1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304
|
//
// This file is part of libGDF.
//
// libGDF is free software: you can redistribute it and/or modify
// it under the terms of the GNU Lesser General Public License as
// published by the Free Software Foundation, either version 3 of
// the License, or (at your option) any later version.
//
// libGDF is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
// GNU Lesser General Public License for more details.
//
// You should have received a copy of the GNU Lesser General Public License
// along with libGDF. If not, see <http://www.gnu.org/licenses/>.
//
// Copyright 2013 Owen Kelly
#include "config-tests.h"
#include <GDF/Writer.h>
#include <GDF/Reader.h>
#include <GDF/TagHeader.h>
#include <GDF/EventDescriptor.h>
//#include <GDF/TagFields.h>
#include <iostream>
#include <stdio.h>
#include <sys/stat.h>
using namespace std;
const string testfile = "test.gdf.tmp";
const string annotfile = string(GDF_SOURCE_ROOT)+"/sampledata/Header3Tag1.gdf";
const string eventcodefile = string(GDF_SOURCE_ROOT)+"/libgdf/eventcodes.txt";
bool fexist( std::string filename )
{
std::ifstream f( filename.c_str(), std::ios_base::in );
if( f.fail() )
return false;
f.close( );
return true;
}
size_t fsize( std::string filename )
{
struct stat filestatus;
stat( filename.c_str(), &filestatus );
return filestatus.st_size;
}
bool fcompare( std::string fileA, std::string fileB )
{
std::ifstream f1( fileA.c_str(), std::ios_base::in | std::ios_base::binary );
std::ifstream f2( fileB.c_str(), std::ios_base::in | std::ios_base::binary );
bool state = true;
size_t ofs = 0;
while( !( f1.eof() || f2.eof() ) )
{
unsigned char a, b;
f1 >> a;
f2 >> b;
if( a != b )
{
cout << ofs << " : " << (int)a << " ... " << (int)b << endl;
state = false;
}
ofs++;
}
return state;
}
int main( )
{
std::vector<string> infilelist; // a list of files on which to run tests
infilelist.push_back(annotfile);
string reffile;
try
{
for(size_t file_count=0; file_count < infilelist.size(); file_count++)
{
reffile = infilelist[file_count]; // file to be tested in this loop iteration
cout << "Creating Writer instance." << endl;
gdf::Writer w;
cout << "Creating Reader instance." << endl;
gdf::Reader r;
r.enableCache( false );
cout << "Opening '" << reffile << "' for reading." << endl;
r.open( reffile );
cout << "Copying Header information." << endl;
w.getMainHeader( ).copyFrom( r.getMainHeader_readonly() );
w.getHeaderAccess().setRecordDuration( r.getMainHeader_readonly().get_datarecord_duration( 0 ), r.getMainHeader_readonly().get_datarecord_duration( 1 ) );
for( size_t m=0; m<w.getMainHeader_readonly().get_num_signals(); m++ )
{
w.createSignal( m, true );
w.getSignalHeader( m ).copyFrom( r.getSignalHeader_readonly( m ) );
}
w.setEventMode( r.getEventHeader()->getMode() );
w.setEventSamplingRate( r.getEventHeader()->getSamplingRate() );
// Copy GDF header 3 including user-specific event description table
gdf::TagHeader input_file_tag_header = r.getHeaderAccess_readonly().getTagHeader_readonly();
w.getHeaderAccess().getTagHeader().copyFrom( input_file_tag_header );
if( 0 ) {
// Test fails on this branch (because new events are put in the
// file so input and output files are not the same), however
// it is an instructive code branch to walk through.
/// Demonstration of event description storage.
//
/// Workflow 1: Create event description tables from an aritrary collection of strings.
// Each new string encountered is assigned a unique eventType beginning with eventType==1.
gdf::EventDescriptor free_text_annotator;
gdf::uint16 eventType;
//
// Phase 1 Option 1. Create event description tables from an aritrary collection of strings.
// Each new string encountered is assigned a unique eventType beginning with eventType==1.
free_text_annotator.clear();
eventType = free_text_annotator.addUserSpecificDesc("yellow"); // 1
eventType = free_text_annotator.addUserSpecificDesc("green"); // 2
eventType = free_text_annotator.addUserSpecificDesc("blue"); // 3
eventType = free_text_annotator.addUserSpecificDesc("yellow"); // 1. If same string is encountered, the existing eventType is returned.
cout << "Text 'yellow' was assigned event #" << eventType << "." << endl;
free_text_annotator.loadEventDescriptions(eventcodefile);
//
// Phase X. At any time after Phase 1, use the table to get Event TYP's or event description strings
eventType = free_text_annotator.getUserDescEventType("blue"); // 3
// eventType = free_text_annotator.getUserDescEventType("turquoise"); // error, turquoise is not in the table.
std::string a_description = free_text_annotator.getEventDesc(2); // user-specified descriptions
a_description = free_text_annotator.getEventDesc(257); // standard description
a_description = free_text_annotator.getEventDesc(33); // unknown user-specified description
a_description = free_text_annotator.getEventDesc(4000); // unknown description
//
// Phase 1 Option 2: Associate specific event codes to a collection of strings.
free_text_annotator.clear();
free_text_annotator.loadEventDescriptions(eventcodefile);
free_text_annotator.setEventDesc(33,"yellow");
// eventType = free_text_annotator.setEventDesc(34,"yellow"); // Unpredicatable result, don't do this.
free_text_annotator.setEventDesc(4,"green");
free_text_annotator.setEventDesc(17,"blue");
free_text_annotator.copyEventDescToUserDesc();
//
// Phase X. At any time after Phase 1, use the table to get Event TYP's or event description strings
eventType = free_text_annotator.getUserDescEventType("blue");
a_description = free_text_annotator.getEventDesc(4);
a_description = free_text_annotator.getEventDesc(257);
a_description = free_text_annotator.getEventDesc(33);
//
// Phase 2. Store the tables into header before opening file for write.
w.getHeaderAccess().getTagHeader().setEventDescriptor(free_text_annotator);
w.getHeaderAccess().getTagHeader().finalize();
//
// Phase 3. Open file for write.
cout << "Opening '" << testfile << "' for annotation demonstration." << endl;
w.open( testfile, gdf::writer_ev_memory | gdf::writer_overwrite );
//
// Phase 4. Create events at specific times in the file. Use existing strings.
switch( w.getHeaderAccess().getEventHeader().getMode() )
{
case 1: {
gdf::Mode1Event ev;
w.makeFreeTextEvent( 3.14159, "green", free_text_annotator, ev );
w.addEvent( ev );
w.makeFreeTextEvent( 43.9, "yellow", free_text_annotator, ev );
w.addEvent( ev );
w.makeFreeTextEvent( 19.1, "green", free_text_annotator, ev );
w.addEvent( ev );
} break;
case 3: {
gdf::Mode3Event ev;
w.makeFreeTextEvent( 3.14159, "green", free_text_annotator, ev );
ev.channel = 1; // for example, the text could be associated to any specific channel
w.addEvent( ev );
w.makeFreeTextEvent( 43.9, "yellow", free_text_annotator, ev );
ev.channel = 2;
w.addEvent( ev );
w.makeFreeTextEvent( 19.1, "green", free_text_annotator, ev );
ev.channel = 3;
w.addEvent( ev );
} break;
default:
break;
}
// Phase 5. Continue with other file writing tasks, including w.makeFreeTextEvent/w.addEvent.
// Events are buffered and written at w.close().
// Phase 6. w.close().
}
else
{
cout << "Opening '" << testfile << "' for writing." << endl;
w.open( testfile, gdf::writer_ev_memory | gdf::writer_overwrite );
}
cout << "Copying data .... ";
size_t num_recs = boost::numeric_cast<size_t>( r.getMainHeader_readonly( ).get_num_datarecords( ) );
for( size_t n=0; n<num_recs; n++ )
{
gdf::Record *rec = w.acquireRecord( );
r.readRecord( n, rec );
w.addRecord( rec );
}
cout << "OK" << endl;
cout << "Copying events .... ";
gdf::EventHeader* ev_header = r.getEventHeader();
unsigned int num_events = ev_header->getNumEvents();
gdf::EventDescriptor & ev_descriptor_from_input = input_file_tag_header.getEventDescriptor();
switch( ev_header->getMode() )
{
default: throw(std::runtime_error("ERROR -- Invalid event mode!"));
case 1: {
gdf::Mode1Event ev, ev_out;
for(unsigned int m = 0; m < num_events; m++)
{
ev_header->getEvent(m, ev);
if( ev.type == 0 )
{
throw(std::runtime_error("ERROR -- event TYP 0"));
}
else if( ev.type < 256 )
{
// case: user-specified event description
// Here we could do simply w.addEvent(ev); and the event
// with user-specified text would be written successfully to output.
// However, for the sake of demonstration and testing, we will unpack
// the event here and re-create it before storing it.
// unpacking steps:
std::string description_of_this_event = ev_descriptor_from_input.getEventDesc(ev.type);
double ev_time_sec = r.getEventHeader()->posToSec( ev.position );
cout << description_of_this_event << endl;
// recreating the free text event from time and string:
w.makeFreeTextEvent(ev_time_sec, description_of_this_event, ev_descriptor_from_input, ev_out);
w.addEvent(ev_out);
}
else
{
// case: standard event description from eventcodes.txt
std::string description_of_this_event = ev_descriptor_from_input.getEventDesc(ev.type);
cout << description_of_this_event << endl;
w.addEvent(ev);
}
}
} break;
case 3: {
gdf::Mode3Event ev;
// Copy all event from source file to target file.
// Mode 1 and 3 events are copied.
for(unsigned int mm = 0; mm < num_events; mm++)
{
ev_header->getEvent(mm, ev);
w.addEvent(ev);
}
} break;
}
cout << "OK" << endl;
w.close( );
cout << "Comparing files .... ";
if( !fcompare( reffile, testfile ) )
{
cout << "Failed." << endl;
return 1;
}
cout << "OK" << endl;
cout << "Removing " << testfile << endl << endl;
remove( testfile.c_str() );
}
return 0; // test succeeded
}
catch( std::exception &e )
{
std::cout << "Caught Exception: " << e.what( ) << endl;
}
catch( ... )
{
std::cout << "Caught Unknown Exception." << endl;
}
return 1; // test failed
}
|