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/////////////////////////////////////////////////////////////////////////////
// File: gnStringHeader.h
// Purpose: abstract Header class
// Description: Provides an interface for Headers in memory.
// Changes:
// Version: libGenome 0.5.1
// Author: Aaron Darling
// Modified by:
// Copyright: (c) Aaron Darling
// Licenses: See COPYING file for details
/////////////////////////////////////////////////////////////////////////////
#ifdef HAVE_CONFIG_H
#include "config.h"
#endif
#ifndef _gnStringHeader_h_
#define _gnStringHeader_h_
#include "libGenome/gnDefs.h"
#include <string>
#include "libGenome/gnClone.h"
#include "libGenome/gnLocation.h"
#include "libGenome/gnBaseHeader.h"
namespace genome {
/**
* gnStringHeader stores sequence related header information in memory.
* Use gnStringHeader for a general purpose headers.
* @see gnBaseHeader
*/
class GNDLLEXPORT gnStringHeader : public gnBaseHeader
{
public:
/**
* Empty constructor.
*/
gnStringHeader();
/**
* Create a gnStringHeader.
* @param name The header name.
* @param header The header.
*/
gnStringHeader(const std::string& name, const std::string& header);
/**
* Copy constructor.
* @param s The gnStringHeader to copy.
*/
gnStringHeader(const gnStringHeader& s);
/**
* Destructor, frees memory.
*/
~gnStringHeader() {};
gnStringHeader* Clone() const;
std::string GetHeader() const;
std::string GetHeaderName() const;
/**
* Set the header stored in this class.
* @param header The header as a std::string.
*/
void SetHeader(const std::string& header);
/**
* Set the header's name stored in this class.
* @param name The header name as a std::string.
*/
void SetHeaderName(const std::string& name);
uint32 GetLength() const;
private:
std::string m_name;
std::string m_header;
}; //class gnStringHeader
inline
gnStringHeader::gnStringHeader(){
m_header = std::string();
}
inline
gnStringHeader::gnStringHeader(const std::string& name, const std::string& header){
m_name = name;
m_header = header;
}
inline
gnStringHeader::gnStringHeader(const gnStringHeader& s){
m_header = std::string(s.m_header);
}
inline
gnStringHeader* gnStringHeader::Clone() const{
return new gnStringHeader(*this);
}
inline
std::string gnStringHeader::GetHeader() const{
return m_header;
}
inline
std::string gnStringHeader::GetHeaderName() const{
return m_name;
}
inline
void gnStringHeader::SetHeader(const std::string& header){
m_header = header;
}
inline
void gnStringHeader::SetHeaderName(const std::string& name){
m_name = name;
}
inline
uint32 gnStringHeader::GetLength() const{
return m_header.length();
}
} // end namespace genome
#endif
// _gnStringHeader_h_
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