File: shortexon-forward.gsnap

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libgoby-java 3.3.1%2Bdfsg2-11
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>CAGCGTCTGAAATGGCTTCTGGTAGATCTCTTCCATTGCAAGTCTTCCATACTCTGTAAATAACTGTAGATGTTGAAGATCATCTTCTTTAATATTCTGAG	1	@@@D?BDDFFFF><FEFICA3:<A+<C+<?1C4E*?CF?@DDD*:B?:*99?B<B@DFGCCACFGGBF4;4=@F;@=7)=).)7?EA>B############	30069
 tAGCGTct---------------------------------------------------------------------------------------------	2..6	+192:80259215..80259219	start:1..acceptor:0.99,matches:5,sub:0,dir:antisense,splice_type:consistent,splice_dist_2:1223,label_2:ENSMUST00000068282.exon7/13|ENSMUST00000112437.exon6/12|ENSMUST00000073602.exon6/13	segs:3,align_score:2,mapq:40
,----acCTGAAATGGCTTCTGGTAGATCTCTTCCATTGCAAGTCTTCCATACTCTGTAAATAAct------------------------------------	7..63	+192:80260443..80260499	donor:1.00..acceptor:0.86,matches:57,sub:0,dir:antisense,splice_type:consistent,splice_dist_1:1223,splice_dist_2:269,label_1:ENSMUST00000068282.exon6/13|ENSMUST00000112437.exon5/12|ENSMUST00000073602.exon5/13,label_2:ENSMUST00000068282.exon6/13|ENSMUST00000112437.exon5/12|ENSMUST00000073602.exon5/13
,-------------------------------------------------------------acCTGTAGATGTTGAAGATCATCTTCTTgAATATTCTGAG	64..101	+192:80260769..80260806	donor:1.00..end:0,matches:37,sub:1,dir:antisense,splice_type:consistent,splice_dist_1:269,label_1:ENSMUST00000068282.exon5/13|ENSMUST00000112437.exon4/12|ENSMUST00000073602.exon4/13