File: 13-seq-var-reads-gsnap.gsnap

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libgoby-java 3.3.1%2Bdfsg2-11
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>AAGAGGCAGGGCTGGACCCGGTGCCCGCGGCCGCCCTTGCCCTTCCTCCC	1	"#$%&'()*+,-./0123456789:;"#$%&'()*+,-./0123456789	13 13 mismatch at beginning x2, starting at 1, with mutation at 20
 ctGAGGCAGGGCTGGACCCaGTGCCCGCGGCCGCCCTTGCCCTTCCTCCC	3..50	+synth1:3..50	start:2..end:0,matches:47,sub:1	segs:1,align_score:3,mapq:26