File: gsnap-output-pair-test-1.gsnap

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libgoby-java 3.3.1%2Bdfsg2-11
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>GCTTGATGTCCCTGGTGCAGAGGGAGTAAAAAAAGGAGGCTTCACTTGCTG	1 concordant	@@@DFFFFHHGGHJIFGGEHIIJJHIDFFGIIJIIJGIGBGGIIIIJIIIJ	39
 GCTTGATGTCCCTGGTGCAGAGGGAGT------------------------	1..27	+2:55379678..55379704	start:0..ins:1,matches:27,sub:0	segs:2,align_score:2,mapq:40	pair_score:2,insert_length:222
,----------------------------AAAAAAGGAGGCTTCACTTGCTG	29..51	+2:55379705..55379727	ins:1..end:0,matches:23,sub:0

<CTGAAGCAACCAATGGTTTGTCTCTTTGCTCTGTTCTCAAACTAGAGTNNG	1 concordant	@@@FFDFFHHHHFIGIEGIICHIIIIIIBHGIEIGIGGGGIIIGIIHB###	39
 CTGAAGCAACCAATGGTTTGTCTCTTTGCTCTGTTCTCAAACTAGAGTCTG	1..51	-2:55379898..55379848	start:0..end:0,matches:51,sub:0	segs:1,align_score:0,mapq:40	pair_score:2,insert_length:222