File: 14-seq-var-reads-gsnap.gsnap

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libgoby-java 3.3.1%2Bdfsg2-11
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>AAAAAGCAGGGCTGGACCCGGTGCCCGCGGCCGCCCTTGCCCTTCCTCCC	1	"#$%&'()*+,-./0123456789:;"#$%&'()*+,-./0123456789	14 14 mismatch at beginning x5, starting at 1 (pos 4 actually does match), with mutation at 20
 ctgAgGCAGGGCTGGACCCaGTGCCCGCGGCCGCCCTTGCCCTTCCTCCC	6..50	+synth1:6..50	start:5..end:0,matches:45,sub:1	segs:1,align_score:5,mapq:26