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#!/usr/local/bin/perl -w
use lib '.';
use constant NUMTESTS => 3;
BEGIN {
eval { require Test; };
use Test;
plan tests => NUMTESTS;
}
# All tests must be run from the software directory;
# make sure we are getting the modules from here:
use strict;
use GO::Parser;
# ----- REQUIREMENTS -----
# The gene association file must be isomorphic to the GO model
# ------------------------
if (1) {
## Setup
my $f = './t/data/test-gene_association.fb';
my $p = GO::Parser->new({format=>'go_assoc', handler=>'obj'});
$p->parse($f);
my $g = $p->handler->graph;
my $term_l = $g->get_all_nodes;
## Get all the nodes?
ok(scalar(@{$g->get_all_nodes}), 40);
## Examine one node in detail.
my $t = $g->get_term("GO:0000003");
## Acc right?
ok($t->acc,'GO:0000003');
## Aspect right?
ok($t->get_code_from_namespace,'P');
}
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