File: splice-two-hits-reverse.gsnap

package info (click to toggle)
libgoby-java 3.3.1%2Bdfsg2-11
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 58,108 kB
  • sloc: java: 78,105; cpp: 5,011; xml: 3,170; python: 2,108; sh: 1,575; ansic: 277; makefile: 114
file content (4 lines) | stat: -rw-r--r-- 1,229 bytes parent folder | download | duplicates (2)
1
2
3
4
>GCCAGTGCTTCATATCAGACTGAACAACAGCATCATCAAACCTACGCCCGATCAGACGTTTGGCATCAAAAACTGTGTTGGTGGGGTTCATTGCAACCTGA	3	CCCFFFFFHHHDHIJIJEGIGIIIIJEBGIGIJJIJJJIHJGIIGJIJJFGIIJJIIJGHFGHFFFFFC@AB>CCCCCA=ABDDDD<BDDEEDDCACBDDC	30038
 GCCAGTGCTTCATATCAGACTGAACAACAGCATCATCAAACCTACGCCCGATCAGACGTTTGGCATct---------------------------------	1..66	-198:40610566..40610501	start:0..acceptor:1.00,matches:66,sub:0,dir:antisense,splice_type:consistent,splice_dist_2:290,label_2:ENSMUST00000015800.exon3/9|ENSMUST00000138895.exon2/2|ENSMUST00000117557.exon3/9|ENSMUST00000133964.exon3/3|ENSMUST00000117870.exon3/4|ENSMUST00000140984.exon3/4	segs:2,align_score:0,mapq:2
,----------------------------------------------------------------acCAAAAACTGTGTTGGTGGGGTTCATTGCAACCTGA	67..101	-198:40610210..40610176	donor:1.00..end:0,matches:35,sub:0,dir:antisense,splice_type:consistent,splice_dist_1:290,label_1:ENSMUST00000015800.exon2/9|ENSMUST00000138895.exon1/2|ENSMUST00000117557.exon2/9|ENSMUST00000133964.exon2/3|ENSMUST00000117870.exon2/4|ENSMUST00000140984.exon2/4
 GCCAGTGCTTCATATCAGACTGAACAACAGCATCATCAAACCTACGCCCGATCAGACGTTTGGCATCAAAAACTGTGTTGGTGGGGTTCATTGCAACCTGA	1..101	+202:75247783..75247883	start:0..end:0,matches:101,sub:0	segs:1,align_score:0,mapq:2