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import os
import sys
try:
import ez_setup, Extension
ez_setup.use_setuptools()
except ImportError:
pass
from distutils.core import setup, Extension
import subprocess
setup(
name='goby',
version='3.3.0',
packages=['goby'],
author='Campagne Lab',
author_email='fac2003@campagnelab.org',
scripts=[
'GobyAlignmentStats.py',
'GobyAlignmentToText.py',
'GobyCompactToFasta.py',
'GobyReadsStats.py',
'SbiPrint.py'
''
],
url='http://goby.campagnelab.org/',
description='Python API for reading read and alignment data files created with the Goby framework.',
license='GNU LESSER GENERAL PUBLIC LICENSE',
long_description=open('README.txt').read(),
# Remove below comments and adjust include path to enable (much) faster protobuf with cpp implementation:
# when installed this way, do: export PROTOCOL_BUFFERS_PYTHON_IMPLEMENTATION=cpp to enable
#ext_modules=[Extension('gobypodpb',
# sources=['cpp/gobypodpb.c','cpp/Alignments.pb.cc',
# 'cpp/Reads.pb.cc',
# 'cpp/BaseInformationRecords.pb.cc' ],
# include_dirs=['/usr/local/include'], # adjust if protobuf installed elsewhere
# library_dirs=['/usr/local/lib'], # adjust if protobuf installed elsewhere
# libraries=['protobuf'])],
requires=[
'google.protobuf (>=3.3)',
],
classifiers=[
'Development Status :: 4 - Beta',
'Intended Audience :: Developers',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: GNU LESSER GENERAL PUBLIC LICENSE',
'Operating System :: OS Independent',
'Topic :: Scientific/Engineering :: Bio-Informatics'
],
)
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