File: issue-nov20-2012_c.vcf

package info (click to toggle)
libgoby-java 3.3.1%2Bdfsg2-11
  • links: PTS, VCS
  • area: main
  • in suites: trixie
  • size: 58,108 kB
  • sloc: java: 78,105; cpp: 5,011; xml: 3,170; python: 2,108; sh: 1,575; ansic: 277; makefile: 114
file content (13 lines) | stat: -rw-r--r-- 916 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
##fileformat=VCFv4.1
##INFO=<ID=AA,Number=1,Type=String,Description="Ancestral Allele, ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/pilot_data/technical/reference/ancestral_alignments/README">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
##INFO=<ID=HM2,Number=0,Type=Flag,Description="HapMap2 membership">
##INFO=<ID=HM3,Number=0,Type=Flag,Description="HapMap3 membership">
##reference=human_b36_both.fasta
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=GX,Number=1,Type=Integer,Description="Something else">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00096	HG00097	HG00099
1	695744	.	C	T	.	PASS	AA=.;DP=115	GT:GQ:DP	0|1:100:20	0|0:16:13	0|0:100:82
1	713682	rs11804171	T	A	.	PASS	AA=.;DP=137;HM2	GT:GX:DP	0|1:33:30	0|1:54:14	0|0:100:43