1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
|
<?xml version="1.0" encoding="UTF-8"?>
<configurationDescriptor version="80">
<logicalFolder name="root" displayName="root" projectFiles="true" kind="ROOT">
<df name="goby-cpp" root=".">
<df name="autom4te.cache">
</df>
<df name="m4">
</df>
<df name="src">
<df name="goby">
<in>Alignments.cc</in>
<in>Alignments.h</in>
<in>Alignments.pb.cc</in>
<in>Alignments.pb.h</in>
<in>C_Alignments.cc</in>
<in>C_Alignments.h</in>
<in>C_CompactHelpers.h</in>
<in>C_Gsnap.cc</in>
<in>C_Gsnap.h</in>
<in>C_Gsnap_structs.h</in>
<in>C_Reads.cc</in>
<in>C_Reads.h</in>
<in>ICBFileInputStream.cc</in>
<in>ICBFileInputStream.h</in>
<in>MessageChunks.h</in>
<in>Reads.cc</in>
<in>Reads.h</in>
<in>Reads.pb.cc</in>
<in>Reads.pb.h</in>
<in>SamFlags.h</in>
<in>TooManyHits.cc</in>
<in>TooManyHits.h</in>
<in>common.cc</in>
<in>common.h</in>
<in>hash.h</in>
<in>timestamp.h</in>
</df>
<in>C_Sample_CompactReads.c</in>
<in>GobyAlignmentStats.cc</in>
<in>GobyAlignmentToText.cc</in>
<in>GobyFastaToCompact.cc</in>
<in>GobyReadsStats.cc</in>
<in>GsnapParseTest1.cc</in>
<in>TestReadCompactReads.c</in>
<in>kseq.h</in>
</df>
<df name="test-data">
</df>
<df name="vsprojects">
</df>
<df name="xcode">
</df>
<in>config.h</in>
</df>
<logicalFolder name="ExternalFiles"
displayName="Important Files"
projectFiles="false"
kind="IMPORTANT_FILES_FOLDER">
<itemPath>Makefile</itemPath>
<itemPath>configure</itemPath>
</logicalFolder>
</logicalFolder>
<sourceFolderFilter>^(nbproject)$</sourceFolderFilter>
<sourceRootList>
<Elem>.</Elem>
</sourceRootList>
<projectmakefile>Makefile</projectmakefile>
<confs>
<conf name="Default" type="0">
<toolsSet>
<remote-sources-mode>LOCAL_SOURCES</remote-sources-mode>
<compilerSet>GNU|GNU</compilerSet>
</toolsSet>
<makefileType>
<makeTool>
<buildCommandWorkingDir>.</buildCommandWorkingDir>
<buildCommand>${MAKE} -f Makefile</buildCommand>
<cleanCommand>${MAKE} -f Makefile clean</cleanCommand>
<executablePath>src/.libs/GsnapParseTest1</executablePath>
<cTool>
<incDir>
<pElem>/pbtech_mounts/fclab_store003/gobywebtest/GMAP-GSNAP-GOBY/goby-cpp/src</pElem>
<pElem>/pbtech_mounts/fclab_store003/gobywebtest/GMAP-GSNAP-GOBY/goby-cpp</pElem>
<pElem>../../local-lib/include</pElem>
</incDir>
<preprocessorList>
<Elem>HAVE_CONFIG_H</Elem>
</preprocessorList>
</cTool>
<ccTool>
<incDir>
<pElem>/pbtech_mounts/fclab_store003/gobywebtest/GMAP-GSNAP-GOBY/goby-cpp/src</pElem>
<pElem>/pbtech_mounts/fclab_store003/gobywebtest/GMAP-GSNAP-GOBY/goby-cpp</pElem>
<pElem>../../local-lib/include</pElem>
</incDir>
<preprocessorList>
<Elem>HAVE_CONFIG_H</Elem>
</preprocessorList>
</ccTool>
</makeTool>
</makefileType>
<item path="config.h" ex="true" tool="3" flavor="0">
</item>
<folder path="goby-cpp/src/goby">
<ccTool>
<preprocessorList>
<Elem>PIC</Elem>
</preprocessorList>
</ccTool>
</folder>
<item path="src/TestReadCompactReads.c" ex="true" tool="0" flavor="0">
</item>
</conf>
<conf name="GsnapParseTest1" type="0">
<toolsSet>
<remote-sources-mode>LOCAL_SOURCES</remote-sources-mode>
<compilerSet>GNU|GNU</compilerSet>
</toolsSet>
<makefileType>
<makeTool>
<buildCommandWorkingDir>.</buildCommandWorkingDir>
<buildCommand>${MAKE} -f Makefile install</buildCommand>
<cleanCommand>${MAKE} -f Makefile clean</cleanCommand>
<executablePath>src/.libs/GsnapParseTest1</executablePath>
<cTool>
<incDir>
<pElem>/pbtech_mounts/fclab_store003/gobywebtest/GMAP-GSNAP-GOBY/goby-cpp/src</pElem>
<pElem>/pbtech_mounts/fclab_store003/gobywebtest/GMAP-GSNAP-GOBY/goby-cpp</pElem>
<pElem>../../local-lib/include</pElem>
</incDir>
<preprocessorList>
<Elem>HAVE_CONFIG_H</Elem>
</preprocessorList>
</cTool>
<ccTool>
<incDir>
<pElem>/pbtech_mounts/fclab_store003/gobywebtest/GMAP-GSNAP-GOBY/goby-cpp/src</pElem>
<pElem>/pbtech_mounts/fclab_store003/gobywebtest/GMAP-GSNAP-GOBY/goby-cpp</pElem>
<pElem>../../local-lib/include</pElem>
</incDir>
<preprocessorList>
<Elem>HAVE_CONFIG_H</Elem>
</preprocessorList>
</ccTool>
</makeTool>
</makefileType>
<item path="config.h" ex="true" tool="3" flavor="0">
</item>
<folder path="goby-cpp/src/goby">
<ccTool>
<preprocessorList>
<Elem>PIC</Elem>
</preprocessorList>
</ccTool>
</folder>
<item path="src/TestReadCompactReads.c" ex="true" tool="0" flavor="0">
</item>
</conf>
</confs>
</configurationDescriptor>
|
