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# $Id: Species.pm,v 1.3 2005/06/29 18:40:19 sshu Exp $
#
# This GO module is maintained by Chris Mungall <cjm@fruitfly.org>
#
# see also - http://www.geneontology.org
# - http://www.godatabase.org/dev
#
# You may distribute this module under the same terms as perl itself
package GO::Model::Species;
=head1 NAME
GO::Model::Species;
=head1 DESCRIPTION
represents a gene product in a particular species (this will
effectively always be refered to implicitly by the gene symbol even
though a gene may have >1 product)
=cut
use Carp;
use Exporter;
use GO::Utils qw(rearrange);
use GO::Model::Root;
use strict;
use vars qw(@ISA);
@ISA = qw(GO::Model::Root Exporter);
sub _valid_params {
return qw(id ncbi_taxa_id genus species common_name lineage_string apph);
}
sub from_bpspecies {
my $class = shift;
my $species = shift;
my $division = shift;
my $taxon = $class->new;
$taxon->common_name($species->common_name);
$taxon->genus($species->genus);
$taxon->species($species->species);
# $taxon->taxon_code($division) if $division;
$taxon;
}
sub binomial {
my $self = shift;
return ($self->genus || "")." ".($self->species || "");
}
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