File: align-concat.sh

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libgoby-java 3.3.1%2Bdfsg2-12
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#!/bin/sh

#
# Script to submit a PBS job that will run an alignment and
# concatenate the results using goby
#

# Run the aligner
ALIGN=`qsub goby-align.qsub`
echo $ALIGN

# Concatenate results from the alignment results
CONCAT=`qsub -W depend=afterany:$ALIGN goby-concat.qsub`
echo $CONCAT