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package Demeter::UI::Athena::Group;
use strict;
use warnings;
use Demeter::UI::Wx::SpecialCharacters qw(:all);
use Demeter::UI::Athena::ChangeDatatype;
use Cwd;
use Chemistry::Elements qw(get_name);
use List::Util qw(min);
use Spreadsheet::WriteExcel;
use Wx qw(:everything);
use Wx::Event qw(EVT_CHAR);
use base qw( Exporter );
our @EXPORT = qw(Rename Copy Remove change_datatype tie_reference Report set_text_buffer OnChar);
sub Rename {
my ($app, $newname) = @_;
return if $app->is_empty;
my $data = $app->current_data;
my $name = $data->name;
(my $realname = $name) =~ s{\A\s*(Ref\s+)}{};
my $is_ref = $1;
if (not $newname) {
my $ted = Wx::TextEntryDialog->new($app->{main}, "Enter a new name for \"$name\":", "Rename \"$name\"", q{}, wxOK|wxCANCEL, Wx::GetMousePosition);
$app->set_text_buffer($ted, "rename");
$ted->SetValue($name);
if ($ted->ShowModal == wxID_CANCEL) {
$app->{main}->status("Renaming canceled.");
$app->{rename_pointer} = $#{$app->{rename_buffer}};
return;
};
$newname = $ted->GetValue;
};
$app->update_text_buffer("rename", $newname, 0);
my $sel = scalar $app->{main}->{list}->GetSelection;
my $is_checked = $app->{main}->{list}->IsChecked($sel);
my $prefix = ($is_ref) ? " Ref " : q{};
$data->name($prefix.$newname);
$app->{main}->{list}->SetString($app->current_index, $prefix.$newname);
$realname = quotemeta($realname);
if (($data->reference) and ($data->reference->name =~ m{\A\s*(?:Ref\s+)?$realname\s*\z})) {
my $prefix = ($is_ref) ? q{} : " Ref ";
$data->reference->name($prefix.$newname);
foreach my $i (0 .. $app->{main}->{list}->GetCount-1) {
next if ($app->{main}->{list}->GetIndexedData($i) ne $data->reference);
$app->{main}->{list}->SetString($i, $prefix.$newname);
};
};
$app->OnGroupSelect(0,0,0);
$app->{main}->{list}->Check($sel, $is_checked);
$app->modified(1);
$app->{main}->status("Renamed $name to $newname");
};
sub Copy {
my ($app, $newname) = @_;
return if $app->is_empty;
$newname ||= q{};
my $data = $app->current_data;
my $clone = $data->Clone;
if (not $newname) {
my $largest = 0;
(my $snip = $data->name) =~ s{Copy\s+(\d+\s+)?of\s+}{};
foreach my $i (0 .. $app->{main}->{list}->GetCount-1) {
my $this = $app->{main}->{list}->GetIndexedData($i)->name;
++$largest if ($this =~ m{$snip\z});
};
$newname = "Copy $largest of $snip";
};
$clone->name($newname);
$clone->xdi_make_clone($data, q{}, 0) if (Demeter->xdi_exists);
my $index = $app->current_index;
my $checked = $app->{main}->{list}->IsChecked($index);
if ($index == $app->{main}->{list}->GetCount-1) {
$app->{main}->{list}->AddData($clone->name, $clone);
} else {
$app->{main}->{list}->InsertData($clone->name, $index+1, $clone);
};
$app->{main}->{list}->Check($index+1, $checked);
$app->modified(1);
$clone->_update('fft');
$app->{main}->status("Copied ".$data->name);
$app->heap_check(0);
return $clone;
};
sub Remove {
my ($app, $how) = @_;
$how ||= 'current';
return if $app->is_empty;
my $message = q{};
my $i;
if ($how eq 'current') {
$i = $app->current_index;
$message = "Removed ".$app->current_data->name;
remove_one($app, $i);
if ($app->{main}->{list}->GetCount > 0) {
$i = min($i, $app->{main}->{list}->GetCount-1);
$app->{main}->{list}->SetSelection($i);
$app->OnGroupSelect(0,0,0);
};
$app->modified(1);
} elsif ($how eq 'marked') {
$i = $app->current_index;
$message = "Removed marked groups";
foreach my $j (reverse (0 .. $app->{main}->{list}->GetCount-1)) {
if ($app->{main}->{list}->IsChecked($j)) {
remove_one($app, $j);
$i = $j;
};
};
if ($app->{main}->{list}->GetCount > 0) {
$i = min($i, $app->{main}->{list}->GetCount-1);
$app->{main}->{list}->SetSelection($i);
$app->OnGroupSelect(0,0,0);
};
$app->modified(1);
} elsif ($how eq 'all') {
$message = "Discarded entire project";
if ($app->{modified}) {
## offer to save project....
my $yesno = Demeter::UI::Wx::VerbDialog->new($app->{main}, -1,
"Save this project before closing?",
"Save project?",
'Save', 1);
my $result = $yesno->ShowModal;
if ($result == wxID_CANCEL) {
$app->{main}->status("Not exiting Athena after all.");
return 0;
};
$app -> Export('all', $app->{main}->{currentproject}) if $result == wxID_YES;
};
foreach my $i (0 .. $app->{main}->{list}->GetCount-1) {
my $this = $app->{main}->{list}->GetIndexedData($i);
$this->clear_ifeffit_titles;
$this->dispense('process', 'erase', {items=>"\@group " . $this->group});
$this->DEMOLISH;
};
$app->{main}->{list}->ClearAll;
$app->{main}->{list}->{datalist} = [];
$app->Clear;
$app->{main}->{views}->SetSelection(0);
};
if ($app->is_empty) {
$app->{main}->{Main}->zero_values;
$app->{main}->{Main}->mode(0,0,0);
$app->{selected} = -1;
$app->modified(0);
};
$app->{main}->status($message);
};
sub remove_one {
my ($app, $i) = @_;
my $data = $app->{main}->{list}->GetIndexedData($i);
$data->clear_ifeffit_titles;
$data->dispense('process', 'erase', {items=>"\@group " . $data->group});
$data->DEMOLISH;
$app->{main}->{list}->DeleteData($i); # this calls the selection event on the new item
};
sub change_datatype {
my ($app) = @_;
if ($app->is_empty) {
$app->{main}->status("No data!");
return;
};
my $cdt = Demeter::UI::Athena::ChangeDatatype->new($app->{main}, $app);
my $result = $cdt -> ShowModal;
if ($result == wxID_CANCEL) {
$app->{main}->status("Not changing datatype.");
return;
};
my $is_nor = ($cdt->{to}->GetSelection == 2) ? 1 : 0;
my $newtype = ($cdt->{to}->GetSelection == 0) ? 'xmu'
: ($cdt->{to}->GetSelection == 1) ? 'xanes'
: ($cdt->{to}->GetSelection == 2) ? 'xmu'
: ($cdt->{to}->GetSelection == 3) ? 'chi'
: ($cdt->{to}->GetSelection == 4) ? 'xmudat'
: 'xmu';
if ($cdt->{how}->GetSelection == 0) {
$app->current_data->datatype($newtype);
$app->current_data->is_nor($is_nor);
$app->current_data->update_norm(1) if (scalar $cdt->{to}->GetSelection != 3);
$app->{main}->status("Changed current group's data type to $newtype");
} elsif ($cdt->{how}->GetSelection == 1) {
foreach my $j (0 .. $app->{main}->{list}->GetCount-1) {
if ($app->{main}->{list}->IsChecked($j)) {
$app->{main}->{list}->GetIndexedData($j)->datatype($newtype);
$app->{main}->{list}->GetIndexedData($j)->is_nor($is_nor);
$app->{main}->{list}->GetIndexedData($j)->update_norm(1) if ($cdt->{to}->GetSelection != 3);
};
};
$app->{main}->status("Changed all marked groups to data type $newtype");
} else {
foreach my $j (0 .. $app->{main}->{list}->GetCount-1) {
$app->{main}->{list}->GetIndexedData($j)->datatype($newtype);
$app->{main}->{list}->GetIndexedData($j)->is_nor($is_nor);
$app->{main}->{list}->GetIndexedData($j)->update_norm(1) if ($cdt->{to}->GetSelection != 3);
};
$app->{main}->status("Changed all groups to data type $newtype");
};
$app->modified(1);
$app->{main}->{Main}->mode($app->current_data, 1, 0);
};
sub tie_reference {
my ($app) = @_;
my @marked = ();
foreach my $j (0 .. $app->{main}->{list}->GetCount-1) {
push(@marked, $app->{main}->{list}->GetIndexedData($j))
if $app->{main}->{list}->IsChecked($j);
};
if ($#marked != 1) {
$app->{main}->status("You must mark two and only two datagroups to tie as data and reference.");
return;
};
if ($marked[0]->datatype !~ m{xanes|xmu}) {
$app->{main}->status($marked[0]->name . " is not a $MU(E) datagroup");
return;
};
if ($marked[1]->datatype !~ m{xanes|xmu}) {
$app->{main}->status($marked[1]->name . " is not a $MU(E) datagroup");
return;
};
$_->untie_reference foreach @marked;
$marked[0]->reference($marked[1]);
$app->OnGroupSelect(0,0,0);
$app->{main}->status(sprintf("Tied %s and %s as data and reference", $marked[0]->name, $marked[1]->name));
};
sub Report {
my ($app, $how, $fname) = @_;
$how ||= 'all';
if (not $fname) {
my $fd = Wx::FileDialog->new( $app->{main}, "Save spreadsheet report", cwd, q{athena.xls},
"Athena project (*.xls)|*.xls|All files (*)|*",
wxFD_SAVE|wxFD_CHANGE_DIR|wxFD_OVERWRITE_PROMPT,
wxDefaultPosition);
if ($fd->ShowModal == wxID_CANCEL) {
$app->{main}->status("Saving report canceled.");
return;
};
$fname = $fd->GetPath;
#return if $::app->{main}->overwrite_prompt($fname); # work-around gtk's wxFD_OVERWRITE_PROMPT bug (5 Jan 2011)
};
my $workbook;
{
## The evals in Spreadsheet::WriteExcel::Workbook::_get_checksum_method
## will set the eval error variable ($@) if any of Digest::XXX
## (XXX = MD4 | PERL::MD4 | MD5) are installed on the machine.
## This is not a problem -- crypto is not needed in the exported
## Excel file. However, setting $@ will post a warning given that
## $SIG{__DIE__} is defined to use Wx::Perl::Carp. So I need to
## locally undefine $SIG{__DIE__} to avoid having a completely
## pointless error message posted to the screen when the S::WE
## object is instantiated
local $SIG{__DIE__} = undef;
$workbook = Spreadsheet::WriteExcel->new($fname);
};
my $worksheet = $workbook->add_worksheet();
header($workbook, $worksheet, 5);
my $r = 7;
foreach my $i (0 .. $app->{main}->{list}->GetCount-1) {
next if (($how eq 'marked') and (not $app->{main}->{list}->IsChecked($i)));
row($workbook, $worksheet, $r, $app->{main}->{list}->GetIndexedData($i));
++$r;
};
$workbook->close;
$app->{main}->status("Wrote spreadsheet report to ".$fname);
};
sub header {
my ($workbook, $worksheet, $i) = @_;
my $grouphead = $workbook->add_format();
$grouphead -> set_bold;
$grouphead -> set_bg_color('grey');
$grouphead -> set_align('left');
$worksheet->merge_range(1, 0, 1, 31, "Athena report -- ".$::app->current_data->identify, $grouphead);
$worksheet->merge_range(2, 0, 2, 31, "This file created at ".$::app->current_data->now, $grouphead);
$worksheet->merge_range(3, 0, 3, 31, join(", ",
$::app->current_data->environment,
"Wx ".$Wx::VERSION,
"Spreadsheet::WriteExcel ".$Spreadsheet::WriteExcel::VERSION,
),
$grouphead);
$worksheet->merge_range($i, 6, $i, 18, "Background removal parameters", $grouphead);
$worksheet->merge_range($i, 20, $i, 24, "Forward Fourier transform parameters", $grouphead);
$worksheet->merge_range($i, 26, $i, 28, "Backward Fourier transform parameters", $grouphead);
$worksheet->merge_range($i, 30, $i, 31, "Plotting parameters", $grouphead);
my $colhead = $workbook->add_format();
$colhead -> set_bold;
$colhead -> set_bg_color('grey');
$colhead -> set_align('center');
$worksheet->write($i+1, 0, "Group", $colhead);
$worksheet->write($i+1, 1, "Element", $colhead);
$worksheet->write($i+1, 2, "Edge", $colhead);
$worksheet->write($i+1, 3, "Importance", $colhead);
$worksheet->write($i+1, 4, "Edge shift", $colhead);
$worksheet->write($i+1, 6, "E0", $colhead);
$worksheet->write($i+1, 7, "Algorithm", $colhead);
$worksheet->write($i+1, 8, "Rbkg", $colhead);
$worksheet->write($i+1, 9, "k-weight", $colhead);
$worksheet->write($i+1,10, "Normalization order", $colhead);
$worksheet->write($i+1,11, "Pre-edge range", $colhead);
$worksheet->write($i+1,12, "Normalization range", $colhead);
$worksheet->write($i+1,13, "Spline range (k)", $colhead);
$worksheet->write($i+1,14, "Spline range (E)", $colhead);
$worksheet->write($i+1,15, "Edge step", $colhead);
$worksheet->write($i+1,16, "Standard", $colhead);
$worksheet->write($i+1,17, "Lower clamp", $colhead);
$worksheet->write($i+1,18, "Upper clamp", $colhead);
$worksheet->write($i+1,20, "k-range", $colhead);
$worksheet->write($i+1,21, "dk", $colhead);
$worksheet->write($i+1,22, "Window", $colhead);
$worksheet->write($i+1,23, "Arb. kw", $colhead);
$worksheet->write($i+1,24, "Phase correction", $colhead);
$worksheet->write($i+1,26, "R-range", $colhead);
$worksheet->write($i+1,27, "dR", $colhead);
$worksheet->write($i+1,28, "Window", $colhead);
$worksheet->write($i+1,30, "Plot multiplier", $colhead);
$worksheet->write($i+1,31, "y offset", $colhead);
};
sub row {
my ($workbook, $worksheet, $i, $data) = @_;
my $center = $workbook->add_format();
$center -> set_align('center');
my $number = $workbook->add_format();
$number -> set_align('center');
$number -> set_num_format('0.000');
my $exponent = $workbook->add_format();
$exponent -> set_align('center');
$exponent -> set_num_format(0x0b);
$worksheet->write($i, 0, sprintf(" %s", $data->name));
$worksheet->write($i, 1, get_name($data->bkg_z), $center);
$worksheet->write($i, 2, ucfirst($data->fft_edge), $center);
$worksheet->write($i, 3, $data->importance, $center);
$worksheet->write($i, 4, $data->bkg_eshift, $number);
$worksheet->write($i, 6, $data->bkg_e0, $number);
$worksheet->write($i, 7, $data->bkg_algorithm, $center);
$worksheet->write($i, 8, $data->bkg_rbkg, $number);
$worksheet->write($i, 9, $data->bkg_kw, $center);
$worksheet->write($i,10, $data->bkg_nnorm, $center);
$worksheet->write($i,11, sprintf("[ %.3f : %.3f ]", $data->bkg_pre1, $data->bkg_pre2 ), $center);
$worksheet->write($i,12, sprintf("[ %.3f : %.3f ]", $data->bkg_nor1, $data->bkg_nor2 ), $center);
$worksheet->write($i,13, sprintf("[ %.3f : %.3f ]", $data->bkg_spl1, $data->bkg_spl2 ), $center);
$worksheet->write($i,14, sprintf("[ %.3f : %.3f ]", $data->bkg_spl1e, $data->bkg_spl2e), $center);
$worksheet->write($i,15, $data->bkg_step, $exponent);
my $stan = ($data->bkg_stan ne 'None') ? $data->bkg_stan->name : 'None';
$worksheet->write($i,16, $stan, $center);
$worksheet->write($i,17, ucfirst($data->number2clamp($data->bkg_clamp1)), $center);
$worksheet->write($i,18, ucfirst($data->number2clamp($data->bkg_clamp2)), $center);
$worksheet->write($i,20, sprintf("[ %.3f : %.3f ]", $data->fft_kmin, $data->fft_kmax ), $center);
$worksheet->write($i,21, $data->fft_dk, $number);
$worksheet->write($i,22, $data->fft_kwindow, $center);
$worksheet->write($i,23, $data->fit_karb_value, $center);
$worksheet->write($i,24, $data->yesno($data->fft_pc), $center);
$worksheet->write($i,26, sprintf("[ %.3f : %.3f ]", $data->bft_rmin, $data->bft_rmax ), $center);
$worksheet->write($i,27, $data->bft_dr, $number);
$worksheet->write($i,28, $data->bft_rwindow, $center);
$worksheet->write($i,30, $data->plot_multiplier, $exponent);
$worksheet->write($i,31, $data->y_offset, $number);
};
1;
=head1 NAME
Demeter::UI::Athena::Group - data group functionality
=head1 VERSION
This documentation refers to Demeter version 0.9.26.
=head1 SYNOPSIS
This module provides functionality for data groups in Athena
=head1 DEPENDENCIES
Demeter's dependencies are in the F<Build.PL> file.
=head1 BUGS AND LIMITATIONS
Please report problems to the Ifeffit Mailing List
(L<http://cars9.uchicago.edu/mailman/listinfo/ifeffit/>)
Patches are welcome.
=head1 AUTHOR
Bruce Ravel, L<http://bruceravel.github.io/home>
=head1 LICENCE AND COPYRIGHT
Copyright (c) 2006-2019 Bruce Ravel (L<http://bruceravel.github.io/home>). All rights reserved.
This module is free software; you can redistribute it and/or
modify it under the same terms as Perl itself. See L<perlgpl>.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
=cut
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