), "addRow() with hash_ref");

$t2 = $t->clone();
map {$t2->rename($_, $_."2")} $t2->header;
$t->rowMerge($t2, {byName => 1});
ok($t->nofRow == $t2->nofRow*2 && $t->nofCol == $t2->nofCol, "rowMerge() with byName=1");

$t->rowMerge($t2, {byName => 1, addNewCol => 1});
ok($t->nofRow == $t2->nofRow*3 && $t->nofCol == $t2->nofCol*2, "rowMerge() with byName=1 and addNewCol=1");

$t2->rename(0, 'COL_A');
$t2->rename(1, 'COL_B');
$t->rowMerge($t2, {byName => 0, addNewCol => 1});
ok($t->nofRow == $t2->nofRow*4 && $t->nofCol == $t2->nofCol, "rowMerge() with byName=0 and addNewCol=1");

$t=Data::Table::fromCSV("aaa.csv", 1);
$t2=$t->clone();
$t = $t->join($t2, 0, ['Amino acid'], ['Amino acid'], {renameCol => 1});
ok($t->nofRow == $t2->nofRow && $t->nofCol == $t2->nofCol*2-1, "join() with auto renaming duplicate column names");

$t=Data::Table::fromCSV("aaa.csv", 1);
$t2=$t->clone();
$t->colMerge($t2, {renameCol => 1});
ok($t->nofCol == $t2->nofCol*2, "colMerge() with auto renaming duplicate column names");

$t=Data::Table::fromCSV("aaa.csv", 1);
ok(($t2=$t->match_pattern_hash('$_{"Amino acid"} =~ /^L-a/ && $_{"Grams \"(a.a.)\"/100g sol."}<0.2')) && $t2->nofRow()==2, "match_pattern_hash()");

$t2 = $t->subTable($t->{OK}, undef, {useRowMask=>1});
#print Dumper($t2);
ok($t2->nofRow()==2, "subTable() with row mask");

$t2->moveCol('Amino acid', 1);
ok(($t2->header)[1] eq 'Amino acid', "moveCol()");

#Entry,Amino acid,Solvent,"Grams ""(a.a.)""/100g sol.","Temp, C",Ref No.
$t2->reorder(["Amino acid","Temp, C","Entry"]);
ok(($t2->header)[1] eq 'Temp, C', "reorder()");

$t = Data::Table->new([[1,1,5,6], [1,2,3,5], [2,1,6,1], [2,2,2,4]],
  ['id','time','x1','x2'], Data::Table::ROW_BASED);

$t2=Data::Table->new([],['id','count', 'rows']);
$t->each_group(['id'], sub { my ($t, $rows) = @_; $t2->addRow([$t->elm(0,'id'), $t->nofRow, join(":", @$rows)])});
$t3 = Data::Table->new([[1,2], [2,2], ['0:1','2:3']], ['id','count','rows'], Data::Table::COL_BASED);
is_deeply($t2->rowRefs, $t3->rowRefs, "group_each()");

$t2 = $t->melt(['id','time']);
ok($t2->nofRow == 8 && $t2->nofCol == 4, "melt()");

$t3 = $t2->cast(['id'],'variable',Data::Table::STRING,'value', \&average);
$t=Data::Table->new([[1,4,5.5], [2,4,2.5]], ['id','x1','x2'], Data::Table::ROW_BASED);
is_deeply($t3->rowRefs, $t->rowRefs, "cast()");

$t3 = $t2->cast(['id'],undef,Data::Table::STRING,'value', \&average);
$t=Data::Table->new([[1,4.75], [2,3.25]], ['id','(all)'], Data::Table::ROW_BASED);
is_deeply($t3->rowRefs, $t->rowRefs, "cast() without column to split");

$t3 = $t2->cast(undef,undef,Data::Table::STRING,'value', \&average);
$t=Data::Table->new([[4]], ['(all)'], Data::Table::ROW_BASED);
is_deeply($t3->rowRefs, $t->rowRefs, "cast() with total aggregate");

my $t_product=Data::Table::fromFile("Product.csv");

my $callback = sub {
  my ($tag, $row, $col, $colName, $table) = @_;
  if ($row >=0 && $colName eq 'UnitPrice') {
    $tag->{'style'} = 'background-color:'. (($table->elm($row, $col)>=20) ? '#fc8d59':'#91bfdb') . ';';
  }
  if ($row >=0 && $colName eq 'Discontinued') {
    $tag->{'style'} = 'background-color:'. (($table->elm($row, $col) eq 'TRUE') ? '#999999':'#af8dc3') .';';
  }
  return $tag;
};

#check callback function
ok($t_product->html(["","",""], undef, undef, undef, undef, undef, $callback) =~ /#999999/, "html() with callback");
ok($t_product->html2(["","",""], undef, undef, undef, undef, $callback) =~ /#999999/, "html2() with callback");
ok($t_product->wiki(["","",""], undef, undef, undef, undef, undef, $callback) =~ /#999999/, "wiki() with callback");
ok($t_product->wiki2(["","",""], undef, undef, undef, undef, $callback) =~ /#999999/, "wiki2() with callback");

$t_product->match_pattern_hash('$_{UnitPrice} > 20');
$t_product->addCol('No', 'IsExpensive');
ok($t_product->lastCol == 6 && $t_product->elm(0, 'IsExpensive') eq 'No', "addCol() with default value");

ok(@{$t_product->{MATCH}} == 37, "{MATCH} after match_pattern_hash");

$t_product->setElm($t_product->{MATCH}, 'IsExpensive', 'Yes');
ok($t_product->elm($t_product->{MATCH}->[0], 'IsExpensive') eq 'Yes',
    "setElm() for multiple cells");

my $cnt = 0;
my $next = $t_product->iterator();
while (my $row = &$next) {
  $cnt ++;
  $t_product->setElm(&$next(1), 'ProductName', 'New! '.$row->{ProductName});
}

ok($cnt == 77 && $t_product->elm(0, 'ProductName') =~ /^New!/,
    "iterator()");

$t_product->addRow({NewColumn=>'xyz',CategoryName=>'myname'}, undef, {addNewCol=>1});
ok($t_product->hasCol('NewColumn') && $t_product->elm($t_product->lastRow, 'NewColumn') eq 'xyz',
    "addRow() that adds a column");

# use DBI;
# $dbh= DBI->connect("DBI:mysql:test", "test", "") or die $dbh->errstr;
# $t = Data::Table::fromSQL($dbh, "show tables");
# print $t->csv;
# $t = Data::Table->fromSQLi($dbh, "show tables");
# print $t->csv;

# @_ in match_
package FOO;
our @ISA = qw(Data::Table);

1;

package main;

my $foo=FOO->new([[11,12],[21,22],[31,32]],['header1','header2'],0);
ok($foo->csv ne '', "Inheritance");

$foo = FOO->fromCSVi("aaa.csv");
ok($foo->csv ne '', "inheritated instant method fromCSVi");

# no longer needed, use is_deep instead
#sub equal {
#  return is_deeply($data, $data2);
#  my ($data, $data2) = @_;
#  my ($i ,$j);
#  return 0 if (scalar @$data != scalar @$data2);
#  for ($i=0; $i< scalar @$data; $i++) {
#    return 0 if (scalar @{$data->[$i]} != scalar @{$data2->[$i]});
#    for ($j=0; $j< scalar @{$data->[0]}; $j++) {
#      if (!defined($data->[$i]->[$j]) || !defined($data2->[$i]->[$j])) {
#        return 0 if (defined($data->[$i]->[$j]) || defined($data2->[$i]->[$j]));
#      }
#      return 0 if ("".$data->[$i]->[$j] ne "".$data2->[$i]->[$j]);
#    }
#  }
#  return 1;
#}