1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
|
/////////////////////////////////////////////////////////////////////////////
// File: gnSourceHeader.cpp
// Purpose: Source Header class
// Description: Provides an interface for Headers on disk.
// Changes:
// Version: libGenome 0.5.1
// Author: Aaron Darling
// Modified by:
// Copyright: (c) Aaron Darling
// Licenses: See COPYING file for details
/////////////////////////////////////////////////////////////////////////////
#ifdef HAVE_CONFIG_H
#include "config.h"
#endif
#include <string>
#include "libGenome/gnBaseSource.h"
#include "libGenome/gnSourceHeader.h"
using namespace std;
namespace genome {
gnSourceHeader::gnSourceHeader(){
m_source = NULL;
m_start = 0;
m_length = 0;
}
gnSourceHeader::gnSourceHeader( gnBaseSource* source, const string& name, const uint32 begin, const uint32 length ){
m_source = source;
m_name = string(name);
m_start = begin;
m_length = length;
}
gnSourceHeader::gnSourceHeader(const gnSourceHeader& s){
m_source = s.m_source;
m_start = s.m_start;
m_length = s.m_length;
m_name = string(s.m_name);
}
gnSourceHeader::~gnSourceHeader(){
};
string gnSourceHeader::GetHeader() const{
Array<char> array_buf( m_length );
char* buf = array_buf.data;
gnSeqI readBytes = m_length;
m_source->Read(m_start, buf, readBytes);
string rval(buf, readBytes);
return rval;
}
} // end namespace genome
|
