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#!/bin/sh
# autopkgtest check: This runs one specific unit test needing only the goby-io
# jar, and also in order to check the patch about Bzip2 is correct.
# (C) 2021 Pierre Gruet.
# Author: Pierre Gruet <pgt@debian.org>
set -e
pkg=libgoby-java
export LC_ALL=C.UTF-8
if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
# Double quote below to expand the temporary directory variable now versus
# later is on purpose.
# shellcheck disable=SC2064
trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
fi
# We copy the class of the test inside the temp directory.
mkdir -p "${AUTOPKGTEST_TMP}/org/campagnelab/goby/compression/"
cp goby-distribution/src/test/java/org/campagnelab/goby/compression/TestBZip2ChunkCodec.java ${AUTOPKGTEST_TMP}/org/campagnelab/goby/compression/
cd "${AUTOPKGTEST_TMP}"
# Creating the launcher.
cat <<EOF > Test.java
import org.campagnelab.goby.compression.TestBZip2ChunkCodec;
import java.io.IOException;
public class Test {
public static void main(String[] args) {
try {
TestBZip2ChunkCodec t = new TestBZip2ChunkCodec();
t.roundTrip();
} catch (IOException e) {
System.out.println(e.getMessage());
System.exit(1);
}
}
}
EOF
# Removing the junit stuff in the class of the test.
sed -i 's/^import org\.junit\.Test;$//' org/campagnelab/goby/compression/TestBZip2ChunkCodec.java
sed -i 's/^import static junit\.framework\.Assert\.assertNotNull;$//' org/campagnelab/goby/compression/TestBZip2ChunkCodec.java
sed -i 's/@Test//' org/campagnelab/goby/compression/TestBZip2ChunkCodec.java
sed -i 's/assertNotNull(decoded);/if (decoded == null) { System.exit(1); }/' org/campagnelab/goby/compression/TestBZip2ChunkCodec.java
# Building and running.
javac -cp .:/usr/share/java/goby-io.jar:/usr/share/java/protobuf.jar Test.java org/campagnelab/goby/compression/TestBZip2ChunkCodec.java
java -cp .:/usr/share/java/goby-io.jar:/usr/share/java/protobuf.jar Test
if [ $? -eq 0 ]; then
echo "Test ran successfully"
else
echo "Test failed to run"
exit 1
fi
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