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#
# Environment variables used for SGE alignment jobs
#
#
# Email address to notify upon job completion
#
SGE_STATUS_MAILTO=
#
# Email address to notify upon job completion
#
SGE_STATUS_MAILTO=fac2003@gmail.com
#
# Memory size for SGE
#
SGE_MEMORY=5g
#
# JVM flags (memory should match SGE_MEMORY)
#
SGE_JVM_FLAGS=-Xmx16g
# The following properties depend on the job:
remote_path=/data/helicos-ILM-SOLID
remote_host=mac133621
alignment_basenames="\
DLTTEJH-Bullard-HBR-SRR037439.entries \
HHNVSNR-Bullard-HBR-SRR037440.entries \
RRTFBOP-Bullard-HBR-SRR037443.entries \
ZOBXCNB-Bullard-HBR-SRR037441.entries \
DOWTGPI-Bullard-HBR-SRR037444.entries \
WKQCRQC-Bullard-HBR-SRR037442.entries \
LHFEDQE-solid-HBR.entries"
group1=HBR-Bullard-ILM
group2=HBR-SOLID
group1_basenames=DLTTEJH-Bullard-HBR-SRR037439.entries,DOWTGPI-Bullard-HBR-SRR037444.entries,HHNVSNR-Bullard-HBR-SRR037440.entries,RRTFBOP-Bullard-HBR-SRR037443.entries,WKQCRQC-Bullard-HBR-SRR037442.entries,ZOBXCNB-Bullard-HBR-SRR037441.entries
group2_basenames=LHFEDQE-solid-HBR
annotation_file=exon-annotations-NCBI36.54.tsv
use_weights=gc
adjust_gc_bias_boolean=true
|
