File: inclusions_in_SplitTranscriptsMode.patch

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Description: reading class GeneTranscriptRelationships from Goby archive
 The above-named class is in the archive of Goby and thus does not need to be read elsewhere.
Author: Pierre Gruet <pgt@debian.org>
Forwarded: https://github.com/CampagneLaboratory/goby3/issues/8
Last-Update: 2020-11-02

--- a/goby-distribution/src/main/java/org/campagnelab/goby/modes/SplitTranscriptsMode.java
+++ b/goby-distribution/src/main/java/org/campagnelab/goby/modes/SplitTranscriptsMode.java
@@ -24,7 +24,7 @@
 import org.campagnelab.goby.readers.FastXEntry;
 import org.campagnelab.goby.readers.FastXReader;
 import edu.cornell.med.icb.identifier.IndexedIdentifier;
-import edu.cornell.med.icb.tissueinfo.similarity.GeneTranscriptRelationships;
+import org.campagnelab.goby.alignments.filters.GeneTranscriptRelationships;
 import it.unimi.dsi.fastutil.ints.Int2IntMap;
 import it.unimi.dsi.fastutil.ints.Int2IntOpenHashMap;
 import it.unimi.dsi.fastutil.ints.Int2ObjectMap;