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#!/usr/local/bin/perl -w
use lib '.';
BEGIN {
eval { require Test; };
use Test;
plan tests => 6;
}
# All tests must be run from the software directory;
# make sure we are getting the modules from here:
use strict;
use GO::Parser;
use GO::ObjCache;
# ----- REQUIREMENTS -----
# This test script tests the following requirements:/x
# GO::Model::Graph must implement the GO::Builder interface; ie
# it should be possible to pass in a graph to a parser and have it build
# up a graph object
# ------------------------
my $parser = new GO::Parser ({format=>'go_ont',
handler=>'obj'});
my $graph = $parser->handler->g;
ok(1);
$parser->parse ("./t/data/test-function.dat");
ok($parser->acc2name_h->{'GO:0003677'} = 'DNA binding');
# lets check we got stuff
#print $graph->dump;
my $t = $graph->get_term("GO:0003677");
ok($t);
ok(1);
$t->add_synonym_by_type(foo=>"abc");
$t->add_synonym_by_type(foo=>"def");
$t->add_synonym_by_type(goo=>"xyz");
ok(scalar(@{$t->synonym_list}),3);
$t->synonym_list([]);
ok(scalar(@{$t->synonym_list}),0);
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