File: 12-seq-var-reads-gsnap.gsnap

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libgoby-java 3.3.1%2Bdfsg2-11
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>ATGAGGCAGGGCTGGACCCGGTGCCCGCGGCCGCCCTTGCCCTTCCTCCC	1	"#$%&'()*+,-./0123456789:;"#$%&'()*+,-./0123456789	12 12 mismatch at beginning x1, starting at 1, with mutation at 20
 cTGAGGCAGGGCTGGACCCaGTGCCCGCGGCCGCCCTTGCCCTTCCTCCC	2..50	+synth1:2..50	start:1..end:0,matches:48,sub:1	segs:1,align_score:2,mapq:26