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#!/usr/local/bin/perl -w
use lib '.';
BEGIN {
eval { require Test; };
use Test;
plan tests => 6;
}
# All tests must be run from the software directory;
# make sure we are getting the modules from here:
use strict;
use GO::Parser;
use GO::ObjCache;
# ----- REQUIREMENTS -----
# This test script tests the following requirements:/x
# GO::Model::Graph must implement the GO::Builder interface; ie
# it should be possible to pass in a graph to a parser and have it build
# up a graph object
# ------------------------
my $parser = new GO::Parser ({format=>'obo',
handler=>'obj'});
my $graph = $parser->handler->g;
ok(1);
$parser->parse ("./t/data/xref_encoding_test.obo");
my $terms = $graph->term_query({name=>"2,4,5-trichlorophenoxyacetic acid metabolic process"});
my $t = shift @$terms;
ok($t);
ok(1);
my @xrefs = ();
foreach my $xref (@{$t->dbxref_list}) {
print $xref->as_str,"\n";
push(@xrefs, $xref->as_str);
}
foreach my $xref (@{$t->definition_dbxref_list}) {
print $xref->as_str,"\n";
push(@xrefs, $xref->as_str);
}
ok(@xrefs==2);
ok($xrefs[0] eq $xrefs[1]);
ok($xrefs[0] eq 'UM-BBD_pathwayID:2,4,5-t');
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