File: gsnap-paired-spliced-multi.gsnap

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libgoby-java 3.3.1%2Bdfsg2-11
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>ATCATGATAAAATTCCAGAGTGATGGCGTGAGACAGGGAACATCTCAGCATGTAGCCCGTCTGCCTGAACTCAAC	3 paired	=:@??EBEEEDDAC=EEEEECCBCEDFECCEGEDEEEFEDGGEGEGFGGFEGGGGFFGGGGGGGGGFDGGGGGGG	1254
 ATCcTGATAAAATTCct----------------------------------------------------------	1..15	-16:16360915..16360901	start:0..acceptor:1.00,matches:14,sub:1,dir:antisense,splice_type:consistent,splice_dist_2:1864,label_2:ENST00000399336.exon16/31|ENST00000263012.exon16/32	segs:2,align_score:1,mapq:2	pair_score:1,insert_length:0,pairtype:scramble
,-------------acCAGAGTGATGGCGTGAGACAGGGAACATCTCAGCATGTAGCCCGTCTGCCTGAACTCAAC	16..75	-16:16359036..16358977	donor:1.00..end:0,matches:60,sub:0,dir:antisense,splice_type:consistent,splice_dist_1:1864,label_1:ENST00000399336.exon15/31|ENST00000263012.exon15/32
 ATCcTGATAAAATTCct----------------------------------------------------------	1..15	-16:14962419..14962405	start:0..acceptor:1.00,matches:14,sub:1,dir:antisense,splice_type:consistent,splice_dist_2:1856,label_2:ENST00000456867.exon16/32|ENST00000287667.exon16/31	segs:2,align_score:1,mapq:2	pair_score:1,insert_length:0,pairtype:scramble
,-------------acCAGAGTGATGGCGTGAGACAGGGAACATCTCAGCATGTAGCCCGTCTGCCTGAACTCAAC	16..75	-16:14960548..14960489	donor:1.00..end:0,matches:60,sub:0,dir:antisense,splice_type:consistent,splice_dist_1:1856,label_1:ENST00000456867.exon15/32|ENST00000287667.exon15/31
 ATCcTGATAAAATTCct----------------------------------------------------------	1..15	+16:18538932..18538946	start:0..acceptor:1.00,matches:14,sub:1,dir:antisense,splice_type:consistent,splice_dist_2:1876,label_2:ENST00000381474.exon16/32|ENST00000330537.exon16/31	segs:2,align_score:1,mapq:2	pair_score:1,insert_length:0,pairtype:scramble
,-------------acCAGAGTGATGGCGTGAGACAGGGAACATCTCAGCATGTAGCCCGTCTGCCTGAACTCAAC	16..75	+16:18540823..18540882	donor:1.00..end:0,matches:60,sub:0,dir:antisense,splice_type:consistent,splice_dist_1:1876,label_1:ENST00000381474.exon15/32|ENST00000330537.exon15/31

<GCCTGGTGTGTACAAAGTGACCCCTCGCTCCTGCCACCGGTTTGAGCAAGCGTTCTACACCTATGACACGTCTTC	3 paired	EBEEGEGD?DEDEFECCBC<FEEGEGGGEFFFFFGCFFFFFFGGEGEFGGFDGFGGEGEGGFGGGFGGGFEEGGF	1254
 GCCTGgt--------------------------------------------------------------------	1..5	+16:16360984..16360988	start:0..donor:1.00,matches:5,sub:0,dir:sense,splice_type:consistent,splice_dist_2:2989,label_2:ENST00000399336.exon16/31|ENST00000263012.exon16/32	segs:3,align_score:0,mapq:2	pair_score:1,insert_length:0,pairtype:scramble
,---agGTGTGTACAAAGTGACCCCTCGCTCCTGCCACCGGTTTGAGCAAGCGTTCTACACCTATGACACgt----	6..69	+16:16363978..16364041	acceptor:1.00..donor:0.99,matches:64,sub:0,dir:sense,splice_type:consistent,splice_dist_1:2989,splice_dist_2:548,label_1:ENST00000399336.exon17/31|ENST00000263012.exon17/32,label_2:ENST00000399336.exon17/31|ENST00000263012.exon17/32
,-------------------------------------------------------------------agGTCTTC	70..75	+16:16364590..16364595	acceptor:1.00..end:0,matches:6,sub:0,dir:sense,splice_type:consistent,splice_dist_1:548,label_1:ENST00000399336.exon18/31|ENST00000263012.exon18/32
 GCCTGgt--------------------------------------------------------------------	1..5	+16:14962488..14962492	start:0..donor:1.00,matches:5,sub:0,dir:sense,splice_type:consistent,splice_dist_2:2985,label_2:ENST00000456867.exon16/32|ENST00000287667.exon16/31	segs:3,align_score:0,mapq:2	pair_score:1,insert_length:0,pairtype:scramble
,---agGTGTGTACAAAGTGACCCCTCGCTCCTGCCACCGGTTTGAGCAAGCGTTCTACACCTATGACACgt----	6..69	+16:14965478..14965541	acceptor:1.00..donor:0.99,matches:64,sub:0,dir:sense,splice_type:consistent,splice_dist_1:2985,splice_dist_2:549,label_1:ENST00000456867.exon17/32|ENST00000287667.exon17/31,label_2:ENST00000456867.exon17/32|ENST00000287667.exon17/31
,-------------------------------------------------------------------agGTCTTC	70..75	+16:14966091..14966096	acceptor:1.00..end:0,matches:6,sub:0,dir:sense,splice_type:consistent,splice_dist_1:549,label_1:ENST00000456867.exon18/32|ENST00000287667.exon18/31
 GCCTGgt--------------------------------------------------------------------	1..5	-16:18538863..18538859	start:0..donor:1.00,matches:5,sub:0,dir:sense,splice_type:consistent,splice_dist_2:2984,label_2:ENST00000381474.exon16/32|ENST00000330537.exon16/31	segs:3,align_score:0,mapq:2	pair_score:1,insert_length:0,pairtype:scramble
,---agGTGTGTACAAAGTGACCCCTCGCTCCTGCCACCGGTTTGAGCAAGCGTTCTACACCTATGACACgt----	6..69	-16:18535874..18535811	acceptor:1.00..donor:0.99,matches:64,sub:0,dir:sense,splice_type:consistent,splice_dist_1:2984,splice_dist_2:549,label_1:ENST00000381474.exon17/32|ENST00000330537.exon17/31,label_2:ENST00000381474.exon17/32|ENST00000330537.exon17/31
,-------------------------------------------------------------------agGTCTTC	70..75	-16:18535261..18535256	acceptor:1.00..end:0,matches:6,sub:0,dir:sense,splice_type:consistent,splice_dist_1:549,label_1:ENST00000381474.exon18/32|ENST00000330537.exon18/31