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##fileformat=VCFv4.1
##Goby=development (20110405085955)
##INFO=<ID=BIOMART_COORDS,Number=1,Type=String,Description="Coordinates for use with Biomart.">
##INFO=<ID=LOD[CAN_IFTA/normal],Number=1,Type=Float,Description="Log2 of the odds-ratio between group CAN_IFTA and group normal">
##INFO=<ID=LOD_SE[CAN_IFTA/normal],Number=1,Type=Float,Description="Standard Error of the log2 of the odds-ratio between group CAN_IFTA and group normal">
##INFO=<ID=LOD_Z[CAN_IFTA/normal],Number=1,Type=Float,Description="Z value of the odds-ratio between group CAN_IFTA and group normal">
##INFO=<ID=FisherP[CAN_IFTA/normal],Number=1,Type=Float,Description="Fisher exact P-value of observing as large a difference by chance between group CAN_IFTA and group normal.">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total depth of sequencing across groups at this site">
##INFO=<ID=GENE,Number=1,Type=String,Description="Ensembl Gene ID">
##INFO=<ID=RS,Number=1,Type=String,Description="rs ID">
##INFO=<ID=Effect,Number=1,Type=String,Description="Effect of variation on transcript">
##INFO=<ID=fisherp[can_ifta/normal]-BH-FDR-q-value,Number=1,Type=Float,Description="Benjamini Hochberg FDR adjusted for column fisherp[can_ifta/normal]-BH-FDR-q-value.">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT AMTPPFO-transplant-non-redundants7-ACR-18-21-22-unique BEVYRAK-transplant-non-redundants3-ACR-2-3-CAN-23-unique DNLKCSR-transplant-non-redundants2-ACR-2-3-CAN-23-unique GJKBQRW-transplant-non-redundants8-CAN25-unique OGHGEFR-transplant-non-redundants6-ACR20-unique QRNUJKK-transplant-non-redundants3-N9-unique RJLDZCC-transplant-non-redundants6-ACR-18-21-22-unique SBSIXRM-transplant-non-redundants5-Normal-7-8-12-unique SUJPEWD-transplant-non-redundants7-CAN24-unique SVZUNMN-transplant-non-redundants4-N13-unique ZQGHNXP-transplant-non-redundants8-ACR-18-21-22-unique
1 564608 C A,G,T,N BIOMART_COORDS=1:564608:564608;LOD[CAN_IFTA/normal]=1.601059882203808;LOD_SE[CAN_IFTA/normal]=NaN;LOD_Z[CAN_IFTA/normal]=NaN;FisherP[CAN_IFTA/normal]=3.235395204576302E-4;DP=3673;GENE=ENSG00000248149;fisherp[can_ifta/normal]-BH-FDR-q-value=0.12258185480204539 GT 0/0 0/0 0/0 1/0/2 0/0 0/0 0/0 1/3/0/2/4 0/0
1 564654 G A,T,N,C BIOMART_COORDS=1:564654:564654;LOD[CAN_IFTA/normal]=-3.7575634169721805;LOD_SE[CAN_IFTA/normal]=0.30062491936093094;LOD_Z[CAN_IFTA/normal]=-12.499174802142205;FisherP[CAN_IFTA/normal]=2.711001253695303E-23;DP=13572;GENE=ENSG00000248149;fisherp[can_ifta/normal]-BH-FDR-q-value=2.4207762467542494E-19 GT 2/0 1/0 1/0 0/0 0/0 1/0 1/0/3 2/4/0 0/0
1 564676 C A,T,G BIOMART_COORDS=1:564676:564676;LOD[CAN_IFTA/normal]=-1.1073770076982112;LOD_SE[CAN_IFTA/normal]=0.2005409419886924;LOD_Z[CAN_IFTA/normal]=-5.521949766051518;FisherP[CAN_IFTA/normal]=2.1700143282066644E-4;DP=9503;GENE=ENSG00000248149;fisherp[can_ifta/normal]-BH-FDR-q-value=0.09237160882937005 GT 0/0 0/0 0/0 0/0 1/0 0/0 0/0 2/0/3 0/0
1 564713 T G,C BIOMART_COORDS=1:564713:564713;LOD[CAN_IFTA/normal]=2.3349406321118416;LOD_SE[CAN_IFTA/normal]=NaN;LOD_Z[CAN_IFTA/normal]=NaN;FisherP[CAN_IFTA/normal]=2.783044166913211E-5;DP=346;GENE=ENSG00000248149;fisherp[can_ifta/normal]-BH-FDR-q-value=0.01878774778356586 GT 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/2 0/0
1 565354 A BIOMART_COORDS=1:565354:565354;LOD[CAN_IFTA/normal]=0.8994106553840803;LOD_SE[CAN_IFTA/normal]=0.10673786669595521;LOD_Z[CAN_IFTA/normal]=8.426350303084735;FisherP[CAN_IFTA/normal]=4.2823888902888795E-9;DP=3657;GENE=ENSG00000248149;fisherp[can_ifta/normal]-BH-FDR-q-value=7.936478610561036E-6 GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0
1 565370 G A BIOMART_COORDS=1:565370:565370;LOD[CAN_IFTA/normal]=2.0537976519562484;LOD_SE[CAN_IFTA/normal]=0.19576971286313002;LOD_Z[CAN_IFTA/normal]=10.490885550780451;FisherP[CAN_IFTA/normal]=1.3016612733289926E-14;DP=1640;GENE=ENSG00000248149;fisherp[can_ifta/normal]-BH-FDR-q-value=5.16233759219672E-11 GT 0/0 0/0 0/0 0/0 0/0 1/0 0/0 0/0 0/0
1 565374 A BIOMART_COORDS=1:565374:565374;LOD[CAN_IFTA/normal]=1.2847808423397986;LOD_SE[CAN_IFTA/normal]=0.2370255921623713;LOD_Z[CAN_IFTA/normal]=5.42043089363817;FisherP[CAN_IFTA/normal]=1.7266352369606038E-4;DP=1275;GENE=ENSG00000248149;fisherp[can_ifta/normal]-BH-FDR-q-value=0.078328121229717 GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0
1 566572 A C,G BIOMART_COORDS=1:566572:566572;LOD[CAN_IFTA/normal]=2.053293701271695;LOD_SE[CAN_IFTA/normal]=0.31817463495012427;LOD_Z[CAN_IFTA/normal]=6.453354465523503;FisherP[CAN_IFTA/normal]=3.312954135796164E-5;DP=686;GENE=ENSG00000248149;fisherp[can_ifta/normal]-BH-FDR-q-value=0.021913239530938884 GT 0/0 0/0 0/1/2 0/0 0/2 0/1/2 0/1/2 0/1 0/2
1 566732 G N,A,C BIOMART_COORDS=1:566732:566732;LOD[CAN_IFTA/normal]=3.938933611850434;LOD_SE[CAN_IFTA/normal]=NaN;LOD_Z[CAN_IFTA/normal]=NaN;FisherP[CAN_IFTA/normal]=2.0269848493093774E-10;DP=1017;GENE=ENSG00000248149;fisherp[can_ifta/normal]-BH-FDR-q-value=4.6034349095621805E-7 GT 0/1 0/0 2/0 0/0 0/0 2/0 0/0 0/0 3/0
1 566768 A BIOMART_COORDS=1:566768:566768;LOD[CAN_IFTA/normal]=1.535435546026121;LOD_SE[CAN_IFTA/normal]=0.2709295196074299;LOD_Z[CAN_IFTA/normal]=5.667287744247762;FisherP[CAN_IFTA/normal]=8.542065992565896E-5;DP=1018;GENE=ENSG00000248149;fisherp[can_ifta/normal]-BH-FDR-q-value=0.046017521319862226 GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0
1 566771 C A,T,G BIOMART_COORDS=1:566771:566771;LOD[CAN_IFTA/normal]=-Infinity;LOD_SE[CAN_IFTA/normal]=NaN;LOD_Z[CAN_IFTA/normal]=NaN;FisherP[CAN_IFTA/normal]=1.7284594678022847E-4;DP=1077;GENE=ENSG00000248149;fisherp[can_ifta/normal]-BH-FDR-q-value=0.078328121229717 GT 0/0 0/0 0/0 0/0 1/0 0/0 0/3 0/0 1/0
1 567696 C A,G,T BIOMART_COORDS=1:567696:567696;LOD[CAN_IFTA/normal]=1.8316162911281724;LOD_SE[CAN_IFTA/normal]=0.3111024510065785;LOD_Z[CAN_IFTA/normal]=5.887501963426965;FisherP[CAN_IFTA/normal]=2.8226573080614083E-4;DP=3767;GENE=ENSG00000248149;fisherp[can_ifta/normal]-BH-FDR-q-value=0.11179544009154184 GT 0/0 1/0 0/2 0/2 1/3/0 0/0 0/0 1/0 1/0
1 567726 T C BIOMART_COORDS=1:567726:567726;LOD[CAN_IFTA/normal]=3.05373198393779;LOD_SE[CAN_IFTA/normal]=0.3264420624289827;LOD_Z[CAN_IFTA/normal]=9.354591014453376;FisherP[CAN_IFTA/normal]=1.3342337069973036E-8;DP=1999;GENE=ENSG00000248149;fisherp[can_ifta/normal]-BH-FDR-q-value=2.2025843972454308E-5 GT 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1
1 567783 T A,C,G BIOMART_COORDS=1:567783:567783;LOD[CAN_IFTA/normal]=1.138499602181418;LOD_SE[CAN_IFTA/normal]=0.22008183557962857;LOD_Z[CAN_IFTA/normal]=5.173073912178879;FisherP[CAN_IFTA/normal]=3.980372329263764E-4;DP=334;GENE=ENSG00000248149;fisherp[can_ifta/normal]-BH-FDR-q-value=0.14000647866413748 GT 1/0/2 0/0 0/0 0/3 0/0 0/0 0/0 1/0/2/3 1/0
1 567784 C G,A,T,N BIOMART_COORDS=1:567784:567784;LOD[CAN_IFTA/normal]=3.135332061617772;LOD_SE[CAN_IFTA/normal]=NaN;LOD_Z[CAN_IFTA/normal]=NaN;FisherP[CAN_IFTA/normal]=4.914944163267286E-7;DP=497;GENE=ENSG00000248149;fisherp[can_ifta/normal]-BH-FDR-q-value=5.549028453939838E-4 GT 0/0 0/0 0/0 2/3/0 0/0 0/0 0/0 2/0/1/4 0/0
1 567789 T C,A,G BIOMART_COORDS=1:567789:567789;LOD[CAN_IFTA/normal]=2.0828789032619035;LOD_SE[CAN_IFTA/normal]=0.3399852991195513;LOD_Z[CAN_IFTA/normal]=6.126379313034612;FisherP[CAN_IFTA/normal]=2.769753850608966E-6;DP=1191;GENE=ENSG00000248149;fisherp[can_ifta/normal]-BH-FDR-q-value=0.0025848579783583382 GT 0/0 0/0 0/0 0/1 0/0 0/0 0/0 2/0/1/3 0/0
1 567792 A T,C,G BIOMART_COORDS=1:567792:567792;LOD[CAN_IFTA/normal]=2.229734396677616;LOD_SE[CAN_IFTA/normal]=NaN;LOD_Z[CAN_IFTA/normal]=NaN;FisherP[CAN_IFTA/normal]=6.256855110278134E-6;DP=1311;GENE=ENSG00000248149;fisherp[can_ifta/normal]-BH-FDR-q-value=0.00526401144626946 GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1/2/3 0/0
1 567793 T A,C,G,N BIOMART_COORDS=1:567793:567793;LOD[CAN_IFTA/normal]=1.9240928040262406;LOD_SE[CAN_IFTA/normal]=0.3114487251582964;LOD_Z[CAN_IFTA/normal]=6.177879851806439;FisherP[CAN_IFTA/normal]=2.344188589023606E-6;DP=1325;GENE=ENSG00000248149;fisherp[can_ifta/normal]-BH-FDR-q-value=0.002235491067652958 GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/0/2/3/4 0/2
1 567794 A C,G,T,N BIOMART_COORDS=1:567794:567794;LOD[CAN_IFTA/normal]=3.2559632547964803;LOD_SE[CAN_IFTA/normal]=NaN;LOD_Z[CAN_IFTA/normal]=NaN;FisherP[CAN_IFTA/normal]=7.732840766219658E-12;DP=1342;GENE=ENSG00000248149;fisherp[can_ifta/normal]-BH-FDR-q-value=2.2015958012207528E-8 GT 0/0 0/0 0/0 0/1/2 0/0 0/0 0/0 0/3/1/2/4 0/0
1 569351 T A,C,G BIOMART_COORDS=1:569351:569351;LOD[CAN_IFTA/normal]=0.5197356253008351;LOD_SE[CAN_IFTA/normal]=0.10104882145315124;LOD_Z[CAN_IFTA/normal]=5.143411054445573;FisherP[CAN_IFTA/normal]=4.489656302127793E-4;DP=5082;GENE=ENSG00000248149;fisherp[can_ifta/normal]-BH-FDR-q-value=0.15081060842114158 GT 0/0 1/0/2/3 1/0/2/3 1/0/2/3 0/0 0/0 1/0/2/3 1/0/2/3 0/0
1 569352 A C,G BIOMART_COORDS=1:569352:569352;LOD[CAN_IFTA/normal]=0.32796218030161034;LOD_SE[CAN_IFTA/normal]=0.06328363605488453;LOD_Z[CAN_IFTA/normal]=5.182416826005001;FisherP[CAN_IFTA/normal]=3.5699267644648914E-4;DP=6655;GENE=ENSG00000248149;fisherp[can_ifta/normal]-BH-FDR-q-value=0.1304753438187161 GT 0/0 0/1/2 0/1/2 0/1 0/0 0/0 0/1/2 0/1/2 0/0
1 569354 A C,G BIOMART_COORDS=1:569354:569354;LOD[CAN_IFTA/normal]=0.23421536161398926;LOD_SE[CAN_IFTA/normal]=0.04659843459904991;LOD_Z[CAN_IFTA/normal]=5.026249564588692;FisherP[CAN_IFTA/normal]=5.474388575228677E-4;DP=10057;GENE=ENSG00000248149;fisherp[can_ifta/normal]-BH-FDR-q-value=0.17058311925793665 GT 0/0 0/1/2 0/1/2 0/1 0/0 0/1 0/1/2 0/1/2 0/0
1 569355 C A,G BIOMART_COORDS=1:569355:569355;LOD[CAN_IFTA/normal]=0.2904132077079463;LOD_SE[CAN_IFTA/normal]=0.05815707514985642;LOD_Z[CAN_IFTA/normal]=4.993600640328339;FisherP[CAN_IFTA/normal]=5.637089560439398E-4;DP=12813;GENE=ENSG00000248149;fisherp[can_ifta/normal]-BH-FDR-q-value=0.17357287930551704 GT 0/0 1/0/2 1/0/2 1/0 0/0 0/0 1/0/2 1/0/2 0/0
1 569370 T C BIOMART_COORDS=1:569370:569370;LOD[CAN_IFTA/normal]=0.3961499526036599;LOD_SE[CAN_IFTA/normal]=0.0704435050779937;LOD_Z[CAN_IFTA/normal]=5.62365475944234;FisherP[CAN_IFTA/normal]=1.0702422398453887E-4;DP=26054;GENE=ENSG00000248149;fisherp[can_ifta/normal]-BH-FDR-q-value=0.05377159783456443 GT 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0
1 569372 T A BIOMART_COORDS=1:569372:569372;LOD[CAN_IFTA/normal]=0.664703372698176;LOD_SE[CAN_IFTA/normal]=0.07582925104141768;LOD_Z[CAN_IFTA/normal]=8.765791084170374;FisherP[CAN_IFTA/normal]=1.4286897831028329E-9;DP=27431;GENE=ENSG00000248149;fisherp[can_ifta/normal]-BH-FDR-q-value=2.8785974411383105E-6 GT 0/0 0/0 1/0 0/0 0/0 0/0 0/0 1/0 0/0
1 569374 T A BIOMART_COORDS=1:569374:569374;LOD[CAN_IFTA/normal]=0.3921337602358641;LOD_SE[CAN_IFTA/normal]=0.06808161421613558;LOD_Z[CAN_IFTA/normal]=5.759760028470756;FisherP[CAN_IFTA/normal]=7.729227268011855E-5;DP=28057;GENE=ENSG00000248149;fisherp[can_ifta/normal]-BH-FDR-q-value=0.04289240786289245 GT 0/0 1/0 1/0 0/0 0/0 0/0 0/0 1/0 0/0
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