1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
|
#!/usr/local/bin/perl -w
use lib '.';
BEGIN {
eval { require Test; };
use Test;
plan tests => 2;
}
# All tests must be run from the software directory;
# make sure we are getting the modules from here:
use strict;
use GO::Parser;
# ----- REQUIREMENTS -----
# parser and model must handle disjoint_from
# ------------------------
my $parser = new GO::Parser ({format=>'obo',
handler=>'obj'});
my $graph = $parser->handler->g;
ok(1);
$parser->parse ("./t/data/regulation_of_somitogenesis.obo");
my $terms = $graph->get_all_nodes;
my $term = $graph->get_term("GO:0032501");
my $ok;
foreach (@{$term->disjoint_from_term_list}) {
printf "%s\n", $_;
$ok = 1 if $_ eq 'GO:0009987';
}
ok($ok);
|
