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CHROM POS ID REF ALT QUAL FILTER INFO FORMAT results/IPBKRNW/IPBKRNW-replicate.bam results/IPBKRNW/IPBKRNW-sorted.bam
0 145497099 . A G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
1 29389393 . AC A 31.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,2;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
1 44379612 . CT C 31.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,2;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
1 113304121 . C A 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
1 239926953 . C CGA 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
2 186893495 . C T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
5 21610299 . C CGA 6.57 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=23;FQ=-38.3;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
6 48943221 . T TC 228 . INDEL;DP=14;AF1=1;CI95=1,1;DP4=0,0,14,0;MQ=37;FQ=-57.3;QCHI2=0;PCHI2=0.992;PC2=3,3 GT:PL:GQ 1/1:136,21,0:87 1/1:136,21,0:87
8 36216797 . T C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 94234 . TAA TAAA 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 114158 . A G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 123469 . A G 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=20;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 181146 . A G 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 181486 . G A 15.5 . DP=4;AF1=0.5024;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.07;QCHI2=0;PCHI2=0.984;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,19:21 0/1:25,0,19:21
9 181567 . C G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 182055 . A C 5.04 . DP=4;AF1=0.4976;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.07;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:19,0,25:21 0/1:19,0,25:21
9 182057 . C A 6.51 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=6.51;QCHI2=0;PCHI2=0.978;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:20,0,20:20 0/1:20,0,20:20
9 182271 . C A 3.79 . DP=6;AF1=0.496;CI95=0.25,0.5;DP4=4,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,4.5e-05,1,0.31 GT:PL:GQ 0/1:18,0,59:21 0/1:18,0,59:21
9 182801 . G C 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 183183 . T G 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 185358 . C T 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 186159 . T C 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.0027,1,1 GT:PL:GQ 0/1:22,0,100:25 0/1:22,0,100:25
9 188262 . A T 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 188345 . T C 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=33;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.00056,1,1 GT:PL:GQ 0/1:22,0,49:25 0/1:22,0,49:25
9 189046 . G T 17.4 . DP=6;AF1=0.4994;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=20.3;QCHI2=0;PCHI2=0.994;PC2=3,3;PV4=1,0.00031,1,1 GT:PL:GQ 0/1:26,0,59:29 0/1:26,0,59:29
9 190894 . TTCAT TT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 192926 . T TC 13.9 . INDEL;DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,2,0;MQ=30;FQ=15.4;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1,1,0.38 GT:PL:GQ 0/1:28,0,30:29 0/1:28,0,30:29
9 193132 . G T 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 193133 . C T 23.3 . DP=4;AF1=0.5005;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=17.7;QCHI2=0;PCHI2=0.995;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:29,0,25:27 0/1:29,0,25:27
9 195030 . T G 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.072,1,1 GT:PL:GQ 0/1:22,0,99:25 0/1:22,0,99:25
9 196455 . TA T 17.9 . INDEL;DP=4;AF1=0.5048;CI95=0.5,0.5;DP4=2,0,2,0;MQ=31;FQ=-6.29;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:30,0,17:20 0/1:30,0,17:20
9 200382 . T C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 201578 . G A 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 202028 . G T 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 202118 . A C 35 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 205301 . C T 109 . DP=8;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:72,9,0:57 1/1:72,9,0:57
9 208081 . C A 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 208367 . T C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 208400 . G C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 210085 . T C 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 211496 . A G 27.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=27.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 216504 . G T 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 217460 . C A 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 229243 . G GA 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 235958 . G C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 235969 . G T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 235973 . G T 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 243390 . C G 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 249707 . C CA 25.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 257429 . CAAA CAA 25.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 261519 . A T 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=23;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 261738 . T G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 261741 . T G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 262539 . G T 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 266041 . A C 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 266045 . A C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 267445 . TGG TG 13.9 . INDEL;DP=4;AF1=0.5004;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=10.2;QCHI2=0;PCHI2=0.994;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:28,0,25:26 0/1:28,0,25:26
9 267966 . TGG TG 27.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 268342 . A C 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 268703 . A G 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 273092 . G T 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 273113 . G T 35 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 276290 . G C 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=17;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 277054 . C A 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 278222 . A T 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 278224 . C G 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 278823 . A G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 279162 . TAAAA TAAAAA 48 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-41.8;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:45,6,0:51 1/1:45,6,0:51
9 279421 . C A 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 280642 . T G 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 280966 . CTT CT 13.9 . INDEL;DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=15.9;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:28,0,31:29 0/1:28,0,31:29
9 281204 . G A 45.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:40,6,0:51 1/1:40,6,0:51
9 281211 . A C 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 284861 . C G 35.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:35,6,0:51 1/1:35,6,0:51
9 285273 . C G 15.4 . DP=8;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,4.9e-10,1,0.16 GT:PL:GQ 0/1:25,0,81:28 0/1:25,0,81:28
9 285479 . GT GTGTT 92 . INDEL;DP=8;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-41.8;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:67,6,0:51 1/1:67,6,0:51
9 285860 . C CA 13.9 . INDEL;DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.8;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1,1,0.16 GT:PL:GQ 0/1:28,0,57:31 0/1:28,0,57:31
9 287666 . G A 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 288507 . G A 106 . DP=8;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=37;FQ=-40.6;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:71,12,0:63 1/1:71,12,0:63
9 290649 . G A 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 290783 . AGG AG 27.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 291311 . G T 3.79 . DP=6;AF1=0.496;CI95=0.25,0.5;DP4=4,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0.02,1,1 GT:PL:GQ 0/1:18,0,53:21 0/1:18,0,53:21
9 291313 . G T 3.79 . DP=6;AF1=0.496;CI95=0.25,0.5;DP4=4,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0.00053,1,0.16 GT:PL:GQ 0/1:18,0,59:21 0/1:18,0,59:21
9 291533 . A G 39.2 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=4,0,4,0;MQ=37;FQ=42.2;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,5.6e-08,1,1 GT:PL:GQ 0/1:37,0,56:40 0/1:37,0,56:40
9 291893 . T G 81.2 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=16,0,12,0;MQ=36;FQ=84.2;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,1e-10,0.048,0.49 GT:PL:GQ 0/1:58,0,138:61 0/1:58,0,138:61
9 293234 . T G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 293602 . A C 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 294275 . GGAA GGAAGAA 69.7 . INDEL;DP=38;AF1=0.5;CI95=0.5,0.5;DP4=4,0,4,0;MQ=37;FQ=69.7;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,1,1,0.048 GT:PL:GQ 0/1:56,0,56:56 0/1:56,0,56:56
9 294953 . A G 19.1 . DP=146;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 297074 . C A 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 297386 . T C 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 297391 . G C 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 297921 . T C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 298216 . GTTT GTT 12 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12;QCHI2=0;PCHI2=0.994;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:27,0,27:27 0/1:27,0,27:27
9 301898 . G C 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 303530 . C A 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 303535 . T G 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 303546 . C G 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 307381 . TAAAAAAAAAAAA TAAAAAAAAA 9.94 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 318171 . A G 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=18;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 323006 . GTTTT GTTTTT 81.2 . INDEL;DP=6;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-45;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:62,9,0:57 1/1:62,9,0:57
9 323283 . A G 169 . DP=82;AF1=0.5;CI95=0.5,0.5;DP4=36,0,40,0;MQ=37;FQ=172;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,2.6e-42,1,0.34 GT:PL:GQ 0/1:102,0,159:99 0/1:102,0,159:99
9 323914 . T G 5.03 . DP=6;AF1=0.4968;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.0022,1,1 GT:PL:GQ 0/1:19,0,59:22 0/1:19,0,59:22
9 324458 . G T 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 325045 . A C 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 325346 . A C 8.08 . DP=4;AF1=0.4982;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:21,0,31:24 0/1:21,0,31:24
9 325800 . A C 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=34;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,1.9e-05,1,0.0057 GT:PL:GQ 0/1:19,0,73:22 0/1:19,0,73:22
9 325802 . A C 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=34;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,3.7e-06,1,0.0013 GT:PL:GQ 0/1:19,0,73:22 0/1:19,0,73:22
9 326665 . A G 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=33;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.022,1,0.26 GT:PL:GQ 0/1:28,0,49:31 0/1:28,0,49:31
9 327101 . G T 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 327689 . G T 3.79 . DP=6;AF1=0.496;CI95=0.25,0.5;DP4=4,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0.0036,1,1 GT:PL:GQ 0/1:18,0,59:21 0/1:18,0,59:21
9 328859 . G T 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 329388 . T TC 23.7 . INDEL;DP=6;AF1=0.5004;CI95=0.5,0.5;DP4=2,0,4,0;MQ=28;FQ=14.6;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,1,0,0 GT:PL:GQ 0/1:33,0,27:29 0/1:33,0,27:29
9 332741 . A C 27.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=27.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 332793 . G A 174 . DP=12;AF1=1;CI95=1,1;DP4=0,0,12,0;MQ=37;FQ=-46.7;QCHI2=0;PCHI2=0.984;PC2=3,3 GT:PL:GQ 1/1:105,18,0:75 1/1:105,18,0:75
9 334007 . C T 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 334010 . C A 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 334063 . C T 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 334457 . G T 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 334693 . C A 37 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:35,3,0:42 1/1:35,3,0:42
9 335604 . G T 4.11 . DP=4;AF1=0.5296;CI95=0.5,0.75;DP4=2,0,2,0;MQ=32;FQ=-13;QCHI2=0;PCHI2=0.932;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:18,0,9:11 0/1:18,0,9:11
9 335803 . G GA 19.8 . INDEL;DP=4;AF1=0.5006;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=10.8;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,25:27 0/1:31,0,25:27
9 336066 . G C 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 336722 . G T 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 336739 . G C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 337584 . A C 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 338024 . T G 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 338038 . G T 19.3 . DP=6;AF1=0.4995;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=22.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,3.7e-06,1,0.063 GT:PL:GQ 0/1:27,0,59:30 0/1:27,0,59:30
9 338313 . G C 70.7 . DP=6;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:53,9,0:57 1/1:53,9,0:57
9 339127 . G T 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 339130 . G T 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 340805 . T C 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 350966 . CATATAT CATAT 33.5 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 352899 . T G 25.3 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=26.1;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:30,0,31:30 0/1:30,0,31:30
9 353078 . T G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 353090 . A C 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 355679 . C T 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 355970 . C CT 105 . INDEL;DP=12;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=30;FQ=-45;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:74,9,0:57 1/1:74,9,0:57
9 357798 . C G 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 358662 . G T 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 360418 . A C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 361714 . T G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 361722 . C A 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 363555 . A G 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 364065 . A G 25.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:30,6,0:51 1/1:30,6,0:51
9 366901 . C A 29 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 367252 . C T 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 369777 . TCC TC 8.41 . INDEL;DP=6;AF1=0.4992;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=11.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,0.16 GT:PL:GQ 0/1:25,0,59:28 0/1:25,0,59:28
9 370284 . G T 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 370297 . G T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 374965 . G GA 25.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 379496 . T C 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 379520 . A G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 381448 . T G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 383240 . G A 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 384873 . T G 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 384896 . T G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 386951 . A T 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 387493 . G T 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=23;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 391303 . AC ACC 70 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=32;FQ=-41.8;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:56,6,0:51 1/1:56,6,0:51
9 395584 . C A 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 397454 . T C 5.04 . DP=4;AF1=0.4971;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.24;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:19,0,30:22 0/1:19,0,30:22
9 400765 . C G 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 401179 . G C 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 403445 . C A 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 403452 . C A 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 405116 . C A 39 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 407282 . G GA 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 407719 . A C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 407737 . A C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 407748 . T C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 409069 . ATCT ATCTCT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 413756 . G T 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 413766 . A G 37 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:35,3,0:42 1/1:35,3,0:42
9 416483 . G T 31 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:32,3,0:42 1/1:32,3,0:42
9 416485 . G T 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 418911 . G T 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 421144 . A G 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 421442 . G C 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 424396 . CAAA CAAAA 49.7 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=6,0,4,0;MQ=37;FQ=52.7;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,1,1,0.11 GT:PL:GQ 0/1:46,0,64:49 0/1:46,0,64:49
9 424409 . A G 6.47 . DP=6;AF1=0.4975;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=8.93;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:20,0,59:23 0/1:20,0,59:23
9 425265 . T G 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,4.7e-05,1,1 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 425308 . A C 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=32;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 425317 . A C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 425958 . T G 4.58 . DP=4;AF1=0.9968;CI95=0.5,1;DP4=2,0,2,0;MQ=26;FQ=-28.2;QCHI2=1;PCHI2=0.812;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 1/1:17,1,0:23 1/1:17,1,0:23
9 425962 . C A 7.53 . DP=4;AF1=0.9969;CI95=0.5,1;DP4=2,0,2,0;MQ=26;FQ=-28.2;QCHI2=1;PCHI2=0.767;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 1/1:19,1,0:23 1/1:19,1,0:23
9 426223 . A G 14.8 . DP=4;AF1=0.9969;CI95=0.5,1;DP4=2,0,2,0;MQ=26;FQ=-28.3;QCHI2=1;PCHI2=0.731;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 1/1:23,1,0:23 1/1:23,1,0:23
9 427229 . T G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 427233 . T G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 428730 . CA CAA 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 429086 . G T 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 429128 . G T 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 429929 . G C 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 431097 . A C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 431231 . T G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 431236 . T G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 431545 . ATT AT 13.9 . INDEL;DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=15.9;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:28,0,31:29 0/1:28,0,31:29
9 432023 . C T 73.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:54,6,0:51 1/1:54,6,0:51
9 432248 . A C 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 432980 . A C 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 433021 . T A 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.019,1,0.16 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 433988 . A G 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 436530 . A G 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.0062,1,1 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 436547 . G A 31.3 . DP=6;AF1=0.5003;CI95=0.5,0.5;DP4=2,0,4,0;MQ=37;FQ=23.9;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,7.3e-07,1,1 GT:PL:GQ 0/1:33,0,28:30 0/1:33,0,28:30
9 436848 . A G 15.2 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 436866 . C A 5.03 . DP=6;AF1=0.4968;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,9.4e-08,1,0.00011 GT:PL:GQ 0/1:19,0,59:22 0/1:19,0,59:22
9 436871 . C A 5.03 . DP=6;AF1=0.4968;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,1.3e-05,1,1 GT:PL:GQ 0/1:19,0,59:22 0/1:19,0,59:22
9 437940 . T C 149 . DP=8;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:92,9,0:57 1/1:92,9,0:57
9 439190 . C G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 439448 . T C 99.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:67,6,0:51 1/1:67,6,0:51
9 439506 . T G 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 439880 . A C 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 441668 . T G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 441714 . TGG TG 27.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 441754 . G T 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 441910 . C CT 9.94 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 441951 . T G 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,2.5e-07,1,1 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 441988 . T G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 441995 . T G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 443074 . C T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 443156 . A G 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,0.00064 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 444909 . G A 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 444911 . G A 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 445061 . C T,G 188 . DP=20;AF1=1;CI95=1,1;DP4=0,0,20,0;MQ=37;FQ=-55.7;QCHI2=0;PCHI2=0.998;PC2=3,3 GT:PL:GQ 1/1:112,27,0,111,15,108:99 1/1:112,27,0,111,15,108:99
9 450960 . A G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 453638 . T C 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 454200 . G C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 454516 . CA C 31.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 454958 . C CG 72 . INDEL;DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=32;FQ=-41.8;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:57,6,0:51 1/1:57,6,0:51
9 459940 . G A 70.7 . DP=50;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:53,9,0:57 1/1:53,9,0:57
9 461989 . C T 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 463573 . C T 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 464845 . G T 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 476628 . A G 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 508433 . AT A 31.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 516304 . A C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 519798 . C G 23.3 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=24.8;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:29,0,31:30 0/1:29,0,31:30
9 519830 . A G 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 520309 . C T 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 524746 . A C 27 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:30,3,0:42 1/1:30,3,0:42
9 526081 . C T 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=23;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 526111 . G A 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=23;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 527638 . T G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 527644 . T G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 530625 . A C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 531160 . A C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 565546 . G T 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 568706 . T G 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 586839 . A G 31 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:32,3,0:42 1/1:32,3,0:42
9 587802 . A C 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 588400 . A C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 588412 . A C 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 594582 . T G 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 594588 . C G 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 596968 . G T 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 606159 . A C 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 606164 . A C 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 614765 . TGG TG 13.9 . INDEL;DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=15.9;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:28,0,31:29 0/1:28,0,31:29
9 617374 . G T 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 621891 . T G 5.04 . DP=4;AF1=0.4971;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.23;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,29:22 0/1:19,0,29:22
9 621902 . A C 13.2 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 623294 . C G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 627898 . C A 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 629547 . A C 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 630312 . G C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 631023 . C G 31 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:32,3,0:42 1/1:32,3,0:42
9 632851 . A T 27 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:30,3,0:42 1/1:30,3,0:42
9 632858 . T G 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 633619 . A C 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=20;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 635005 . A G 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 640563 . G A 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 640762 . C A 39 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 641609 . GTTT GTT 25.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 648368 . C A 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 651371 . C A 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 657141 . ACTCTCTCT ACTCTCT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 659339 . T G 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 662085 . A C 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 663586 . G T 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 663588 . G T 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 663595 . A C 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 670967 . C G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 672761 . A C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 674963 . T G 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 676993 . C A 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 678036 . TAAAA TAA 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 679195 . T C 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 684335 . T G 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 686571 . G T 27 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:30,3,0:42 1/1:30,3,0:42
9 692496 . G A 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 697093 . C A 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 701134 . A C 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 701587 . A AG 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 704524 . T A 17.1 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 704526 . T G 5.04 . DP=4;AF1=0.4976;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.07;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,25:21 0/1:19,0,25:21
9 704549 . T G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 708192 . A G 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 708850 . T G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 709763 . A G 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 710972 . C G 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 713872 . C G 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1.7e-05,1,1 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 714020 . C T 51.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:43,6,0:51 1/1:43,6,0:51
9 714760 . G C 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 719813 . CTTTT CTT 19.8 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=19.8;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 721576 . T TA 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 725207 . G A 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 725858 . T TC 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 726481 . A AG 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 728983 . T G 8.08 . DP=4;AF1=0.4982;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:21,0,31:24 0/1:21,0,31:24
9 729457 . A C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 729820 . G A 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 730492 . C G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 732075 . A C 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 733956 . A AT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 734037 . A AT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 734925 . T A 51.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:43,6,0:51 1/1:43,6,0:51
9 735007 . G C 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 735009 . A C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 735073 . G T 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 735705 . T C 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 735719 . G C 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 737343 . C A 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.00011,1,1 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 772288 . T C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 829461 . A C 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 835015 . C T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 836272 . C G 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 842398 . A C 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 844865 . C G 3.79 . DP=4;AF1=0.4963;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:18,0,30:21 0/1:18,0,30:21
9 850647 . T C 27.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=27.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 850934 . A C 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=32;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 851318 . G T 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 851408 . C A 11.6 . DP=4;AF1=0.4989;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=14.4;QCHI2=0;PCHI2=0.989;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:23,0,31:25 0/1:23,0,31:25
9 851953 . T C 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 852622 . C A 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 853106 . T C 123 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=4,0,6,0;MQ=37;FQ=74.2;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,0.0066,1,1 GT:PL:GQ 0/1:79,0,53:56 0/1:79,0,53:56
9 853155 . T C 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=10,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.0019,1,1 GT:PL:GQ 0/1:19,0,114:22 0/1:19,0,114:22
9 853674 . A C 27.3 . DP=6;AF1=0.5002;CI95=0.5,0.5;DP4=2,0,4,0;MQ=37;FQ=23.3;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,5.3e-05,1,0 GT:PL:GQ 0/1:31,0,28:29 0/1:31,0,28:29
9 853716 . T C 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,2e-05,1,0.0059 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 853723 . C G 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,9.4e-08,1,1 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 853983 . A AG 19.8 . INDEL;DP=4;AF1=0.5001;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.7;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:31,0,30:30 0/1:31,0,30:30
9 854011 . T C 73.2 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=4,0,6,0;MQ=37;FQ=72.1;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,7.4e-10,1,1 GT:PL:GQ 0/1:54,0,53:53 0/1:54,0,53:53
9 854754 . A C 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 858394 . C T 87.2 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=26,0,14,0;MQ=33;FQ=90.2;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,8.2e-06,0.23,0.21 GT:PL:GQ 0/1:61,0,148:64 0/1:61,0,148:64
9 860283 . G T 3.79 . DP=6;AF1=0.496;CI95=0.25,0.5;DP4=4,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,5.3e-06,1,1 GT:PL:GQ 0/1:18,0,59:21 0/1:18,0,59:21
9 860401 . A G 3.79 . DP=6;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 860884 . AC A 111 . INDEL;DP=6;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=33;FQ=-45;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:77,9,0:57 1/1:77,9,0:57
9 861110 . A G 6.25 . DP=8;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 862483 . TGGG TGG 12 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12;QCHI2=0;PCHI2=0.994;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:27,0,27:27 0/1:27,0,27:27
9 862889 . C T 3.61 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 863829 . TC T 71.7 . INDEL;DP=14;AF1=0.5004;CI95=0.5,0.5;DP4=2,0,4,0;MQ=37;FQ=16.8;QCHI2=0;PCHI2=0.999;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:57,0,28:31 0/1:57,0,28:31
9 864613 . G T 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 864816 . C A 21.1 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 865131 . G A 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 865476 . A G 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 865593 . G T 11.6 . DP=4;AF1=0.4989;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=14.4;QCHI2=0;PCHI2=0.989;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:23,0,31:25 0/1:23,0,31:25
9 867413 . A C 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 867535 . C G 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 867646 . A C 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 868453 . A G 3.79 . DP=12;AF1=0.496;CI95=0.25,0.5;DP4=10,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,4.6e-05,1,0.13 GT:PL:GQ 0/1:18,0,114:21 0/1:18,0,114:21
9 868457 . T G 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=10,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.016,1,1 GT:PL:GQ 0/1:19,0,114:22 0/1:19,0,114:22
9 868874 . C A 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 869476 . A G 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 871481 . C G 39.2 . DP=6;AF1=0.5003;CI95=0.5,0.5;DP4=2,0,4,0;MQ=37;FQ=24.2;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0.00029,1,0.053 GT:PL:GQ 0/1:37,0,28:30 0/1:37,0,28:30
9 872347 . A G 15.4 . DP=8;AF1=0.4992;CI95=0.5,0.5;DP4=4,0,4,0;MQ=34;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0.00015,0.067,1 GT:PL:GQ 0/1:25,0,56:28 0/1:25,0,56:28
9 872353 . T C 17.4 . DP=6;AF1=0.4994;CI95=0.5,0.5;DP4=4,0,2,0;MQ=33;FQ=20.3;QCHI2=0;PCHI2=0.994;PC2=3,3;PV4=1,1.5e-05,1,0.041 GT:PL:GQ 0/1:26,0,49:29 0/1:26,0,49:29
9 875317 . TG TGG 75.7 . INDEL;DP=6;AF1=0.5008;CI95=0.5,0.5;DP4=2,0,4,0;MQ=37;FQ=11.1;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:59,0,25:28 0/1:59,0,25:28
9 875851 . A C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 876391 . G T 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.072,1,0.0003 GT:PL:GQ 0/1:19,0,77:22 0/1:19,0,77:22
9 877718 . C G 27.3 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=27.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 878895 . G A 135 . DP=16;AF1=0.5064;CI95=0.5,0.5;DP4=2,0,12,0;MQ=37;FQ=3.25;QCHI2=0;PCHI2=0.982;PC2=3,3;PV4=1,2.8e-07,1,0.28 GT:PL:GQ 0/1:85,0,16:19 0/1:85,0,16:19
9 882130 . CTT CT 8.41 . INDEL;DP=6;AF1=0.4992;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=11.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,59:28 0/1:25,0,59:28
9 882340 . TA T 12 . INDEL;DP=6;AF1=0.4995;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=14.9;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.16,1,0.0073 GT:PL:GQ 0/1:27,0,58:30 0/1:27,0,58:30
9 882705 . G T 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 882843 . T C 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 884593 . A C 5.03 . DP=6;AF1=0.4968;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,4e-05,1,1 GT:PL:GQ 0/1:19,0,59:22 0/1:19,0,59:22
9 884732 . CCACACA CCACA 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 885859 . C A 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 888176 . T C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 888367 . A AT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 889389 . A C 6.54 . DP=4;AF1=0.5025;CI95=0.5,0.5;DP4=2,0,2,0;MQ=31;FQ=3.84;QCHI2=0;PCHI2=0.972;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:20,0,17:18 0/1:20,0,17:18
9 890252 . G A 33.2 . DP=16;AF1=0.4999;CI95=0.5,0.5;DP4=8,0,4,0;MQ=37;FQ=36.3;QCHI2=0;PCHI2=0.999;PC2=3,3;PV4=1,0.003,1,1 GT:PL:GQ 0/1:34,0,96:37 0/1:34,0,96:37
9 892228 . T C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 892525 . C G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 892709 . C A 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 900184 . T C 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 901256 . C A 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 904245 . C T 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 909822 . TCC TCCC 302 . INDEL;DP=26;AF1=1;CI95=1,1;DP4=0,0,20,0;MQ=37;FQ=-66.3;QCHI2=0;PCHI2=0.999;PC2=3,3 GT:PL:GQ 1/1:173,30,0:99 1/1:173,30,0:99
9 910211 . C T 9.56 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 910214 . G C 3.61 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 911291 . G A 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 913921 . A C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 915350 . G T 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 916934 . A G 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 919032 . G C 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 926715 . A C 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 942787 . T G 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 946496 . TCCCC TCCC 9.94 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 946837 . G T 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 946840 . A G 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 947676 . A C 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 948019 . CTT CT 13.9 . INDEL;DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=15.9;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:28,0,31:29 0/1:28,0,31:29
9 949816 . G C 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.0026,1,0.022 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 950617 . C G 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 950630 . G A 17.4 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=19.9;QCHI2=0;PCHI2=0.994;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:26,0,31:28 0/1:26,0,31:28
9 951650 . A T 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 951664 . A C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 953659 . AT A 6.77 . INDEL;DP=10;AF1=0.499;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=9.28;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:24,0,81:27 0/1:24,0,81:27
9 955185 . G A 4.31 . DP=4;AF1=0.5515;CI95=0.5,0.75;DP4=2,0,2,0;MQ=28;FQ=-16.3;QCHI2=0;PCHI2=0.908;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:18,0,7:9 0/1:18,0,7:9
9 955915 . C A 3.79 . DP=10;AF1=0.496;CI95=0.25,0.5;DP4=8,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,3.5e-10,1,0.083 GT:PL:GQ 0/1:18,0,100:21 0/1:18,0,100:21
9 956046 . A G 107 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=4,0,6,0;MQ=35;FQ=74.2;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,0.0063,0.12,1 GT:PL:GQ 0/1:71,0,53:56 0/1:71,0,53:56
9 956204 . A C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 957860 . A C 13.5 . DP=6;AF1=0.499;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.4;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,0.00038,1,1 GT:PL:GQ 0/1:24,0,59:27 0/1:24,0,59:27
9 958648 . C A 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 958900 . G C 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 959007 . CTTTTT CTTTT 30 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-41.8;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:36,6,0:51 1/1:36,6,0:51
9 959788 . G A 3.79 . DP=8;AF1=0.496;CI95=0.25,0.5;DP4=6,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0.00018,1,0.00022 GT:PL:GQ 0/1:18,0,81:21 0/1:18,0,81:21
9 960281 . T C 13.5 . DP=6;AF1=0.499;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.4;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,0.0064,1,1 GT:PL:GQ 0/1:24,0,59:27 0/1:24,0,59:27
9 962739 . T C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 962921 . A C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 963902 . G A 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 964306 . C T 8.08 . DP=6;AF1=0.4982;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:21,0,31:24 0/1:21,0,31:24
9 965417 . T A 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 965527 . TAA TA 9.94 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-38.3;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 965919 . A G 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 968425 . T A 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 968426 . G C 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 969090 . T G 15.4 . DP=8;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0.0012,1,1 GT:PL:GQ 0/1:25,0,81:28 0/1:25,0,81:28
9 970524 . G A 15.4 . DP=10;AF1=0.4992;CI95=0.5,0.5;DP4=4,0,4,0;MQ=34;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,6.9e-05,1,1 GT:PL:GQ 0/1:25,0,46:28 0/1:25,0,46:28
9 970783 . A AG 13.9 . INDEL;DP=8;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.8;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1,1,0.31 GT:PL:GQ 0/1:28,0,57:31 0/1:28,0,57:31
9 974821 . ATTTT ATTT 81.2 . INDEL;DP=6;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-45;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:62,9,0:57 1/1:62,9,0:57
9 975413 . T C 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=23;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 976028 . ATT AT 8.41 . INDEL;DP=8;AF1=0.4992;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=11.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0.00011,1,1 GT:PL:GQ 0/1:25,0,59:28 0/1:25,0,59:28
9 976890 . T G 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,1.2e-07,1,1 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 977186 . A C 13.5 . DP=8;AF1=0.499;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=16.4;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,6.4e-06,1,1 GT:PL:GQ 0/1:24,0,81:27 0/1:24,0,81:27
9 977513 . T G 13.5 . DP=16;AF1=0.499;CI95=0.5,0.5;DP4=12,0,4,0;MQ=37;FQ=16.4;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,0.0036,1,0.28 GT:PL:GQ 0/1:24,0,122:27 0/1:24,0,122:27
9 977514 . A C 41.2 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=12,0,4,0;MQ=37;FQ=44.2;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,0.032,1,1 GT:PL:GQ 0/1:38,0,119:41 0/1:38,0,119:41
9 977551 . CGG CG 106 . INDEL;DP=18;AF1=0.5008;CI95=0.5,0.5;DP4=2,0,6,0;MQ=37;FQ=11.1;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:74,0,25:28 0/1:74,0,25:28
9 977963 . C A 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 978094 . CA CAA 19.8 . INDEL;DP=4;AF1=0.5002;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=15.9;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:31,0,28:29 0/1:31,0,28:29
9 982227 . G C 19.3 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=21.7;QCHI2=0;PCHI2=0.995;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:27,0,31:29 0/1:27,0,31:29
9 984434 . C CT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 985260 . A G 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 1025858 . CTG C 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 1027085 . G T 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 1032298 . A T 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 1034082 . G A 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 1034228 . G A 87.3 . DP=8;AF1=0.5008;CI95=0.5,0.5;DP4=2,0,6,0;MQ=34;FQ=18.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0.00021,0.21,0.18 GT:PL:GQ 0/1:61,0,25:28 0/1:61,0,25:28
9 1034624 . T C 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 1035247 . G C 9.22 . DP=4;AF1=0.9969;CI95=0.5,1;DP4=2,0,2,0;MQ=18;FQ=-28.3;QCHI2=1;PCHI2=0.752;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 1/1:20,1,0:23 1/1:20,1,0:23
9 1035252 . A C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 1035255 . A G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 1040275 . C A 13.5 . DP=6;AF1=0.499;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.4;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,1.4e-07,1,1 GT:PL:GQ 0/1:24,0,59:27 0/1:24,0,59:27
9 1041445 . AAGAGAG AAGAG 114 . INDEL;DP=12;AF1=0.5008;CI95=0.5,0.5;DP4=2,0,6,0;MQ=37;FQ=11.1;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0.019,1,0.0014 GT:PL:GQ 0/1:78,0,25:28 0/1:78,0,25:28
9 1041844 . C A 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=8,0,4,0;MQ=35;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,2.7e-07,0.014,1 GT:PL:GQ 0/1:19,0,98:22 0/1:19,0,98:22
9 1042181 . AGG AG 49.7 . INDEL;DP=62;AF1=0.5;CI95=0.5,0.5;DP4=38,0,8,0;MQ=37;FQ=52.7;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,1,0.00057,1.7e-09 GT:PL:GQ 0/1:46,0,158:49 0/1:46,0,158:49
9 1043058 . T C 9.56 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 1043332 . T C 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.001,1,1 GT:PL:GQ 0/1:22,0,100:25 0/1:22,0,100:25
9 1043647 . T C 65.2 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=4,0,6,0;MQ=37;FQ=67.3;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,1.2e-06,1,0.03 GT:PL:GQ 0/1:50,0,53:51 0/1:50,0,53:51
9 1044619 . G T 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 1044870 . C A 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.021,1,0.16 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 1045089 . A G 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 1046952 . AGG AG 78 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-41.8;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:60,6,0:51 1/1:60,6,0:51
9 1049547 . T C 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 1051543 . C G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 1051546 . C A 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 1052533 . A G 60.7 . DP=6;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=20;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:48,9,0:57 1/1:48,9,0:57
9 1052607 . T TC 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 1053268 . A G 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.00015,1,1 GT:PL:GQ 0/1:22,0,100:25 0/1:22,0,100:25
9 1054729 . C A 21.3 . DP=8;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.0049,1,0.36 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 1055004 . T G 3.79 . DP=6;AF1=0.496;CI95=0.25,0.5;DP4=4,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,5.7e-05,1,0.003 GT:PL:GQ 0/1:18,0,59:21 0/1:18,0,59:21
9 1055517 . CA CAA 33.7 . INDEL;DP=34;AF1=0.5;CI95=0.5,0.5;DP4=10,0,4,0;MQ=36;FQ=36.7;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,1,0.0063,0.16 GT:PL:GQ 0/1:38,0,102:41 0/1:38,0,102:41
9 1055519 . GA GAA 89.7 . INDEL;DP=28;AF1=0.5;CI95=0.5,0.5;DP4=8,0,10,0;MQ=31;FQ=92.7;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,0.0017,0,0.0041 GT:PL:GQ 0/1:66,0,79:69 0/1:66,0,79:69
9 1055902 . T G 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=34;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.00021,1,0.016 GT:PL:GQ 0/1:22,0,88:25 0/1:22,0,88:25
9 1055913 . C T 39.2 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=6,0,4,0;MQ=34;FQ=42.2;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,0.00027,0.03,0.25 GT:PL:GQ 0/1:37,0,79:40 0/1:37,0,79:40
9 1056359 . GA GAA 33.5 . INDEL;DP=8;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 1056785 . ACT ACTCT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 1056922 . G C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 1056931 . G A 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 1057023 . A C 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 1057790 . T G 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 1057838 . G A 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 1059805 . C G 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 1061354 . G T 41.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=23;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:38,6,0:51 1/1:38,6,0:51
9 1061486 . G T 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=18;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 1063012 . T TCA 33.5 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 1063441 . T G 43.5 . DP=74;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:39,6,0:51 1/1:39,6,0:51
9 1063975 . ACC ACCC 196 . INDEL;DP=24;AF1=0.5;CI95=0.5,0.5;DP4=6,0,12,0;MQ=36;FQ=76.7;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,1,0.16,0.28 GT:PL:GQ 0/1:119,0,58:61 0/1:119,0,58:61
9 1064940 . C T 49.5 . DP=34;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:42,6,0:51 1/1:42,6,0:51
9 1065204 . TAAAA TAAAAA 125 . INDEL;DP=18;AF1=0.828;CI95=0.5,1;DP4=2,0,14,0;MQ=36;FQ=-33.2;QCHI2=1;PCHI2=0.737;PC2=3,3;PV4=1,1,0.3,0.017 GT:PL:GQ 1/1:82,0,1:5 1/1:82,0,1:5
9 1078240 . A G 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 1084491 . A G 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 1085258 . TTCT TT 19.8 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=19.8;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 1086797 . AACA AACACA,ACACA 999 . INDEL;DP=302;AF1=1;CI95=1,1;DP4=2,0,276,0;MQ=37;FQ=-283;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,1,0.38,1 GT:PL:GQ 1/1:238,255,0,241,211,221:99 1/1:238,255,0,241,211,221:99
9 1086798 . AC ACNC 999 . INDEL;DP=292;AF1=1;CI95=1,1;DP4=2,0,276,0;MQ=37;FQ=-293;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,1,0.38,1 GT:PL:GQ 1/1:255,255,0:99 1/1:255,255,0:99
9 1087885 . A C 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,1.4e-10,1,1 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 1088207 . CA C 12 . INDEL;DP=6;AF1=0.4995;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=14.9;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0,1,0.016 GT:PL:GQ 0/1:27,0,59:30 0/1:27,0,59:30
9 1088709 . AAT A 246 . INDEL;DP=58;AF1=0.504;CI95=0.5,0.5;DP4=4,0,30,0;MQ=36;FQ=-4.87;QCHI2=0;PCHI2=0.988;PC2=3,3;PV4=1,0.00065,0.23,0.22 GT:PL:GQ 0/1:144,0,18:21 0/1:144,0,18:21
9 1089616 . T C 254 . DP=100;AF1=1;CI95=1,1;DP4=0,0,82,0;MQ=37;FQ=-152;QCHI2=0;PCHI2=1;PC2=3,3 GT:PL:GQ 1/1:145,123,0:99 1/1:145,123,0:99
9 1091806 . GGTGTGTGTGTGTGTGTGTGTGTGTGTGTG GGTGTGTGTGTGTGTGTGTGTGTGTGTG 69.7 . INDEL;DP=42;AF1=0.5;CI95=0.5,0.5;DP4=4,0,4,0;MQ=37;FQ=38.7;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:56,0,39:42 0/1:56,0,39:42
9 1091869 . T G 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=10,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,1.4e-11,1,0.34 GT:PL:GQ 0/1:19,0,114:22 0/1:19,0,114:22
9 1092138 . G A 146 . DP=46;AF1=1;CI95=1,1;DP4=0,0,34,0;MQ=36;FQ=-79.7;QCHI2=0;PCHI2=1;PC2=3,3 GT:PL:GQ 1/1:91,51,0:99 1/1:91,51,0:99
9 1092195 . G C 97.2 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=8,0,16,0;MQ=37;FQ=100;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,5.6e-19,1,1 GT:PL:GQ 0/1:66,0,84:69 0/1:66,0,84:69
9 1092522 . CT C 25.2 . INDEL;DP=24;AF1=1;CI95=0.75,1;DP4=4,0,12,0;MQ=11;FQ=-45;QCHI2=0;PCHI2=0.894;PC2=3,3;PV4=1,0.14,1,1.7e-05 GT:PL:GQ 1/1:34,9,0:57 1/1:34,9,0:57
9 1093992 . A G 184 . DP=42;AF1=1;CI95=1,1;DP4=0,0,38,0;MQ=35;FQ=-85.7;QCHI2=0;PCHI2=1;PC2=3,3 GT:PL:GQ 1/1:110,57,0:99 1/1:110,57,0:99
9 1094398 . G A 119 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=30,0,10,0;MQ=36;FQ=122;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,0.00015,0.0056,0.3 GT:PL:GQ 0/1:77,0,161:80 0/1:77,0,161:80
9 1095403 . TCCCCCCCC TCCCCCC 12.2 . INDEL;DP=16;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-41.8;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:27,6,0:51 1/1:27,6,0:51
9 1097688 . T C,A 76.2 . DP=138;AF1=1;CI95=0.75,1;DP4=0,0,12,0;MQ=31;FQ=-43.7;QCHI2=0;PCHI2=0.97;PC2=3,3 GT:PL:GQ 1/1:64,23,8,49,0,46:78 1/1:64,23,8,49,0,46:78
9 1100044 . AT ATCT 13.9 . INDEL;DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.8;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1,1,0.063 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 1100491 . AT A 12 . INDEL;DP=6;AF1=0.4995;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=14.9;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.38,1,1 GT:PL:GQ 0/1:27,0,55:30 0/1:27,0,55:30
9 1100992 . T A 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.0086,1,1 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 1101253 . AT A 12 . INDEL;DP=6;AF1=0.4995;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=14.9;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0,1,0.13 GT:PL:GQ 0/1:27,0,59:30 0/1:27,0,59:30
9 1101448 . G T 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1.4e-06,1,0.11 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 1101951 . G T 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 1102386 . G A 83.2 . DP=44;AF1=0.5;CI95=0.5,0.5;DP4=24,0,16,0;MQ=35;FQ=86.2;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,2.1e-08,1,1 GT:PL:GQ 0/1:59,0,147:62 0/1:59,0,147:62
9 1102561 . C G 80.7 . DP=42;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=30;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:58,9,0:57 1/1:58,9,0:57
9 1102753 . A G 8.08 . DP=10;AF1=0.498;CI95=0.5,0.5;DP4=8,0,2,0;MQ=35;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,3.4e-07,1,0.12 GT:PL:GQ 0/1:21,0,93:24 0/1:21,0,93:24
9 1102796 . C G 97.2 . DP=62;AF1=0.5;CI95=0.5,0.5;DP4=32,0,20,0;MQ=37;FQ=100;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,2.7e-21,1,0.38 GT:PL:GQ 0/1:66,0,162:69 0/1:66,0,162:69
9 1103089 . T A 300 . DP=18;AF1=1;CI95=1,1;DP4=0,0,18,0;MQ=37;FQ=-55.7;QCHI2=0;PCHI2=0.998;PC2=3,3 GT:PL:GQ 1/1:168,27,0:99 1/1:168,27,0:99
9 1105889 . A G 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 1106711 . T A 37 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:35,3,0:42 1/1:35,3,0:42
9 1107260 . T G 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 1107939 . CTT CT 13.9 . INDEL;DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=15.9;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:28,0,31:29 0/1:28,0,31:29
9 1110282 . A C 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.12,1,0.23 GT:PL:GQ 0/1:22,0,56:25 0/1:22,0,56:25
9 1110788 . T G 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,5.7e-05,1,0.41 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 1111420 . A C 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.00016,1,1 GT:PL:GQ 0/1:22,0,100:25 0/1:22,0,100:25
9 1111967 . C CAT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 1112551 . A G 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 1112839 . T G 5.04 . DP=6;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 1113010 . A C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 1117764 . C T 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 1119710 . T G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 1120590 . T G 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 1120884 . C T 33.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:34,6,0:51 1/1:34,6,0:51
9 1121481 . A G 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 1125520 . G C 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=18;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 1128481 . AT A 31.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 1130127 . C T 90.4 . DP=10;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=37;FQ=-40.6;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:63,12,0:63 1/1:63,12,0:63
9 1130637 . G T 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 1132420 . G GA 9.94 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 1132961 . G T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 1132967 . T G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 1133455 . T G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 1135221 . C T 19.1 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 1135850 . G T 6.52 . DP=4;AF1=0.5007;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=5.68;QCHI2=0;PCHI2=0.976;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:20,0,19:20 0/1:20,0,19:20
9 1136723 . T G 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 1138755 . A C 17.4 . DP=6;AF1=0.4994;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=20.3;QCHI2=0;PCHI2=0.994;PC2=3,3;PV4=1,0.00088,1,0 GT:PL:GQ 0/1:26,0,59:29 0/1:26,0,59:29
9 1138765 . G A 73.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:54,6,0:51 1/1:54,6,0:51
9 1139711 . C T 3.61 . DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 1140387 . C A 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,1.1e-05,1,0.24 GT:PL:GQ 0/1:22,0,100:25 0/1:22,0,100:25
9 1141449 . T C 17.4 . DP=6;AF1=0.4994;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=20.3;QCHI2=0;PCHI2=0.994;PC2=3,3;PV4=1,0.0053,1,1 GT:PL:GQ 0/1:26,0,59:29 0/1:26,0,59:29
9 1141749 . G A 178 . DP=14;AF1=1;CI95=1,1;DP4=0,0,12,0;MQ=37;FQ=-46.7;QCHI2=0;PCHI2=0.984;PC2=3,3 GT:PL:GQ 1/1:107,18,0:75 1/1:107,18,0:75
9 1142114 . T G 27.3 . DP=10;AF1=0.4998;CI95=0.5,0.5;DP4=6,0,4,0;MQ=30;FQ=30.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0.0056,0.018,0.11 GT:PL:GQ 0/1:31,0,70:34 0/1:31,0,70:34
9 1142208 . T C 126 . DP=18;AF1=1;CI95=1,1;DP4=0,0,14,0;MQ=37;FQ=-49.7;QCHI2=0;PCHI2=0.992;PC2=3,3 GT:PL:GQ 1/1:81,21,0:87 1/1:81,21,0:87
9 1142750 . C T 188 . DP=16;AF1=1;CI95=1,1;DP4=0,0,14,0;MQ=37;FQ=-49.7;QCHI2=0;PCHI2=0.992;PC2=3,3 GT:PL:GQ 1/1:112,21,0:87 1/1:112,21,0:87
9 1143112 . G C 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=10,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,1.1e-06,1,0.14 GT:PL:GQ 0/1:19,0,114:22 0/1:19,0,114:22
9 1143212 . G A 25.5 . DP=24;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:30,6,0:51 1/1:30,6,0:51
9 1143511 . C A 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=10,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.00042,1,1 GT:PL:GQ 0/1:19,0,114:22 0/1:19,0,114:22
9 1144259 . T A 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,6.3e-07,1,0.48 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 1145284 . C A 29 . DP=20;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 1145338 . T A 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 1145683 . G A 246 . DP=60;AF1=1;CI95=1,1;DP4=0,0,54,0;MQ=36;FQ=-110;QCHI2=0;PCHI2=1;PC2=3,3 GT:PL:GQ 1/1:141,81,0:99 1/1:141,81,0:99
9 1146009 . G C 76.4 . DP=12;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=37;FQ=-40.6;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:56,12,0:63 1/1:56,12,0:63
9 1147401 . A G 55.2 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=8,0,4,0;MQ=37;FQ=58.2;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,0.0046,1,0.082 GT:PL:GQ 0/1:45,0,98:48 0/1:45,0,98:48
9 1147892 . T C 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=10,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.00021,1,1 GT:PL:GQ 0/1:19,0,114:22 0/1:19,0,114:22
9 1148336 . TAAAAAA TAAAAA 41.2 . INDEL;DP=6;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-45;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:42,9,0:57 1/1:42,9,0:57
9 1148420 . A C 8.08 . DP=22;AF1=0.498;CI95=0.5,0.5;DP4=16,0,4,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0.00017,1,0.035 GT:PL:GQ 0/1:21,0,140:24 0/1:21,0,140:24
9 1150592 . A C 8.08 . DP=4;AF1=0.4982;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:21,0,31:24 0/1:21,0,31:24
9 1152067 . T C 29 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 1152285 . A G 6.47 . DP=10;AF1=0.4975;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=8.93;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0.038,1,1 GT:PL:GQ 0/1:20,0,98:23 0/1:20,0,98:23
9 1153176 . A C 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 1153182 . A C 15.4 . DP=4;AF1=0.4995;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=17.7;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,29:27 0/1:25,0,29:27
9 1153222 . A G 33 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 1153258 . GCCC GCC 25.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 1153682 . A G 94.4 . DP=10;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=37;FQ=-40.6;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:65,12,0:63 1/1:65,12,0:63
9 1153749 . G A 112 . DP=10;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=37;FQ=-40.6;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:74,12,0:63 1/1:74,12,0:63
9 1153856 . CAT C 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 1156994 . T C 72.4 . DP=10;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=37;FQ=-40.6;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:54,12,0:63 1/1:54,12,0:63
9 1158376 . G A 39.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:37,6,0:51 1/1:37,6,0:51
9 1158636 . C G 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 1160616 . T G 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.0054,1,0 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 1161745 . A G 62.7 . DP=6;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=33;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:49,9,0:57 1/1:49,9,0:57
9 1162339 . C G 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,2.1e-07,1,6.5e-05 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 1163570 . T C 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=10,0,2,0;MQ=33;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.0015,1,0.039 GT:PL:GQ 0/1:19,0,101:22 0/1:19,0,101:22
9 1163677 . A C 5.03 . DP=6;AF1=0.4968;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:19,0,59:22 0/1:19,0,59:22
9 1165422 . A G 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.16,1,1 GT:PL:GQ 0/1:22,0,54:25 0/1:22,0,54:25
9 1165564 . A T,C 35 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:52,21,18,34,0,31:42 1/1:52,21,18,34,0,31:42
9 1166820 . A G 91.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:63,6,0:51 1/1:63,6,0:51
9 1167612 . C A 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,1.1e-07,1,0.16 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 1168042 . T G 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.00034,1,1 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 1168267 . C A 90.7 . DP=6;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:63,9,0:57 1/1:63,9,0:57
9 1169588 . G T 6.47 . DP=6;AF1=0.4975;CI95=0.5,0.5;DP4=4,0,2,0;MQ=33;FQ=8.93;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0.33,1,1 GT:PL:GQ 0/1:20,0,43:23 0/1:20,0,43:23
9 1169907 . G A 141 . DP=8;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:88,9,0:57 1/1:88,9,0:57
9 1169964 . T A 13.5 . DP=6;AF1=0.499;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.4;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,0,1,7.9e-05 GT:PL:GQ 0/1:24,0,59:27 0/1:24,0,59:27
9 1169992 . C T 116 . DP=10;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=37;FQ=-40.6;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:76,12,0:63 1/1:76,12,0:63
9 1170591 . T C 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=33;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,9.4e-08,1,1 GT:PL:GQ 0/1:22,0,49:25 0/1:22,0,49:25
9 1171460 . A C 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,1.1e-10,1,0.11 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 1172409 . A AT 19.8 . INDEL;DP=4;AF1=0.5001;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.7;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,30:30 0/1:31,0,30:30
9 1172457 . G T 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 1172851 . T C 99.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:67,6,0:51 1/1:67,6,0:51
9 1173765 . G A 61.2 . DP=6;AF1=0.5004;CI95=0.5,0.5;DP4=2,0,4,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.999;PC2=3,3;PV4=1,0.0011,1,0.063 GT:PL:GQ 0/1:48,0,28:31 0/1:48,0,28:31
9 1174383 . T TC 17.8 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=17.8;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:30,0,30:30 0/1:30,0,30:30
9 1174737 . T G 19.3 . DP=6;AF1=0.4995;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=22.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.00018,1,0.16 GT:PL:GQ 0/1:27,0,59:30 0/1:27,0,59:30
9 1174847 . T C 122 . DP=16;AF1=1;CI95=1,1;DP4=0,0,12,0;MQ=32;FQ=-46.7;QCHI2=0;PCHI2=0.984;PC2=3,3 GT:PL:GQ 1/1:79,18,0:75 1/1:79,18,0:75
9 1177633 . TG TGCG 95.7 . INDEL;DP=42;AF1=0.5;CI95=0.5,0.5;DP4=8,0,8,0;MQ=36;FQ=98.6;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,1,0.074,1 GT:PL:GQ 0/1:69,0,78:71 0/1:69,0,78:71
9 1178583 . T G 5.03 . DP=6;AF1=0.4968;CI95=0.5,0.5;DP4=4,0,2,0;MQ=33;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:19,0,43:22 0/1:19,0,43:22
9 1178637 . A T 33 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 1178808 . C G 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.0022,1,1 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 1178894 . C T 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 1181246 . CTGGGT CT 19.8 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=19.8;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 1181345 . G T 33 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 1181492 . C A 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,2.2e-05,1,0.23 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 1228170 . A C 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 1228352 . C T 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=20;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 1228895 . C A 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 1228910 . A G 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 1229009 . G A 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 1229120 . A G 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 1230887 . C A 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.068,1,1 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 1234207 . G A 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 1247742 . C T 66.7 . DP=6;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=22;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:51,9,0:57 1/1:51,9,0:57
9 1248928 . T C 7.84 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 1249461 . T G 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 1249541 . T C 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 1250405 . T TA 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 1251892 . A G 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 1251910 . G T 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 1253461 . G A 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 1255228 . A G 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 1255569 . C T 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 1256838 . C A 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,8.5e-06,1,0.2 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 1256891 . G A 140 . DP=14;AF1=1;CI95=0.75,1;DP4=0,0,10,0;MQ=37;FQ=-43.7;QCHI2=0;PCHI2=0.97;PC2=3,3 GT:PL:GQ 1/1:88,15,0:78 1/1:88,15,0:78
9 1257494 . A C 3.79 . DP=6;AF1=0.496;CI95=0.25,0.5;DP4=4,0,2,0;MQ=33;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0.00012,1,1 GT:PL:GQ 0/1:18,0,49:21 0/1:18,0,49:21
9 1257553 . T G 6.47 . DP=6;AF1=0.4975;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=8.93;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0.00041,1,0.019 GT:PL:GQ 0/1:20,0,59:23 0/1:20,0,59:23
9 1258238 . T C 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,1.8e-06,1,1 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 1258870 . C A 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 1259809 . A G 206 . DP=16;AF1=1;CI95=1,1;DP4=0,0,14,0;MQ=36;FQ=-49.7;QCHI2=0;PCHI2=0.992;PC2=3,3 GT:PL:GQ 1/1:121,21,0:87 1/1:121,21,0:87
9 1259889 . T C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 1259937 . CCTG CCTGCTG 260 . INDEL;DP=18;AF1=1;CI95=1,1;DP4=0,0,16,0;MQ=36;FQ=-60.3;QCHI2=0;PCHI2=0.996;PC2=3,3 GT:PL:GQ 1/1:152,24,0:99 1/1:152,24,0:99
9 1259939 . TG TGCCG 142 . INDEL;DP=20;AF1=1;CI95=1,1;DP4=0,0,14,0;MQ=37;FQ=-57.3;QCHI2=0;PCHI2=0.992;PC2=3,3 GT:PL:GQ 1/1:93,21,0:87 1/1:93,21,0:87
9 1260481 . T G 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=31;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.067,1,0.17 GT:PL:GQ 0/1:19,0,62:22 0/1:19,0,62:22
9 1260695 . T C 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 1260892 . G A 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,1.1e-06,1,0.47 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 1260952 . C A 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 1261656 . G A 11.6 . DP=4;AF1=0.4989;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=14.4;QCHI2=0;PCHI2=0.989;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:23,0,31:25 0/1:23,0,31:25
9 1261784 . T TC 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 1261838 . A G 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 1262603 . A T 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 1262634 . G T 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 1262648 . G T 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 1265139 . T C 27.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:31,6,0:51 1/1:31,6,0:51
9 1265341 . C T 35 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 1266208 . T G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 1266341 . T G 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 1269767 . G A 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=23;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 1269886 . T C 11.6 . DP=4;AF1=0.4989;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=14.4;QCHI2=0;PCHI2=0.989;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:23,0,31:25 0/1:23,0,31:25
9 1273650 . A G 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 1273885 . AT A 17.8 . INDEL;DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.7;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:30,0,31:30 0/1:30,0,31:30
9 1274669 . T A 25.3 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=26.1;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:30,0,31:30 0/1:30,0,31:30
9 1275657 . CAT C 92 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-41.8;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:67,6,0:51 1/1:67,6,0:51
9 1275718 . CTGTGT CTGTGTGT 92 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-41.8;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:67,6,0:51 1/1:67,6,0:51
9 1276251 . G T 5.07 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=25;FQ=5.07;QCHI2=0;PCHI2=0.975;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:19,0,19:19 0/1:19,0,19:19
9 1276275 . G T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 1276614 . A G 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 1276734 . T G 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 1278538 . ATG ATGTG 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 1279184 . G A 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 1312008 . T G 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 1453822 . C T 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 1453878 . G A 9.56 . DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 1453909 . G T 23.3 . DP=4;AF1=0.5029;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.23;QCHI2=0;PCHI2=0.988;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:29,0,19:22 0/1:29,0,19:22
9 1462758 . A C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 1505589 . G T 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,7.5e-13,1,1 GT:PL:GQ 0/1:22,0,100:25 0/1:22,0,100:25
9 1510008 . A G 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 1551251 . C A 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 1569199 . C A 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 1570591 . T A 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 1570662 . CAAA CAAAA 12 . INDEL;DP=4;AF1=0.5003;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=9.78;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:27,0,25:26 0/1:27,0,25:26
9 1571965 . C T 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 1573331 . C T 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 1574637 . TGGG TGG 25.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 1575015 . T G 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 1578317 . C A 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 1580955 . A T 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 1581631 . T C 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 1582934 . T C 46.4 . DP=6;AF1=0.5718;CI95=0.5,1;DP4=2,0,4,0;MQ=31;FQ=-18.1;QCHI2=1;PCHI2=0.854;PC2=3,3;PV4=1,7.4e-08,1,1 GT:PL:GQ 0/1:40,0,6:8 0/1:40,0,6:8
9 1585241 . GCC GCCC 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 1585277 . T G 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 1585539 . A AG 13.9 . INDEL;DP=8;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.8;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1,1,0.0059 GT:PL:GQ 0/1:28,0,57:31 0/1:28,0,57:31
9 1586132 . C T 6.48 . DP=4;AF1=0.4981;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.72;QCHI2=0;PCHI2=0.982;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:20,0,26:22 0/1:20,0,26:22
9 1586479 . A C 47.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:41,6,0:51 1/1:41,6,0:51
9 1588688 . T C 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 1590327 . C A 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 1590551 . A AG 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 1592023 . C T 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,1.4e-07,1,1 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 1592045 . A C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 1599340 . T G 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 1599365 . A T 11.6 . DP=4;AF1=0.4995;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=13.1;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:23,0,25:24 0/1:23,0,25:24
9 1599369 . T G 9.81 . DP=4;AF1=0.4992;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=11.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:22,0,25:23 0/1:22,0,25:23
9 1599382 . A C 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 1599436 . C CTT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 1599772 . C A 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 1600498 . T C 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 1600727 . T G 5.09 . DP=4;AF1=0.5019;CI95=0.5,0.5;DP4=2,0,2,0;MQ=31;FQ=3.58;QCHI2=0;PCHI2=0.972;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:19,0,17:18 0/1:19,0,17:18
9 1600765 . T G 15.4 . DP=8;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=34;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0.15,1,0.42 GT:PL:GQ 0/1:25,0,67:28 0/1:25,0,67:28
9 1600811 . A G 37.6 . DP=14;AF1=0.5206;CI95=0.5,0.75;DP4=8,0,4,0;MQ=19;FQ=-9.61;QCHI2=0;PCHI2=0.944;PC2=3,3;PV4=1,3.8e-07,1,1 GT:PL:GQ 0/1:36,0,11:14 0/1:36,0,11:14
9 1600962 . G A 96.4 . DP=8;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=23;FQ=-40.6;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:66,12,0:63 1/1:66,12,0:63
9 1601499 . A G 37.2 . DP=6;AF1=0.5003;CI95=0.5,0.5;DP4=2,0,4,0;MQ=37;FQ=24.2;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,5.3e-08,1,1 GT:PL:GQ 0/1:36,0,28:30 0/1:36,0,28:30
9 1601744 . G A 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 1602781 . T C 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 1602799 . TCTCC TCTCCTCC 33.5 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 1603217 . G A 11.6 . DP=8;AF1=0.4987;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=14.4;QCHI2=0;PCHI2=0.99;PC2=3,3;PV4=1,2e-06,1,1 GT:PL:GQ 0/1:23,0,81:26 0/1:23,0,81:26
9 1604565 . ATC ATCTC 19.8 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=19.8;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 1605587 . G A 13.5 . DP=8;AF1=0.499;CI95=0.5,0.5;DP4=4,0,4,0;MQ=37;FQ=16.4;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,0.0081,1,1 GT:PL:GQ 0/1:24,0,51:27 0/1:24,0,51:27
9 1605624 . T G 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,1.4e-07,1,1 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 1607144 . T G 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 1607162 . G C 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 1607329 . T G 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 1607359 . G T 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 1608307 . T C 19 . DP=10;AF1=1;CI95=0.5,1;DP4=2,0,8,0;MQ=12;FQ=-36.4;QCHI2=1;PCHI2=0.872;PC2=3,3;PV4=1,5.3e-09,1,1 GT:PL:GQ 1/1:27,8,0:59 1/1:27,8,0:59
9 1609967 . A G 41 . DP=8;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 1610377 . T G 15.4 . DP=10;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,1.4e-07,1,0.041 GT:PL:GQ 0/1:25,0,81:28 0/1:25,0,81:28
9 1611165 . G T 27.5 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:31,6,0:51 1/1:31,6,0:51
9 1611325 . AAGAGAGAGA AAGAGAGAGAGA 141 . INDEL;DP=14;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-45;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:92,9,0:57 1/1:92,9,0:57
9 1613026 . G A 174 . DP=18;AF1=1;CI95=1,1;DP4=0,0,16,0;MQ=37;FQ=-52.7;QCHI2=0;PCHI2=0.996;PC2=3,3 GT:PL:GQ 1/1:105,24,0:99 1/1:105,24,0:99
9 1614251 . G C 19.1 . DP=40;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 1617227 . T A 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 1669075 . T G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 1675241 . C A 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 1675253 . A G 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 1686495 . T C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 1725157 . T C 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 1974996 . T C 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 1975056 . G A 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 1975127 . G T 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 1975285 . T C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 1978073 . TA T 31.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 1984798 . T C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=23;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 2539463 . T G 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 3097260 . TATG T 19.8 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=19.8;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 3107948 . A C 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.042,1,1 GT:PL:GQ 0/1:22,0,98:25 0/1:22,0,98:25
9 3108531 . A C 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.0069,1,0.038 GT:PL:GQ 0/1:22,0,100:25 0/1:22,0,100:25
9 3108877 . A C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 3108880 . A G 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 3109466 . A C 25.3 . DP=10;AF1=0.4997;CI95=0.5,0.5;DP4=6,0,4,0;MQ=33;FQ=28.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0.0014,0,1 GT:PL:GQ 0/1:30,0,78:33 0/1:30,0,78:33
9 3109721 . G T 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,5.3e-11,1,1 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 3110043 . C CT 19.8 . INDEL;DP=4;AF1=0.5001;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.7;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:31,0,30:30 0/1:31,0,30:30
9 3110382 . C A 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.0037,1,1 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 3110538 . C T 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,4.1e-07,1,0.0022 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 3111211 . G A 140 . DP=14;AF1=1;CI95=1,1;DP4=0,0,12,0;MQ=35;FQ=-46.7;QCHI2=0;PCHI2=0.984;PC2=3,3 GT:PL:GQ 1/1:88,18,0:75 1/1:88,18,0:75
9 3111350 . A C 11.6 . DP=8;AF1=0.4987;CI95=0.5,0.5;DP4=6,0,2,0;MQ=34;FQ=14.4;QCHI2=0;PCHI2=0.99;PC2=3,3;PV4=1,0.11,1,1 GT:PL:GQ 0/1:23,0,73:26 0/1:23,0,73:26
9 3111542 . G T 25.3 . DP=24;AF1=0.4997;CI95=0.5,0.5;DP4=20,0,4,0;MQ=37;FQ=28.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0.00013,1,1 GT:PL:GQ 0/1:30,0,149:33 0/1:30,0,149:33
9 3111820 . A G 8.08 . DP=12;AF1=0.498;CI95=0.5,0.5;DP4=8,0,4,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0.00015,1,1 GT:PL:GQ 0/1:21,0,96:24 0/1:21,0,96:24
9 3112572 . TA T 31.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 3112762 . A C 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 3112963 . CA C 17.8 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=17.8;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:30,0,30:30 0/1:30,0,30:30
9 3113140 . A G 43.3 . DP=8;AF1=0.5008;CI95=0.5,0.5;DP4=2,0,6,0;MQ=37;FQ=18.3;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,6.5e-09,1,1 GT:PL:GQ 0/1:39,0,25:28 0/1:39,0,25:28
9 3114134 . A G 19.3 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=21.7;QCHI2=0;PCHI2=0.995;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:27,0,31:29 0/1:27,0,31:29
9 3114234 . A G 8.08 . DP=4;AF1=0.4982;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:21,0,31:24 0/1:21,0,31:24
9 3114262 . GTTT GTT 6.77 . INDEL;DP=6;AF1=0.499;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=9.28;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:24,0,52:27 0/1:24,0,52:27
9 3114328 . T G 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 3115241 . CA C 17.8 . INDEL;DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.7;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:30,0,31:30 0/1:30,0,31:30
9 3115613 . G C 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 3116926 . A AT 19.8 . INDEL;DP=4;AF1=0.5001;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.7;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:31,0,30:30 0/1:31,0,30:30
9 3117095 . TGGG TGGGG 12 . INDEL;DP=4;AF1=0.5003;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=9.78;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:27,0,25:26 0/1:27,0,25:26
9 3117965 . T G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 3118002 . TGGG TGG 12 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12;QCHI2=0;PCHI2=0.994;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:27,0,27:27 0/1:27,0,27:27
9 3118895 . A G 21.3 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=23.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:28,0,31:29 0/1:28,0,31:29
9 3118992 . T G 27.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=27.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 3119150 . A G 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 3119358 . A C 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.00093,1,1 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 3120290 . G T 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 3120292 . G T 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 3120971 . G T 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 3121226 . G C 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 3121229 . G C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 3121243 . G T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 3122035 . C A 5.03 . DP=6;AF1=0.4968;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,2e-05,1,0.12 GT:PL:GQ 0/1:19,0,59:22 0/1:19,0,59:22
9 3122045 . C A 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,1.7e-05,1,1 GT:PL:GQ 0/1:22,0,100:25 0/1:22,0,100:25
9 3122064 . A C 11.6 . DP=8;AF1=0.4987;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=14.4;QCHI2=0;PCHI2=0.99;PC2=3,3;PV4=1,0.0031,1,1 GT:PL:GQ 0/1:23,0,81:26 0/1:23,0,81:26
9 3122412 . C T 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 3123827 . T C 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,1.7e-05,1,1 GT:PL:GQ 0/1:22,0,100:25 0/1:22,0,100:25
9 3123973 . C CTT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 3125322 . G C 31 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:32,3,0:42 1/1:32,3,0:42
9 3129899 . CA CAA 33.5 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 3132276 . A G 33 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 3142085 . A T 11.6 . DP=4;AF1=0.4989;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=14.4;QCHI2=0;PCHI2=0.989;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:23,0,31:25 0/1:23,0,31:25
9 3142426 . G T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 3143555 . A AAGT 19.8 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=19.8;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 3143643 . A C 302 . DP=204;AF1=1;CI95=1,1;DP4=0,0,154,0;MQ=36;FQ=-204;QCHI2=0;PCHI2=1;PC2=3,3 GT:PL:GQ 1/1:169,232,0:99 1/1:169,232,0:99
9 3143924 . T G 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,6.7e-05,1,1 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 3143942 . T C 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.16,1,0.16 GT:PL:GQ 0/1:22,0,54:25 0/1:22,0,54:25
9 3143950 . A C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 3144867 . A G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 3145958 . G T 3.8 . DP=4;AF1=0.4968;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.63;QCHI2=0;PCHI2=0.979;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:18,0,25:20 0/1:18,0,25:20
9 3146783 . C A 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,4.5e-05,1,0 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 3146923 . T G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 3146928 . G A 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 3146934 . C A 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 3147304 . CAG CAGAG 120 . INDEL;DP=20;AF1=0.5064;CI95=0.5,0.5;DP4=2,0,12,0;MQ=34;FQ=-7.86;QCHI2=0;PCHI2=0.982;PC2=3,3;PV4=1,0.069,0.19,3e-13 GT:PL:GQ 0/1:81,0,16:19 0/1:81,0,16:19
9 3148806 . T G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 3149399 . TCC TC 63.7 . INDEL;DP=6;AF1=0.5005;CI95=0.5,0.5;DP4=2,0,4,0;MQ=37;FQ=14.9;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:53,0,27:30 0/1:53,0,27:30
9 3149402 . A G 7.84 . DP=10;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 3150973 . C T 92.7 . DP=78;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:64,9,0:57 1/1:64,9,0:57
9 3151672 . G GA 211 . INDEL;DP=12;AF1=1;CI95=0.75,1;DP4=0,0,10,0;MQ=37;FQ=-51.2;QCHI2=0;PCHI2=0.97;PC2=3,3 GT:PL:GQ 1/1:127,15,0:78 1/1:127,15,0:78
9 3151734 . A C 8.08 . DP=4;AF1=0.4982;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:21,0,31:24 0/1:21,0,31:24
9 3151739 . A C 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 3151832 . A G 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 3152233 . A C 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 3152235 . A C 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 3153428 . A G 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.0022,1,1 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 3153515 . T C 68.7 . DP=8;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:52,9,0:57 1/1:52,9,0:57
9 3154591 . A C 3.8 . DP=4;AF1=0.4968;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.63;QCHI2=0;PCHI2=0.979;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:18,0,25:20 0/1:18,0,25:20
9 3154626 . T C 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 3155540 . A G 43.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:39,6,0:51 1/1:39,6,0:51
9 3155620 . A G 27.3 . DP=176;AF1=0.4998;CI95=0.5,0.5;DP4=72,0,22,0;MQ=36;FQ=30.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,1e-23,0.0047,0.073 GT:PL:GQ 0/1:31,0,146:34 0/1:31,0,146:34
9 3155753 . G C,T 34.7 . DP=10;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:47,21,12,32,0,29:57 1/1:47,21,12,32,0,29:57
9 3156939 . C A 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 3156949 . A G 29 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 3156957 . A G 8.08 . DP=6;AF1=0.498;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0.14,1,0.00064 GT:PL:GQ 0/1:21,0,54:24 0/1:21,0,54:24
9 3156977 . A G 3.79 . DP=6;AF1=0.496;CI95=0.25,0.5;DP4=4,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0.00014,1,0.049 GT:PL:GQ 0/1:18,0,59:21 0/1:18,0,59:21
9 3157097 . G T 41 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 3157230 . C T 119 . DP=14;AF1=0.5064;CI95=0.5,0.5;DP4=2,0,12,0;MQ=36;FQ=3.25;QCHI2=0;PCHI2=0.982;PC2=3,3;PV4=1,2.4e-05,0.28,1 GT:PL:GQ 0/1:77,0,16:19 0/1:77,0,16:19
9 3157663 . A G 106 . DP=10;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=27;FQ=-40.6;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:71,12,0:63 1/1:71,12,0:63
9 3157731 . G A 17.1 . DP=8;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 3158419 . G A 19.3 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=21.7;QCHI2=0;PCHI2=0.995;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:27,0,31:29 0/1:27,0,31:29
9 3158421 . A C 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 3162033 . T C 17.1 . DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 3162047 . T G 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.0033,1,1 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 3162245 . G T 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.1,1,0.41 GT:PL:GQ 0/1:19,0,77:22 0/1:19,0,77:22
9 3162423 . G A 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 3163068 . T C 138 . DP=14;AF1=1;CI95=0.75,1;DP4=0,0,10,0;MQ=37;FQ=-43.7;QCHI2=0;PCHI2=0.97;PC2=3,3 GT:PL:GQ 1/1:87,15,0:78 1/1:87,15,0:78
9 3163512 . T G 294 . DP=18;AF1=1;CI95=1,1;DP4=0,0,18,0;MQ=37;FQ=-55.7;QCHI2=0;PCHI2=0.998;PC2=3,3 GT:PL:GQ 1/1:165,27,0:99 1/1:165,27,0:99
9 3164259 . CCT C 92 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-41.8;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:67,6,0:51 1/1:67,6,0:51
9 3164719 . T C 110 . DP=14;AF1=1;CI95=0.75,1;DP4=0,0,10,0;MQ=37;FQ=-43.7;QCHI2=0;PCHI2=0.97;PC2=3,3 GT:PL:GQ 1/1:73,15,0:78 1/1:73,15,0:78
9 3164741 . G A 174 . DP=14;AF1=1;CI95=1,1;DP4=0,0,12,0;MQ=37;FQ=-46.7;QCHI2=0;PCHI2=0.984;PC2=3,3 GT:PL:GQ 1/1:105,18,0:75 1/1:105,18,0:75
9 3164763 . A T 3.79 . DP=10;AF1=0.496;CI95=0.25,0.5;DP4=8,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,1.2e-08,1,0.3 GT:PL:GQ 0/1:18,0,100:21 0/1:18,0,100:21
9 3164774 . C T 49.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:42,6,0:51 1/1:42,6,0:51
9 3164818 . G A 29 . DP=8;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 3164892 . A G 84.7 . DP=6;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:60,9,0:57 1/1:60,9,0:57
9 3164951 . A C 102 . DP=12;AF1=1;CI95=0.75,1;DP4=0,0,10,0;MQ=37;FQ=-43.7;QCHI2=0;PCHI2=0.97;PC2=3,3 GT:PL:GQ 1/1:69,15,0:78 1/1:69,15,0:78
9 3165149 . T C 41.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:38,6,0:51 1/1:38,6,0:51
9 3165849 . T C 3.61 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 3165960 . A C 8.08 . DP=10;AF1=0.498;CI95=0.5,0.5;DP4=8,0,2,0;MQ=35;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,1.3e-05,1,0.3 GT:PL:GQ 0/1:21,0,93:24 0/1:21,0,93:24
9 3166109 . T C 7.84 . DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 3166221 . G A 73.2 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=4,0,6,0;MQ=35;FQ=72.1;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,2.1e-08,0.12,1.8e-05 GT:PL:GQ 0/1:54,0,53:53 0/1:54,0,53:53
9 3166694 . C T 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=10,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.054,1,0.19 GT:PL:GQ 0/1:19,0,111:22 0/1:19,0,111:22
9 3167034 . ACC ACCC 137 . INDEL;DP=12;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-45;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:90,9,0:57 1/1:90,9,0:57
9 3167527 . ATTCTTCTTCTT ATTCTTCTT 215 . INDEL;DP=10;AF1=1;CI95=0.75,1;DP4=0,0,10,0;MQ=37;FQ=-51.2;QCHI2=0;PCHI2=0.97;PC2=3,3 GT:PL:GQ 1/1:129,15,0:78 1/1:129,15,0:78
9 3167731 . C A 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=34;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.00018,1,0.012 GT:PL:GQ 0/1:19,0,73:22 0/1:19,0,73:22
9 3167777 . T C 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 3167983 . A G 86.7 . DP=8;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:61,9,0:57 1/1:61,9,0:57
9 3168417 . T G 5.03 . DP=10;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,9.6e-05,1,0.29 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 3168431 . A C 228 . DP=20;AF1=1;CI95=1,1;DP4=0,0,20,0;MQ=36;FQ=-58.7;QCHI2=0;PCHI2=0.999;PC2=3,3 GT:PL:GQ 1/1:132,30,0:99 1/1:132,30,0:99
9 3168802 . T G 37.2 . DP=8;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,4,0;MQ=34;FQ=40.2;QCHI2=0;PCHI2=0.999;PC2=3,3;PV4=1,0.019,0.067,1 GT:PL:GQ 0/1:36,0,51:39 0/1:36,0,51:39
9 3169045 . C T 37.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:36,6,0:51 1/1:36,6,0:51
9 3169771 . G A 84.7 . DP=6;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:60,9,0:57 1/1:60,9,0:57
9 3170210 . ACCCCC ACCCC 114 . INDEL;DP=18;AF1=1;CI95=1,1;DP4=0,0,14,0;MQ=36;FQ=-57.3;QCHI2=0;PCHI2=0.992;PC2=3,3 GT:PL:GQ 1/1:79,21,0:87 1/1:79,21,0:87
9 3170256 . A G 99.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:67,6,0:51 1/1:67,6,0:51
9 3170697 . TC TCAC 159 . INDEL;DP=12;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=37;FQ=-48.2;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:101,12,0:63 1/1:101,12,0:63
9 3171857 . T C 23 . DP=24;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 3171995 . G T 68.2 . DP=12;AF1=1;CI95=0.75,1;DP4=0,0,10,0;MQ=37;FQ=-43.7;QCHI2=0;PCHI2=0.97;PC2=3,3 GT:PL:GQ 1/1:52,15,0:78 1/1:52,15,0:78
9 3172121 . C T 218 . DP=144;AF1=1;CI95=1,1;DP4=0,0,20,0;MQ=37;FQ=-58.7;QCHI2=0;PCHI2=0.999;PC2=3,3 GT:PL:GQ 1/1:127,30,0:99 1/1:127,30,0:99
9 3172229 . G A 107 . DP=6;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:71,9,0:57 1/1:71,9,0:57
9 3172299 . T C 100 . DP=14;AF1=1;CI95=0.75,1;DP4=0,0,10,0;MQ=37;FQ=-43.7;QCHI2=0;PCHI2=0.97;PC2=3,3 GT:PL:GQ 1/1:68,15,0:78 1/1:68,15,0:78
9 3172357 . T C 59.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:47,6,0:51 1/1:47,6,0:51
9 3172421 . A G 11.4 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 3173138 . G T 3.79 . DP=6;AF1=0.496;CI95=0.25,0.5;DP4=4,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0.00057,1,1 GT:PL:GQ 0/1:18,0,59:21 0/1:18,0,59:21
9 3173364 . A G 49.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:42,6,0:51 1/1:42,6,0:51
9 3173581 . A G 138 . DP=14;AF1=1;CI95=1,1;DP4=0,0,14,0;MQ=37;FQ=-49.7;QCHI2=0;PCHI2=0.992;PC2=3,3 GT:PL:GQ 1/1:87,21,0:87 1/1:87,21,0:87
9 3174472 . A C 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 3174565 . CTT CT 9.94 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-38.3;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 3174633 . G GAA 122 . INDEL;DP=22;AF1=0.5;CI95=0.5,0.5;DP4=12,0,8,0;MQ=37;FQ=125;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,0.065,1,9.1e-05 GT:PL:GQ 0/1:82,0,122:85 0/1:82,0,122:85
9 3175024 . T C 39.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:37,6,0:51 1/1:37,6,0:51
9 3175068 . T C 176 . DP=8;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=37;FQ=-40.6;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:106,12,0:63 1/1:106,12,0:63
9 3175088 . G C 35 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 3175104 . CAG CAGAG 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 3175505 . AGG AGGG 85.7 . INDEL;DP=112;AF1=0.5;CI95=0.5,0.5;DP4=10,0,10,0;MQ=32;FQ=88.7;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,0.28,0,0.079 GT:PL:GQ 0/1:64,0,86:67 0/1:64,0,86:67
9 3175763 . T C 92.4 . DP=8;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=33;FQ=-40.6;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:64,12,0:63 1/1:64,12,0:63
9 3176243 . C T 58.4 . DP=16;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=37;FQ=-40.6;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:47,12,0:63 1/1:47,12,0:63
9 3176961 . G T 17.4 . DP=6;AF1=0.4994;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=20.3;QCHI2=0;PCHI2=0.994;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:26,0,59:29 0/1:26,0,59:29
9 3177603 . TCA T 125 . INDEL;DP=8;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=33;FQ=-45;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:84,9,0:57 1/1:84,9,0:57
9 3177636 . CCTG CCTGCTG 92 . INDEL;DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-41.8;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:67,6,0:51 1/1:67,6,0:51
9 3178422 . A G 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=32;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.049,1,0.22 GT:PL:GQ 0/1:22,0,79:25 0/1:22,0,79:25
9 3178442 . C A 56.4 . DP=10;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=30;FQ=-40.6;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:46,12,0:63 1/1:46,12,0:63
9 3178815 . G C 258 . DP=122;AF1=1;CI95=1,1;DP4=0,0,108,0;MQ=37;FQ=-181;QCHI2=0;PCHI2=1;PC2=3,3 GT:PL:GQ 1/1:147,163,0:99 1/1:147,163,0:99
9 3178905 . T A 196 . DP=96;AF1=1;CI95=1,1;DP4=0,0,44,0;MQ=35;FQ=-94.7;QCHI2=0;PCHI2=1;PC2=3,3 GT:PL:GQ 1/1:116,66,0:99 1/1:116,66,0:99
9 3179189 . A G 59.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:47,6,0:51 1/1:47,6,0:51
9 3179703 . C T 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 3180227 . T C 252 . DP=260;AF1=1;CI95=1,1;DP4=0,0,34,0;MQ=36;FQ=-79.7;QCHI2=0;PCHI2=1;PC2=3,3 GT:PL:GQ 1/1:144,51,0:99 1/1:144,51,0:99
9 3180316 . T C 33.5 . DP=34;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:34,6,0:51 1/1:34,6,0:51
9 3180374 . G C 15.4 . DP=8;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,2.6e-05,1,0.45 GT:PL:GQ 0/1:25,0,81:28 0/1:25,0,81:28
9 3180689 . C A 55.5 . DP=40;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=32;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:45,6,0:51 1/1:45,6,0:51
9 3181003 . A G 72.7 . DP=38;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:54,9,0:57 1/1:54,9,0:57
9 3181126 . C T 223 . DP=184;AF1=0.5;CI95=0.5,0.5;DP4=88,0,94,0;MQ=37;FQ=226;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,3.6e-109,0.025,1 GT:PL:GQ 0/1:129,0,165:99 0/1:129,0,165:99
9 3181442 . T C 45.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:40,6,0:51 1/1:40,6,0:51
9 3181909 . G A 68.7 . DP=8;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:52,9,0:57 1/1:52,9,0:57
9 3182460 . T G 5.03 . DP=6;AF1=0.4968;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.0004,1,0.36 GT:PL:GQ 0/1:19,0,59:22 0/1:19,0,59:22
9 3182591 . A G 65.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:50,6,0:51 1/1:50,6,0:51
9 3183094 . T G 13.5 . DP=8;AF1=0.499;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=16.4;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,0.00094,1,1 GT:PL:GQ 0/1:24,0,81:27 0/1:24,0,81:27
9 3183810 . A T 15.4 . DP=8;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0.1,1,1 GT:PL:GQ 0/1:25,0,80:28 0/1:25,0,80:28
9 3184507 . A G 29 . DP=24;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 3184802 . G C 176 . DP=18;AF1=1;CI95=1,1;DP4=0,0,18,0;MQ=35;FQ=-55.7;QCHI2=0;PCHI2=0.998;PC2=3,3 GT:PL:GQ 1/1:106,27,0:99 1/1:106,27,0:99
9 3185798 . T C 60.7 . DP=22;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=30;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:48,9,0:57 1/1:48,9,0:57
9 3186024 . A C 33 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 3186458 . C G 17.1 . DP=30;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 3186671 . T A 19.3 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=21.7;QCHI2=0;PCHI2=0.995;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:27,0,31:29 0/1:27,0,31:29
9 3186857 . C A 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 3187166 . A G 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 3187544 . A T 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.0048,1,0.32 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 3187567 . C T 15.4 . DP=8;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:25,0,75:28 0/1:25,0,75:28
9 3187749 . A G 121 . DP=8;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=33;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:78,9,0:57 1/1:78,9,0:57
9 3187924 . T C 45.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:40,6,0:51 1/1:40,6,0:51
9 3188282 . A T 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 3188319 . C G 121 . DP=6;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:78,9,0:57 1/1:78,9,0:57
9 3188672 . C T 99.2 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=4,0,10,0;MQ=37;FQ=64.2;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,7.7e-11,1,0.14 GT:PL:GQ 0/1:67,0,48:51 0/1:67,0,48:51
9 3189380 . C T 240 . DP=114;AF1=1;CI95=1,1;DP4=0,0,104,0;MQ=36;FQ=-173;QCHI2=0;PCHI2=1;PC2=3,3 GT:PL:GQ 1/1:138,157,0:99 1/1:138,157,0:99
9 3189463 . T G 23.3 . DP=4;AF1=0.5005;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=17.7;QCHI2=0;PCHI2=0.995;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:29,0,25:27 0/1:29,0,25:27
9 3189479 . G T 15.4 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=16.9;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,27:26 0/1:25,0,27:26
9 3189483 . C A 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 3190265 . A G 15.2 . DP=42;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 3190298 . C T 11.8 . DP=36;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.831;PC2=3,3 GT:PL:GQ 1/1:23,6,0:51 1/1:23,6,0:51
9 3191181 . T C 218 . DP=30;AF1=1;CI95=1,1;DP4=0,0,28,0;MQ=36;FQ=-70.7;QCHI2=0;PCHI2=1;PC2=3,3 GT:PL:GQ 1/1:127,42,0:99 1/1:127,42,0:99
9 3191203 . A G 17.1 . DP=32;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 3191951 . A C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 3194291 . A G 13.5 . DP=8;AF1=0.499;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=16.4;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,0.0037,1,1 GT:PL:GQ 0/1:24,0,81:27 0/1:24,0,81:27
9 3194747 . A C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 3194823 . G A 59.5 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:47,6,0:51 1/1:47,6,0:51
9 3195000 . G T 6.47 . DP=10;AF1=0.4975;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=8.93;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,8.2e-06,1,1 GT:PL:GQ 0/1:20,0,100:23 0/1:20,0,100:23
9 3195173 . G C 146 . DP=18;AF1=1;CI95=1,1;DP4=0,0,16,0;MQ=37;FQ=-52.7;QCHI2=0;PCHI2=0.996;PC2=3,3 GT:PL:GQ 1/1:91,24,0:99 1/1:91,24,0:99
9 3195727 . C T 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,1.6e-10,1,0.03 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 3196389 . G A 70.7 . DP=10;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:53,9,0:57 1/1:53,9,0:57
9 3197770 . G C 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 3199119 . TAC T 280 . INDEL;DP=20;AF1=1;CI95=1,1;DP4=0,0,16,0;MQ=37;FQ=-60.3;QCHI2=0;PCHI2=0.996;PC2=3,3 GT:PL:GQ 1/1:162,24,0:99 1/1:162,24,0:99
9 3199120 . A AT 92 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-41.8;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:67,6,0:51 1/1:67,6,0:51
9 3200292 . G A 288 . DP=134;AF1=1;CI95=1,1;DP4=0,0,122,0;MQ=36;FQ=-197;QCHI2=0;PCHI2=1;PC2=3,3 GT:PL:GQ 1/1:162,184,0:99 1/1:162,184,0:99
9 3201097 . T C 50.7 . DP=6;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:43,9,0:57 1/1:43,9,0:57
9 3201499 . C A 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 3201612 . G C 21.3 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=23.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:28,0,31:29 0/1:28,0,31:29
9 3202065 . T C 999 . DP=152;AF1=1;CI95=1,1;DP4=0,0,146,0;MQ=36;FQ=-251;QCHI2=0;PCHI2=1;PC2=3,3 GT:PL:GQ 1/1:220,220,0:99 1/1:220,220,0:99
9 3202140 . C T 134 . DP=8;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=37;FQ=-40.6;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:85,12,0:63 1/1:85,12,0:63
9 3202170 . CGG CGGG 19.8 . INDEL;DP=4;AF1=0.5003;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=14.3;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,27:29 0/1:31,0,27:29
9 3202292 . T G 6.47 . DP=6;AF1=0.4975;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=8.93;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,1.6e-05,1,0.11 GT:PL:GQ 0/1:20,0,59:23 0/1:20,0,59:23
9 3202851 . A G 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.00077,1,0.086 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 3204185 . A AT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 3204682 . A G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 3204765 . A C 27.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=27.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 3204904 . A C 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 3205527 . G A 5.03 . DP=10;AF1=0.4968;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.029,1,1 GT:PL:GQ 0/1:19,0,99:22 0/1:19,0,99:22
9 3205851 . C G 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 3206492 . A C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 3207603 . A G 3.61 . DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 3208557 . A G 41.5 . DP=68;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=32;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:38,6,0:51 1/1:38,6,0:51
9 3209125 . CA C 90 . INDEL;DP=10;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-41.8;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:66,6,0:51 1/1:66,6,0:51
9 3212209 . T A 39 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 3212398 . TC TCC 129 . INDEL;DP=70;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=28;FQ=-48.2;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:86,12,0:63 1/1:86,12,0:63
9 3213110 . A G 55.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:45,6,0:51 1/1:45,6,0:51
9 3213148 . G GA 92 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-41.8;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:67,6,0:51 1/1:67,6,0:51
9 3213381 . A T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 3213991 . A C 37 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:35,3,0:42 1/1:35,3,0:42
9 3214516 . A G 65.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:50,6,0:51 1/1:50,6,0:51
9 3214707 . A C 27 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:30,3,0:42 1/1:30,3,0:42
9 3214709 . T G 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 3283090 . GC G 31.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 3489276 . G T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 3529676 . T G 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 3531740 . A C 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=18;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 3596761 . T C 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 3640346 . A AT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 3686314 . GCC GC 31.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 3748259 . C G 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 3805249 . C A 29 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 3806216 . G A 47.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:41,6,0:51 1/1:41,6,0:51
9 3816855 . C T 27.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=27.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 3818730 . C T 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 3821327 . A T 91.9 . DP=2362;AF1=0.543;CI95=0.5,0.75;DP4=8,0,68,0;MQ=36;FQ=-14.7;QCHI2=0;PCHI2=0.899;PC2=3,3;PV4=1,1.6e-08,0.13,1 GT:PL:GQ 0/1:63,0,8:11 0/1:63,0,8:11
9 3822423 . TGGGG TGGG 63.7 . INDEL;DP=242;AF1=0.5;CI95=0.5,0.5;DP4=84,0,38,0;MQ=36;FQ=66.7;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,0.0034,1.6e-07,4e-17 GT:PL:GQ 0/1:53,0,76:56 0/1:53,0,76:56
9 3822424 . G GT 124 . INDEL;DP=222;AF1=0.5;CI95=0.5,0.5;DP4=86,0,88,0;MQ=36;FQ=124;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,1,0.0006,3.4e-23 GT:PL:GQ 0/1:83,0,83:83 0/1:83,0,83:83
9 3823419 . A G 198 . DP=122;AF1=1;CI95=1,1;DP4=2,0,84,0;MQ=37;FQ=-139;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 1/1:117,111,0:99 1/1:117,111,0:99
9 3824409 . GT GTT 146 . INDEL;DP=370;AF1=1;CI95=1,1;DP4=26,0,178,0;MQ=31;FQ=-72.3;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,0.31,9e-10,6.4e-48 GT:PL:GQ 1/1:95,36,0:99 1/1:95,36,0:99
9 3824411 . GC G 124 . INDEL;DP=272;AF1=0.5;CI95=0.5,0.5;DP4=22,0,12,0;MQ=37;FQ=127;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,0,1,4.5e-14 GT:PL:GQ 0/1:83,0,144:86 0/1:83,0,144:86
9 3827551 . G C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 3827985 . G T 5.03 . DP=10;AF1=0.4968;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,8.4e-07,1,0.083 GT:PL:GQ 0/1:19,0,100:22 0/1:19,0,100:22
9 3828331 . A C 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 3828403 . T C 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,8.2e-05,1,0.06 GT:PL:GQ 0/1:22,0,100:25 0/1:22,0,100:25
9 3833212 . C A 19.1 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 3834485 . A C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 3850554 . C A 39 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 3907392 . C T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 3938131 . TGG TGGG 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 3947021 . C G 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 4124891 . A G 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 4172959 . T G 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 4307303 . CAA CA 27.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 4717679 . T C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 4717722 . T C 5.07 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=25;FQ=5.07;QCHI2=0;PCHI2=0.975;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:19,0,19:19 0/1:19,0,19:19
9 4867662 . A T 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 4868441 . C G 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 4868445 . G C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 4868669 . C G 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,4.3e-05,1,1 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 4869999 . C G 13.5 . DP=6;AF1=0.499;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.4;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,0,1,0.21 GT:PL:GQ 0/1:24,0,59:27 0/1:24,0,59:27
9 4872524 . A G 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 4873352 . G T 27.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=27.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 4873378 . T C 21.3 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=23.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:28,0,31:29 0/1:28,0,31:29
9 4874312 . GT GTT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 4877596 . G C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 4878069 . T TA 13.9 . INDEL;DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.8;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1,1,0.36 GT:PL:GQ 0/1:28,0,57:31 0/1:28,0,57:31
9 4879978 . C T 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 4883717 . A C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 4884054 . G T 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 4887812 . C A 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 4887966 . T A 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 4888222 . C T 51.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:43,6,0:51 1/1:43,6,0:51
9 4888443 . A C 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 4889020 . A C 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 4889123 . G A 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,1.3e-06,1,0.34 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 4889193 . T TC 13.9 . INDEL;DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.8;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1,1,0.16 GT:PL:GQ 0/1:28,0,57:31 0/1:28,0,57:31
9 4890022 . T G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 4890621 . C A 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 4890867 . A C 27 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:30,3,0:42 1/1:30,3,0:42
9 4890879 . C A 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 4893851 . G C 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 4894020 . C G 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 4894164 . C A 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 4894244 . A T 11.6 . DP=8;AF1=0.4987;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=14.4;QCHI2=0;PCHI2=0.99;PC2=3,3;PV4=1,0.0019,1,0.086 GT:PL:GQ 0/1:23,0,81:26 0/1:23,0,81:26
9 4894361 . G GA 19.8 . INDEL;DP=4;AF1=0.5001;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.7;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:31,0,30:30 0/1:31,0,30:30
9 4894375 . G T 5.03 . DP=6;AF1=0.4968;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.00064,1,0.26 GT:PL:GQ 0/1:19,0,59:22 0/1:19,0,59:22
9 4895907 . TA T 31.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 4913979 . G C 15.4 . DP=8;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,4.7e-05,1,0.0021 GT:PL:GQ 0/1:25,0,81:28 0/1:25,0,81:28
9 4913987 . TAA TA 8.41 . INDEL;DP=8;AF1=0.4992;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=11.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,0.3 GT:PL:GQ 0/1:25,0,59:28 0/1:25,0,59:28
9 4914033 . C G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 4914037 . A G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 4914049 . C T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 4915404 . A AT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 4916142 . T C 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 4918182 . A G 37.2 . DP=8;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,4,0;MQ=32;FQ=40.2;QCHI2=0;PCHI2=0.999;PC2=3,3;PV4=1,7.5e-06,1,0.04 GT:PL:GQ 0/1:36,0,46:39 0/1:36,0,46:39
9 4919687 . T A 27.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=27.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 4924907 . A C 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 4925675 . G A 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 4929525 . CTCA C 19.8 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=19.8;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 4929569 . C A 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,1.2e-10,1,0.014 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 4929710 . T G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 4930006 . A G 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 4952029 . C A 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 4952039 . C A 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 4959769 . A C 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 4971784 . G A 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 4975431 . C CT 19.8 . INDEL;DP=4;AF1=0.5001;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.7;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,30:30 0/1:31,0,30:30
9 4975942 . A G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 4987343 . A C 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 4987350 . A G 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 4987751 . C G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 4987757 . A G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 4987759 . A C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 5004043 . T C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 5004248 . TA TAA 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 5006666 . T C 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 5007528 . A C 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=18;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 5016975 . C T 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 5016978 . T A 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 5018815 . C G 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 5024356 . A C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 5024445 . A G 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 5024464 . T G 27.3 . DP=4;AF1=0.5006;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,25:27 0/1:31,0,25:27
9 5024620 . A T 11.6 . DP=4;AF1=0.4989;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=14.4;QCHI2=0;PCHI2=0.989;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:23,0,31:25 0/1:23,0,31:25
9 5025335 . A G 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.11,1,0.27 GT:PL:GQ 0/1:22,0,100:25 0/1:22,0,100:25
9 5030319 . A AT 13.9 . INDEL;DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.8;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1,1,0.013 GT:PL:GQ 0/1:28,0,57:31 0/1:28,0,57:31
9 5030697 . C A 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 5138599 . CAG CAGAG 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 5144401 . TGG TGGG 99.7 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=4,0,6,0;MQ=35;FQ=52.7;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,1,0.12,0.0004 GT:PL:GQ 0/1:71,0,46:49 0/1:71,0,46:49
9 5238717 . T G 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 5255103 . G A 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=20;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 5258807 . G GA 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 5303045 . T C 39 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 5314291 . A T 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 5314480 . G A 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 5314485 . G A 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 5327917 . TG T 17.8 . INDEL;DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.7;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:30,0,31:30 0/1:30,0,31:30
9 5357462 . C G 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 5412658 . A G 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=20;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 5423534 . CA CAA 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 5435571 . C T 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 5436260 . A G 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 5454872 . C CG 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 5471435 . A G 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 5471459 . G A 49.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:42,6,0:51 1/1:42,6,0:51
9 5472433 . G T 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 5477144 . A C 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 5478449 . T G 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 5478463 . T G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 5479804 . A T 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 5481364 . T C 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 5481729 . T G 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 5483244 . A C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 5491616 . T G 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 5491634 . T G 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 5492689 . A G 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 5496544 . G T 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 5498237 . G C 53.5 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=32;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:44,6,0:51 1/1:44,6,0:51
9 5498238 . TAAAA TAAAAA 81.2 . INDEL;DP=10;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=33;FQ=-45;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:62,9,0:57 1/1:62,9,0:57
9 5591272 . CA C 31.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 5680008 . T C 39 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 5681075 . A C 21.3 . DP=24;AF1=0.4996;CI95=0.5,0.5;DP4=18,0,6,0;MQ=35;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,9.3e-16,4.4e-06,1 GT:PL:GQ 0/1:28,0,147:31 0/1:28,0,147:31
9 5681348 . T C 346 . DP=38;AF1=1;CI95=1,1;DP4=0,0,30,0;MQ=37;FQ=-73.7;QCHI2=0;PCHI2=1;PC2=3,3 GT:PL:GQ 1/1:191,45,0:99 1/1:191,45,0:99
9 5682641 . C T 76.7 . DP=30;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=33;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:56,9,0:57 1/1:56,9,0:57
9 5683004 . CTTTT CTTT 9.94 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 5687567 . T C 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 5693173 . CA C 31.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 5693379 . A G 17.1 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 5693574 . T G 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 5694824 . A C 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 5694836 . G C 5.03 . DP=6;AF1=0.4968;CI95=0.5,0.5;DP4=4,0,2,0;MQ=33;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,5e-06,1,0.11 GT:PL:GQ 0/1:19,0,49:22 0/1:19,0,49:22
9 5695366 . C A 31 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:32,3,0:42 1/1:32,3,0:42
9 5696494 . A T 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 5696530 . T C 35 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 5700826 . T C 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 5701146 . TCCCC TCCC 9.94 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 5702454 . T C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 5702467 . G A 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 5703113 . C T 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 5703120 . A T 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 5705661 . T G 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 5706047 . A C 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 5708544 . T C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 5723544 . C A 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 5723553 . C A 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 5723852 . T G 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,1.1e-07,1,1 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 5724356 . A C 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 5724365 . A C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 5725019 . G T 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 5725966 . TTAT TT 8.41 . INDEL;DP=8;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=11.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,0.48 GT:PL:GQ 0/1:25,0,81:28 0/1:25,0,81:28
9 5726333 . AC ACC 19.8 . INDEL;DP=6;AF1=0.5002;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=15.9;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:31,0,28:29 0/1:31,0,28:29
9 5726423 . A G 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=10,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.05,1,0.29 GT:PL:GQ 0/1:19,0,111:22 0/1:19,0,111:22
9 5726614 . C A 15.4 . DP=8;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0.02,1,1 GT:PL:GQ 0/1:25,0,81:28 0/1:25,0,81:28
9 5726837 . G A 98.7 . DP=60;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:67,9,0:57 1/1:67,9,0:57
9 5730262 . A G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 5730265 . A G 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 5730700 . G A 5.03 . DP=10;AF1=0.4968;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.14,1,0.16 GT:PL:GQ 0/1:19,0,52:22 0/1:19,0,52:22
9 5732403 . G C 15.4 . DP=8;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0.24,1,1 GT:PL:GQ 0/1:25,0,81:28 0/1:25,0,81:28
9 5732838 . T G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 5732840 . T C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 5733059 . TGGGGG TGGG 30 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=20;FQ=-41.8;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:36,6,0:51 1/1:36,6,0:51
9 5733460 . G C 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 5734491 . GCCC GCC 25.5 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 5734617 . T A 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 5734869 . A C 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 5734883 . T G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 5734913 . T G 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 5735192 . C G 9.81 . DP=6;AF1=0.4992;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=11.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:22,0,25:23 0/1:22,0,25:23
9 5735196 . C A 15.4 . DP=4;AF1=0.4995;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=17.9;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,30:27 0/1:25,0,30:27
9 5735210 . A C 11.6 . DP=8;AF1=0.4987;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=14.4;QCHI2=0;PCHI2=0.99;PC2=3,3;PV4=1,0.087,1,1 GT:PL:GQ 0/1:23,0,80:26 0/1:23,0,80:26
9 5735648 . C T 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 5737835 . A G 8.08 . DP=4;AF1=0.4982;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:21,0,31:24 0/1:21,0,31:24
9 5739255 . CCTT CCTTCTT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 5739506 . A C 11.6 . DP=8;AF1=0.4987;CI95=0.5,0.5;DP4=6,0,2,0;MQ=34;FQ=14.4;QCHI2=0;PCHI2=0.99;PC2=3,3;PV4=1,0.00042,1,1 GT:PL:GQ 0/1:23,0,73:26 0/1:23,0,73:26
9 5740117 . T G 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 5740313 . G A 19.3 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=21.7;QCHI2=0;PCHI2=0.995;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:27,0,31:29 0/1:27,0,31:29
9 5740808 . G T 3.79 . DP=6;AF1=0.496;CI95=0.25,0.5;DP4=4,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0.013,1,0.16 GT:PL:GQ 0/1:18,0,59:21 0/1:18,0,59:21
9 5741295 . T G 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=32;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 5741774 . A C 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 5742067 . T C 11.4 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 5742128 . CCACA CCA 8.41 . INDEL;DP=12;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=11.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,81:28 0/1:25,0,81:28
9 5742491 . G A 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 5742757 . CTGTGTGTGTGTGTGTGTGTGT CTGTGTGTGTGTGTGTGTGTGTGT 6.57 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=23;FQ=-38.3;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 5743963 . TAAAA TAA 19.8 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=19.8;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 5744023 . T TC 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 5747161 . G T 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 5748052 . G A 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 5749718 . CA C 6.77 . INDEL;DP=8;AF1=0.499;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=9.28;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,0.26,1,0.38 GT:PL:GQ 0/1:24,0,78:27 0/1:24,0,78:27
9 5749902 . ACCC ACC 12 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12;QCHI2=0;PCHI2=0.994;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:27,0,27:27 0/1:27,0,27:27
9 5750269 . A G 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 5750739 . A G 47.2 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=6,0,4,0;MQ=37;FQ=50.2;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,2.1e-06,1,0.2 GT:PL:GQ 0/1:41,0,79:44 0/1:41,0,79:44
9 5750839 . A G 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 5750862 . A G 45.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:40,6,0:51 1/1:40,6,0:51
9 5751976 . T G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 5753523 . T TC 33.5 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 5754620 . C CT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 5754645 . A G 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 5755900 . A C 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 5756172 . T C 21.3 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=23.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:28,0,31:29 0/1:28,0,31:29
9 5756780 . G A 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 5756810 . T G 5.03 . DP=6;AF1=0.4968;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,3.3e-05,1,1 GT:PL:GQ 0/1:19,0,59:22 0/1:19,0,59:22
9 5757604 . TGG TG 27.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 5757878 . A G 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=23;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 5757882 . G T 6.54 . DP=4;AF1=0.5025;CI95=0.5,0.5;DP4=2,0,2,0;MQ=31;FQ=3.84;QCHI2=0;PCHI2=0.972;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:20,0,17:18 0/1:20,0,17:18
9 5758125 . C T 113 . DP=6;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:74,9,0:57 1/1:74,9,0:57
9 5759291 . T A 8.08 . DP=8;AF1=0.498;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,6.9e-06,1,0.076 GT:PL:GQ 0/1:21,0,81:24 0/1:21,0,81:24
9 5759748 . T G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 5760720 . G T 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 5761001 . GA GAA 13.9 . INDEL;DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.8;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1,1,1.8e-06 GT:PL:GQ 0/1:28,0,53:31 0/1:28,0,53:31
9 5761590 . C A 3.79 . DP=6;AF1=0.496;CI95=0.25,0.5;DP4=4,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0.092,1,1 GT:PL:GQ 0/1:18,0,56:21 0/1:18,0,56:21
9 5762405 . C G 64.7 . DP=8;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=33;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:50,9,0:57 1/1:50,9,0:57
9 5763846 . C A 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 5764160 . G A 65.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:50,6,0:51 1/1:50,6,0:51
9 5764163 . A G 13.5 . DP=4;AF1=0.4992;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=16.2;QCHI2=0;PCHI2=0.991;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:24,0,31:26 0/1:24,0,31:26
9 5764832 . A G 37.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=29;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:36,6,0:51 1/1:36,6,0:51
9 5766900 . C A 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 5767505 . G GA 19.8 . INDEL;DP=6;AF1=0.5001;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.7;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,30:30 0/1:31,0,30:30
9 5767844 . T G 9.8 . DP=8;AF1=0.4984;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,8.4e-05,1,0.23 GT:PL:GQ 0/1:22,0,81:25 0/1:22,0,81:25
9 5768920 . G GA 137 . INDEL;DP=10;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-45;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:90,9,0:57 1/1:90,9,0:57
9 5769314 . C T 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 5769978 . C A 27 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:30,3,0:42 1/1:30,3,0:42
9 5781628 . T G 4.83 . DP=48;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 5781969 . A T 184 . DP=42;AF1=1;CI95=1,1;DP4=2,0,34,0;MQ=37;FQ=-52.7;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.014,1,1 GT:PL:GQ 1/1:110,24,0:99 1/1:110,24,0:99
9 5788608 . G C 35.5 . DP=24;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=25;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:35,6,0:51 1/1:35,6,0:51
9 5790420 . T C 202 . DP=58;AF1=1;CI95=1,1;DP4=0,0,46,0;MQ=37;FQ=-94.7;QCHI2=0;PCHI2=1;PC2=3,3 GT:PL:GQ 1/1:119,66,0:99 1/1:119,66,0:99
9 5793158 . G T 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 5794241 . T A 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 5797820 . T G 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 5801033 . G T 15.4 . DP=8;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0.0046,1,1 GT:PL:GQ 0/1:25,0,81:28 0/1:25,0,81:28
9 5801192 . G T 11.6 . DP=4;AF1=0.4989;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=14.4;QCHI2=0;PCHI2=0.989;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:23,0,31:25 0/1:23,0,31:25
9 5802302 . C T 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.067,1,0.45 GT:PL:GQ 0/1:19,0,79:22 0/1:19,0,79:22
9 5803472 . A G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 5803832 . A G 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 5804182 . AAC A 13.9 . INDEL;DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.8;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 5805373 . GCTCT GCT 266 . INDEL;DP=20;AF1=1;CI95=1,1;DP4=0,0,16,0;MQ=34;FQ=-60.3;QCHI2=0;PCHI2=0.996;PC2=3,3 GT:PL:GQ 1/1:155,24,0:99 1/1:155,24,0:99
9 5806248 . C T 225 . DP=118;AF1=0.5;CI95=0.5,0.5;DP4=56,0,56,0;MQ=37;FQ=228;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,1.8e-31,1,1 GT:PL:GQ 0/1:130,0,162:99 0/1:130,0,162:99
9 5807521 . T C 163 . DP=816;AF1=0.5;CI95=0.5,0.5;DP4=340,0,438,0;MQ=32;FQ=166;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,0,8.3e-07,1 GT:PL:GQ 0/1:98,0,170:99 0/1:100,0,186:99
9 5808454 . CA CAAA 220 . INDEL;DP=36;AF1=0.5;CI95=0.5,0.5;DP4=10,0,14,0;MQ=37;FQ=167;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,1,1,1e-05 GT:PL:GQ 0/1:131,0,103:99 0/1:131,0,103:99
9 5810154 . T G 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.0061,1,0.13 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 5810379 . C A 3.79 . DP=10;AF1=0.496;CI95=0.25,0.5;DP4=8,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,5.8e-13,1,1 GT:PL:GQ 0/1:18,0,100:21 0/1:18,0,100:21
9 5811168 . C A 19.3 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=21.7;QCHI2=0;PCHI2=0.995;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:27,0,31:29 0/1:27,0,31:29
9 5811531 . T C 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 5814190 . T A 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,2.5e-08,1,1 GT:PL:GQ 0/1:22,0,100:25 0/1:22,0,100:25
9 5814601 . T G 5.03 . DP=6;AF1=0.4968;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,2.2e-05,1,0 GT:PL:GQ 0/1:19,0,59:22 0/1:19,0,59:22
9 5816795 . G T 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,3e-07,1,1 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 5818416 . A G 11.6 . DP=10;AF1=0.4987;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=14.4;QCHI2=0;PCHI2=0.99;PC2=3,3;PV4=1,3.6e-06,1,1 GT:PL:GQ 0/1:23,0,81:26 0/1:23,0,81:26
9 5818647 . T G 5.03 . DP=6;AF1=0.4968;CI95=0.5,0.5;DP4=4,0,2,0;MQ=32;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:19,0,45:22 0/1:19,0,45:22
9 5818655 . GCC GCCC 15.8 . INDEL;DP=8;AF1=0.5009;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.37;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:29,0,23:25 0/1:29,0,23:25
9 5818836 . CA CAA 13.9 . INDEL;DP=6;AF1=0.4997;CI95=0.5,0.5;DP4=4,0,2,0;MQ=28;FQ=16.4;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:28,0,33:30 0/1:28,0,33:30
9 5819552 . CG C 12 . INDEL;DP=6;AF1=0.4995;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=14.9;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.41,1,0.23 GT:PL:GQ 0/1:27,0,55:30 0/1:27,0,55:30
9 5821717 . T C 160 . DP=12;AF1=1;CI95=0.75,1;DP4=0,0,10,0;MQ=35;FQ=-43.7;QCHI2=0;PCHI2=0.97;PC2=3,3 GT:PL:GQ 1/1:98,15,0:78 1/1:98,15,0:78
9 5821953 . A G 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,6.9e-05,1,0.00067 GT:PL:GQ 0/1:22,0,100:25 0/1:22,0,100:25
9 5822002 . A G 15.4 . DP=8;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0.3,1,0.024 GT:PL:GQ 0/1:25,0,81:28 0/1:25,0,81:28
9 5822145 . A G 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=31;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.0043,1,1 GT:PL:GQ 0/1:22,0,40:25 0/1:22,0,40:25
9 5822615 . C A 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 5822627 . C A 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 5822817 . T A 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 5823631 . G T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 5825388 . A C 3.79 . DP=12;AF1=0.496;CI95=0.25,0.5;DP4=10,0,2,0;MQ=35;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0.019,1,1 GT:PL:GQ 0/1:18,0,107:21 0/1:18,0,107:21
9 5826138 . T A 37 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:35,3,0:42 1/1:35,3,0:42
9 5826155 . TTCT TT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 5826447 . G T 11.6 . DP=8;AF1=0.4987;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=14.4;QCHI2=0;PCHI2=0.99;PC2=3,3;PV4=1,8.3e-07,1,0.12 GT:PL:GQ 0/1:23,0,81:26 0/1:23,0,81:26
9 5827490 . A C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 5833173 . A C 3.31 . DP=4;AF1=0.5669;CI95=0.5,0.75;DP4=2,0,2,0;MQ=27;FQ=-18;QCHI2=0;PCHI2=0.907;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:17,0,6:8 0/1:17,0,6:8
9 5843865 . T G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 5844279 . C G 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 5844991 . G T 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.00013,1,1 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 5846441 . A G 8.08 . DP=12;AF1=0.498;CI95=0.5,0.5;DP4=8,0,4,0;MQ=33;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0.00067,1,1 GT:PL:GQ 0/1:21,0,81:24 0/1:21,0,81:24
9 5847059 . T A 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 5848789 . T G 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 5850888 . T G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 5851856 . T G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 5852804 . G T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 5852882 . A C 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 5854845 . A C 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=10,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.055,1,1 GT:PL:GQ 0/1:19,0,111:22 0/1:19,0,111:22
9 5856871 . A G 65.2 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=4,0,4,0;MQ=33;FQ=46.2;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,0.066,1,1 GT:PL:GQ 0/1:50,0,39:42 0/1:50,0,39:42
9 5857893 . G T 100 . DP=8;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=29;FQ=-40.6;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:68,12,0:63 1/1:68,12,0:63
9 5881486 . C A 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 5881488 . A G 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 5888337 . T C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 5894437 . A C 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 5901023 . A C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 5901707 . C T 51.2 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=4,0,4,0;MQ=37;FQ=54.2;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,0.0006,1,1 GT:PL:GQ 0/1:43,0,56:46 0/1:43,0,56:46
9 5901995 . T G 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 5902016 . T G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 5902642 . A C 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 5903279 . T C 3.98 . DP=6;AF1=0.95;CI95=0.5,1;DP4=4,0,2,0;MQ=21;FQ=-26.9;QCHI2=1;PCHI2=0.826;PC2=3,3;PV4=1,0.00014,1,0.16 GT:PL:GQ 1/1:16,0,0:10 1/1:16,0,0:10
9 5903504 . C T 81.2 . DP=46;AF1=0.5;CI95=0.5,0.5;DP4=24,0,20,0;MQ=37;FQ=84.2;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,2.1e-34,0.059,1 GT:PL:GQ 0/1:58,0,155:61 0/1:58,0,155:61
9 5903853 . A C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 5905082 . G T 5.04 . DP=4;AF1=0.4971;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.24;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:19,0,30:22 0/1:19,0,30:22
9 5907509 . TAA TAAA 31.5 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 5908159 . A C 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 5908370 . A C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=23;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 5910415 . G C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=23;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 5910429 . T G 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 5910439 . G T 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 5910588 . G C 5.09 . DP=4;AF1=0.5019;CI95=0.5,0.5;DP4=2,0,2,0;MQ=24;FQ=3.58;QCHI2=0;PCHI2=0.972;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:19,0,17:18 0/1:19,0,17:18
9 5911064 . T C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 5911073 . T C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 5911080 . G C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 5912366 . G A 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.26,1,1 GT:PL:GQ 0/1:28,0,54:31 0/1:28,0,54:31
9 5912879 . AGG AG 3.99 . INDEL;DP=8;AF1=0.4984;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=6.01;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.24,1,0.22 GT:PL:GQ 0/1:22,0,77:25 0/1:22,0,77:25
9 5913701 . A C 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 5914355 . T C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 5914380 . T C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 5914385 . T C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 5914453 . T C 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 5914648 . T C 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 5914934 . T C 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 5914944 . T C 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 5916267 . C A 6.47 . DP=6;AF1=0.4975;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=8.93;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0.00043,1,1 GT:PL:GQ 0/1:20,0,59:23 0/1:20,0,59:23
9 5916355 . C T 27.3 . DP=4;AF1=0.503;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.989;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:31,0,19:22 0/1:31,0,19:22
9 5916407 . G C 3.79 . DP=6;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 5916413 . A G 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,1.1e-05,1,0.013 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 5916423 . AGG AG 13.9 . INDEL;DP=6;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=15.9;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:28,0,31:29 0/1:28,0,31:29
9 5916837 . C T 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=34;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.00028,1,1 GT:PL:GQ 0/1:19,0,73:22 0/1:19,0,73:22
9 5916926 . C G 29.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:32,6,0:51 1/1:32,6,0:51
9 5917064 . G A 122 . DP=12;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=37;FQ=-40.6;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:79,12,0:63 1/1:79,12,0:63
9 5917214 . C A 5.03 . DP=6;AF1=0.4968;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,6.7e-06,1,1 GT:PL:GQ 0/1:19,0,59:22 0/1:19,0,59:22
9 5918545 . T C 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 5918647 . C T 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.0033,1,1 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 5918732 . T C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 5919859 . C T 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 5919947 . C T 99.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:67,6,0:51 1/1:67,6,0:51
9 5920121 . T C 122 . DP=126;AF1=1;CI95=0.75,1;DP4=0,0,10,0;MQ=33;FQ=-43.7;QCHI2=0;PCHI2=0.97;PC2=3,3 GT:PL:GQ 1/1:79,15,0:78 1/1:79,15,0:78
9 5920816 . T C 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 5922944 . T A 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 5922959 . A C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 5923670 . TG T 17.8 . INDEL;DP=4;AF1=0.5004;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.4;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:30,0,26:28 0/1:30,0,26:28
9 5924602 . T G 8.08 . DP=4;AF1=0.4982;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:21,0,31:24 0/1:21,0,31:24
9 5925029 . G A 191 . DP=286;AF1=0.5;CI95=0.5,0.5;DP4=148,0,124,0;MQ=37;FQ=194;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,7e-115,1,1 GT:PL:GQ 0/1:113,0,180:99 0/1:113,0,180:99
9 5925971 . C A 76.4 . DP=182;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=37;FQ=-40.6;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:56,12,0:63 1/1:56,12,0:63
9 5926131 . G A 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 5926154 . A G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 5932187 . C A 88.7 . DP=8;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:62,9,0:57 1/1:62,9,0:57
9 5932200 . C A 113 . DP=10;AF1=0.5016;CI95=0.5,0.5;DP4=2,0,8,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.995;PC2=3,3;PV4=1,0.00011,1,0.2 GT:PL:GQ 0/1:74,0,22:25 0/1:74,0,22:25
9 5932475 . T C 23 . DP=16;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 5932491 . G A 15.4 . DP=10;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 5934038 . G GA 266 . INDEL;DP=24;AF1=1;CI95=1,1;DP4=0,0,22,0;MQ=37;FQ=-69.3;QCHI2=0;PCHI2=0.999;PC2=3,3 GT:PL:GQ 1/1:155,33,0:99 1/1:155,33,0:99
9 5935437 . C T 19.1 . DP=30;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 5937094 . A G 107 . DP=56;AF1=0.5;CI95=0.5,0.5;DP4=34,0,22,0;MQ=37;FQ=110;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,7.2e-25,1,0.00056 GT:PL:GQ 0/1:71,0,164:74 0/1:71,0,164:74
9 5937707 . G A 9.8 . DP=8;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.0019,1,1 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 5937902 . A G 6.47 . DP=10;AF1=0.4975;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=8.93;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,1.9e-08,1,1 GT:PL:GQ 0/1:20,0,100:23 0/1:20,0,100:23
9 5940428 . CA CAA 13.9 . INDEL;DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.8;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:28,0,53:31 0/1:28,0,53:31
9 5940718 . A C 17.4 . DP=28;AF1=0.4994;CI95=0.5,0.5;DP4=16,0,6,0;MQ=37;FQ=20.3;QCHI2=0;PCHI2=0.994;PC2=3,3;PV4=1,3.9e-12,1,0.033 GT:PL:GQ 0/1:26,0,141:29 0/1:26,0,141:29
9 5940738 . A G 23.3 . DP=20;AF1=0.4997;CI95=0.5,0.5;DP4=12,0,6,0;MQ=37;FQ=26.3;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,1.5e-15,1,1 GT:PL:GQ 0/1:29,0,123:32 0/1:29,0,123:32
9 5941292 . G A 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 5941308 . AT ATCT 8.41 . INDEL;DP=8;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=11.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,1,1,0.14 GT:PL:GQ 0/1:25,0,63:28 0/1:25,0,63:28
9 5941458 . C CT 5.45 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-41.7;QCHI2=1;PCHI2=0.831;PC2=3,3 GT:PL:GQ 1/1:23,6,0:51 1/1:23,6,0:51
9 5941551 . T C 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=33;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,1.8e-05,1,1 GT:PL:GQ 0/1:22,0,84:25 0/1:22,0,84:25
9 5941953 . A G 91.2 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=14,0,10,0;MQ=37;FQ=94.2;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,1.6e-06,1,1 GT:PL:GQ 0/1:63,0,127:66 0/1:63,0,127:66
9 5943725 . A G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 5943728 . A G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 5944510 . A G 29 . DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 5944981 . AG A 89.7 . INDEL;DP=18;AF1=0.5;CI95=0.5,0.5;DP4=12,0,6,0;MQ=36;FQ=92.7;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,0.39,1,0.00025 GT:PL:GQ 0/1:66,0,114:69 0/1:66,0,114:69
9 5945198 . T G 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,7.4e-07,1,0.064 GT:PL:GQ 0/1:22,0,100:25 0/1:22,0,100:25
9 5946502 . T G 5.03 . DP=6;AF1=0.4968;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,9.3e-05,1,1 GT:PL:GQ 0/1:19,0,59:22 0/1:19,0,59:22
9 5951119 . CA C 209 . INDEL;DP=10;AF1=1;CI95=0.75,1;DP4=0,0,10,0;MQ=37;FQ=-51.2;QCHI2=0;PCHI2=0.97;PC2=3,3 GT:PL:GQ 1/1:126,15,0:78 1/1:126,15,0:78
9 5951821 . G C 58.7 . DP=12;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:47,9,0:57 1/1:47,9,0:57
9 5951980 . C G 8.08 . DP=8;AF1=0.498;CI95=0.5,0.5;DP4=6,0,2,0;MQ=31;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0.084,1,0.033 GT:PL:GQ 0/1:21,0,62:24 0/1:21,0,62:24
9 5953092 . G GA 116 . INDEL;DP=28;AF1=0.5;CI95=0.5,0.5;DP4=6,0,8,0;MQ=34;FQ=96.7;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,0.28,0.021,0.056 GT:PL:GQ 0/1:79,0,68:71 0/1:79,0,68:71
9 5953227 . T C 8.08 . DP=4;AF1=0.4982;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:21,0,31:24 0/1:21,0,31:24
9 5955038 . C G 29 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 5955046 . A C 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 5955325 . AC A 90 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-41.8;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:66,6,0:51 1/1:66,6,0:51
9 5955350 . C G 3.79 . DP=6;AF1=0.496;CI95=0.25,0.5;DP4=4,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0.00036,1,1 GT:PL:GQ 0/1:18,0,59:21 0/1:18,0,59:21
9 5957602 . C T 261 . DP=68;AF1=0.5;CI95=0.5,0.5;DP4=34,0,30,0;MQ=37;FQ=264;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,8.6e-13,1,1 GT:PL:GQ 0/1:148,0,162:99 0/1:148,0,162:99
9 5958072 . A G 97.2 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=10,0,10,0;MQ=37;FQ=100;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,7.6e-13,1,0.43 GT:PL:GQ 0/1:66,0,107:69 0/1:66,0,107:69
9 5958781 . T C 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 5959471 . G GC 178 . INDEL;DP=86;AF1=1;CI95=1,1;DP4=0,0,18,0;MQ=25;FQ=-63.3;QCHI2=0;PCHI2=0.998;PC2=3,3 GT:PL:GQ 1/1:111,27,0:99 1/1:111,27,0:99
9 5959641 . T A 13.5 . DP=12;AF1=0.499;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.4;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,0.00084,1,0.0022 GT:PL:GQ 0/1:24,0,59:27 0/1:24,0,59:27
9 5960620 . T G 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 5961300 . T G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 5962757 . GAA GA 13.9 . INDEL;DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=15.9;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:28,0,31:29 0/1:28,0,31:29
9 5962868 . G T 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 5963207 . CTT CT 27.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 5963596 . GAAA GA 3.99 . INDEL;DP=16;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=6.01;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:22,0,100:25 0/1:22,0,100:25
9 5963880 . A G 7.84 . DP=18;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 5966192 . A G 49.5 . DP=46;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:42,6,0:51 1/1:42,6,0:51
9 5966471 . G GA 97.7 . INDEL;DP=46;AF1=0.5;CI95=0.5,0.5;DP4=20,0,16,0;MQ=36;FQ=101;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,0.00047,0.0085,0.0025 GT:PL:GQ 0/1:70,0,143:73 0/1:70,0,143:73
9 5967006 . T C 3.61 . DP=22;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 5967455 . G GA 95.7 . INDEL;DP=40;AF1=0.5;CI95=0.5,0.5;DP4=16,0,14,0;MQ=36;FQ=98.7;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,0.00072,0.063,0.00041 GT:PL:GQ 0/1:69,0,132:72 0/1:69,0,132:72
9 5967660 . T C 13.5 . DP=8;AF1=0.499;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=16.4;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,0.001,1,0.057 GT:PL:GQ 0/1:24,0,81:27 0/1:24,0,81:27
9 5969337 . A C 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,1.6e-10,1,1 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 5969504 . GG GGAG 93.7 . INDEL;DP=36;AF1=0.5;CI95=0.5,0.5;DP4=6,0,6,0;MQ=35;FQ=96.6;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,0.4,0.072,2.7e-11 GT:PL:GQ 0/1:68,0,77:70 0/1:68,0,77:70
9 5970827 . T C 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,4.1e-06,1,0.16 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 5972130 . A G 88.7 . DP=6;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:62,9,0:57 1/1:62,9,0:57
9 5972365 . G A 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 5973087 . ATGTTGT ATGT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 5973985 . C T 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=17;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 5974732 . A C 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=34;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,4e-06,1,0.024 GT:PL:GQ 0/1:19,0,73:22 0/1:19,0,73:22
9 5975745 . A G 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 5976115 . A C 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 5976380 . A G 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 5978702 . T G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 5979068 . CA C 53.7 . INDEL;DP=8;AF1=0.5004;CI95=0.5,0.5;DP4=2,0,4,0;MQ=33;FQ=16.8;QCHI2=0;PCHI2=0.999;PC2=3,3;PV4=1,0.022,0.16,0.00024 GT:PL:GQ 0/1:48,0,28:31 0/1:48,0,28:31
9 5979072 . G T 3.79 . DP=24;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=32;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 5982802 . A C 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 5985691 . T G 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 5986301 . C A 3.82 . DP=4;AF1=0.4992;CI95=0.25,0.5;DP4=2,0,2,0;MQ=32;FQ=4.35;QCHI2=0;PCHI2=0.975;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:18,0,19:19 0/1:18,0,19:19
9 5986850 . C A 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 5986853 . A C 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 5991607 . G C 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 5992982 . T C 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 5998984 . A T 8.08 . DP=6;AF1=0.498;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0.00021,1,1 GT:PL:GQ 0/1:21,0,59:24 0/1:21,0,59:24
9 5999455 . T G 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=18;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 6001016 . A G 127 . DP=10;AF1=0.5008;CI95=0.5,0.5;DP4=2,0,6,0;MQ=37;FQ=18.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,8.1e-06,1,1 GT:PL:GQ 0/1:81,0,25:28 0/1:81,0,25:28
9 6001409 . A G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 6001751 . TG TGG 33.5 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6003466 . C G 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 6003884 . A C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6003890 . A C 17.1 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6005184 . C A 33 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 6005749 . T G 8.08 . DP=4;AF1=0.4982;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:21,0,31:24 0/1:21,0,31:24
9 6008245 . T C 8.08 . DP=8;AF1=0.498;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,2.9e-05,1,1 GT:PL:GQ 0/1:21,0,81:24 0/1:21,0,81:24
9 6008275 . A C 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 6008397 . T G 25.3 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=26.1;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:30,0,31:30 0/1:30,0,31:30
9 6009765 . T C 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 6010031 . G T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6010733 . T C 6.47 . DP=12;AF1=0.4975;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=8.93;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0.0064,1,1 GT:PL:GQ 0/1:20,0,100:23 0/1:20,0,100:23
9 6013354 . C A 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6014203 . T C 41 . DP=8;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6014460 . C G 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 6015441 . T G 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 6017380 . AT ATCTT 3.99 . INDEL;DP=12;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=6.01;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,1,1,0.0073 GT:PL:GQ 0/1:22,0,100:25 0/1:22,0,100:25
9 6017575 . C G 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 6017976 . G A 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 6018784 . TG T 31.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 6018882 . A G 15.4 . DP=8;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=34;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0.15,1,1 GT:PL:GQ 0/1:25,0,72:28 0/1:25,0,72:28
9 6018970 . A G 81.2 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=12,0,8,0;MQ=37;FQ=84.2;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,5.8e-13,1,1 GT:PL:GQ 0/1:58,0,122:61 0/1:58,0,122:61
9 6019015 . C G 13.5 . DP=22;AF1=0.499;CI95=0.5,0.5;DP4=8,0,4,0;MQ=37;FQ=16.4;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,0.0014,1,1 GT:PL:GQ 0/1:24,0,94:27 0/1:24,0,94:27
9 6019248 . C T 6.47 . DP=14;AF1=0.4975;CI95=0.5,0.5;DP4=4,0,4,0;MQ=37;FQ=8.93;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0.0019,1,1 GT:PL:GQ 0/1:20,0,55:23 0/1:20,0,55:23
9 6019431 . A C 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.072,1,0.35 GT:PL:GQ 0/1:19,0,77:22 0/1:19,0,77:22
9 6019955 . C G 59.5 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:47,6,0:51 1/1:47,6,0:51
9 6020155 . T G 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.037,1,0.18 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 6021064 . C G 39.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:37,6,0:51 1/1:37,6,0:51
9 6021627 . G T 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.033,1,0.32 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 6053374 . A G 65.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:50,6,0:51 1/1:50,6,0:51
9 6053791 . A C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 6054683 . C A 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 6056284 . G T 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 6059146 . T A 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 6076319 . A G 23.3 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=24.8;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:29,0,31:30 0/1:29,0,31:30
9 6076668 . CTTTT CTT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6077835 . A G 19.3 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=21.7;QCHI2=0;PCHI2=0.995;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:27,0,31:29 0/1:27,0,31:29
9 6078452 . G A 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6078462 . G T 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 6084958 . T G 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 6101537 . C A 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 6104248 . A G 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.0039,1,1 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 6111090 . A C 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 6131261 . G T 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=8,0,2,0;MQ=35;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,4.6e-05,1,1 GT:PL:GQ 0/1:19,0,93:22 0/1:19,0,93:22
9 6131366 . G C 39.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:37,6,0:51 1/1:37,6,0:51
9 6131411 . TTCCTCCTCCTCCTCCTC TTCCTCCTCCTCCTCCTCCTC 13.9 . INDEL;DP=10;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.8;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 6132191 . G T 3.79 . DP=12;AF1=0.496;CI95=0.25,0.5;DP4=10,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,6.1e-13,1,0.25 GT:PL:GQ 0/1:18,0,114:21 0/1:18,0,114:21
9 6132207 . G T 3.79 . DP=12;AF1=0.496;CI95=0.25,0.5;DP4=10,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0.00017,1,1 GT:PL:GQ 0/1:18,0,114:21 0/1:18,0,114:21
9 6132886 . C A 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=10,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.079,1,1 GT:PL:GQ 0/1:19,0,111:22 0/1:19,0,111:22
9 6132916 . A G 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 6133321 . C A 19.3 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=21.7;QCHI2=0;PCHI2=0.995;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:27,0,31:29 0/1:27,0,31:29
9 6133371 . T C 6.48 . DP=6;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.9;QCHI2=0;PCHI2=0.982;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:20,0,30:23 0/1:20,0,30:23
9 6134867 . G C 43.2 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=6,0,4,0;MQ=37;FQ=46.2;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,0.006,1,0.32 GT:PL:GQ 0/1:39,0,78:42 0/1:39,0,78:42
9 6135335 . A G 21.3 . DP=8;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.28,1,1 GT:PL:GQ 0/1:28,0,54:31 0/1:28,0,54:31
9 6137083 . C T 119 . DP=8;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:77,9,0:57 1/1:77,9,0:57
9 6138260 . C A 11.6 . DP=4;AF1=0.4989;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=14.4;QCHI2=0;PCHI2=0.989;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:23,0,31:25 0/1:23,0,31:25
9 6138460 . T C 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 6139461 . A G 16.5 . DP=4;AF1=0.5711;CI95=0.5,1;DP4=2,0,2,0;MQ=27;FQ=-18;QCHI2=1;PCHI2=0.853;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:25,0,6:8 0/1:25,0,6:8
9 6139940 . T G 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.0067,1,0.32 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 6140139 . C A 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 6140279 . T C 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 6141019 . T A 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6142736 . T C 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,1.7e-07,1,1 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 6143845 . T A 9.8 . DP=8;AF1=0.4984;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.013,1,1 GT:PL:GQ 0/1:22,0,81:25 0/1:22,0,81:25
9 6145088 . G A 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=10,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.065,1,1 GT:PL:GQ 0/1:19,0,111:22 0/1:19,0,111:22
9 6145607 . TGGG TGG 6.77 . INDEL;DP=6;AF1=0.499;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=9.28;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,0,1,0.00018 GT:PL:GQ 0/1:24,0,52:27 0/1:24,0,52:27
9 6146685 . C A 11.6 . DP=8;AF1=0.4987;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=14.4;QCHI2=0;PCHI2=0.99;PC2=3,3;PV4=1,4.8e-05,1,0.39 GT:PL:GQ 0/1:23,0,81:26 0/1:23,0,81:26
9 6147056 . GAAAA GAAAAAA 234 . INDEL;DP=142;AF1=0.5;CI95=0.5,0.5;DP4=20,0,22,0;MQ=36;FQ=215;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,1,0.0054,2e-13 GT:PL:GQ 0/1:138,0,127:99 0/1:138,0,127:99
9 6151021 . AC A 31.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 6151098 . ATTTTTT ATTTTTTT 56.8 . INDEL;DP=10;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=34;FQ=-48.2;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:50,12,0:63 1/1:50,12,0:63
9 6151948 . GT GTT 23.7 . INDEL;DP=8;AF1=0.5007;CI95=0.5,0.5;DP4=2,0,4,0;MQ=28;FQ=11;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,1,0,1 GT:PL:GQ 0/1:33,0,25:27 0/1:33,0,25:27
9 6152087 . TGGGG TGGGGG 128 . INDEL;DP=198;AF1=1;CI95=1,1;DP4=6,0,84,0;MQ=25;FQ=-102;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,1,8.7e-54,1.7e-21 GT:PL:GQ 1/1:86,66,0:99 1/1:86,66,0:99
9 6152310 . G A 4.83 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,4,0;MQ=32;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 6152967 . C T 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.0049,1,1 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 6153750 . A ATCT 3.99 . INDEL;DP=12;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=6.01;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,1,1,0.00019 GT:PL:GQ 0/1:22,0,100:25 0/1:22,0,100:25
9 6153868 . G A 9.8 . DP=12;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,2.9e-05,1,1 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 6155806 . T C 29.3 . DP=12;AF1=0.4998;CI95=0.5,0.5;DP4=4,0,6,0;MQ=37;FQ=32.3;QCHI2=0;PCHI2=0.999;PC2=3,3;PV4=1,1.5e-08,1,1 GT:PL:GQ 0/1:32,0,53:35 0/1:32,0,53:35
9 6155948 . T G 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=33;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,2.7e-05,1,1 GT:PL:GQ 0/1:28,0,49:31 0/1:28,0,49:31
9 6156118 . T C 140 . DP=22;AF1=1;CI95=1,1;DP4=0,0,20,0;MQ=37;FQ=-58.7;QCHI2=0;PCHI2=0.999;PC2=3,3 GT:PL:GQ 1/1:88,30,0:99 1/1:88,30,0:99
9 6170579 . T C 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 6172824 . A C 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 6185340 . T G 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 6187025 . T G 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 6187101 . T G 3.79 . DP=12;AF1=0.496;CI95=0.25,0.5;DP4=8,0,4,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0.0047,1,1 GT:PL:GQ 0/1:18,0,90:21 0/1:18,0,90:21
9 6187115 . A G 33.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:34,6,0:51 1/1:34,6,0:51
9 6187361 . CCG CCGCG 87.2 . INDEL;DP=10;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=33;FQ=-45;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:65,9,0:57 1/1:65,9,0:57
9 6187362 . CGG CG 27.5 . INDEL;DP=10;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 6188104 . T G 5.04 . DP=4;AF1=0.4972;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.21;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,28:21 0/1:19,0,28:21
9 6188949 . A G 91.3 . DP=10;AF1=0.5016;CI95=0.5,0.5;DP4=2,0,8,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.995;PC2=3,3;PV4=1,3.3e-05,1,1 GT:PL:GQ 0/1:63,0,22:25 0/1:63,0,22:25
9 6189366 . T C 7.84 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 6190080 . T C 74.7 . DP=8;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:55,9,0:57 1/1:55,9,0:57
9 6190343 . C T 51.2 . DP=8;AF1=0.5004;CI95=0.5,0.5;DP4=2,0,4,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.999;PC2=3,3;PV4=1,0.0052,1,1 GT:PL:GQ 0/1:43,0,28:31 0/1:43,0,28:31
9 6191103 . G A 6.47 . DP=10;AF1=0.4975;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=8.93;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,2.8e-05,1,1 GT:PL:GQ 0/1:20,0,100:23 0/1:20,0,100:23
9 6191735 . T C 222 . DP=16;AF1=1;CI95=0.75,1;DP4=0,0,10,0;MQ=37;FQ=-43.7;QCHI2=0;PCHI2=0.97;PC2=3,3 GT:PL:GQ 1/1:129,15,0:78 1/1:129,15,0:78
9 6194018 . CAA CA 13.9 . INDEL;DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=15.9;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:28,0,31:29 0/1:28,0,31:29
9 6194224 . G C 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 6194765 . GCC GC 8.41 . INDEL;DP=6;AF1=0.4992;CI95=0.5,0.5;DP4=4,0,2,0;MQ=32;FQ=11.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,43:28 0/1:25,0,43:28
9 6195204 . C A 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 6195243 . A G 132 . DP=12;AF1=1;CI95=1,1;DP4=0,0,12,0;MQ=37;FQ=-46.7;QCHI2=0;PCHI2=0.984;PC2=3,3 GT:PL:GQ 1/1:84,18,0:75 1/1:84,18,0:75
9 6196088 . A G 42.7 . DP=8;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:39,9,0:57 1/1:39,9,0:57
9 6196411 . A G 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 6196522 . C T 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.00038,1,1 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 6196627 . C G 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.00011,1,0.083 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 6196724 . G T 17.4 . DP=6;AF1=0.4994;CI95=0.5,0.5;DP4=4,0,2,0;MQ=33;FQ=20.3;QCHI2=0;PCHI2=0.994;PC2=3,3;PV4=1,0.22,1,1 GT:PL:GQ 0/1:26,0,43:29 0/1:26,0,43:29
9 6196840 . G C 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 6196842 . A C 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 6196845 . G C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6198228 . T G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6200531 . G C 27.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=27.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 6200566 . C A 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 6201128 . T G 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 6201822 . A G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 6201825 . A G 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 6204049 . TGTC T 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6205082 . T G 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 6207368 . G GA 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6211343 . G T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6215873 . G A 9.56 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 6216600 . T G 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 6217202 . T G 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 6217455 . C A 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 6224264 . T G 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 6227422 . C A 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 6230640 . GTT GT 27.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 6231844 . T G 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 6234360 . C T 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 6234386 . G A 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 6234461 . T G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 6234951 . A C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6235565 . A G 37 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:35,3,0:42 1/1:35,3,0:42
9 6241228 . T G 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 6242824 . CT C 31.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 6243362 . GCTCT GCT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6244919 . A G 4.83 . DP=32;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 6245441 . C G 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 6245444 . C G 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 6245629 . G C 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 6245636 . G C 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 6245819 . T A 33 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 6246000 . A G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6246023 . C A 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 6246170 . C A 23.3 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=24.8;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:29,0,31:30 0/1:29,0,31:30
9 6246453 . C A 6.47 . DP=6;AF1=0.4975;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=8.93;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,1.8e-06,1,1 GT:PL:GQ 0/1:20,0,59:23 0/1:20,0,59:23
9 6246646 . A G 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 6249279 . A C 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 6249296 . A C 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 6250735 . G T 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 6251040 . T C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 6251549 . A G 39.4 . DP=8;AF1=0.5063;CI95=0.5,0.5;DP4=2,0,4,0;MQ=25;FQ=3.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.073,1,1 GT:PL:GQ 0/1:37,0,16:19 0/1:37,0,16:19
9 6251561 . G C 17.1 . DP=8;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6251653 . C A 12.9 . DP=4;AF1=0.9969;CI95=0.5,1;DP4=2,0,2,0;MQ=26;FQ=-28.3;QCHI2=1;PCHI2=0.736;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 1/1:22,1,0:23 1/1:22,1,0:23
9 6253171 . ATTGTTGTT ATTGTT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6255095 . A C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 6255810 . T G 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 6257603 . C CT 19.8 . INDEL;DP=4;AF1=0.5001;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.7;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:31,0,30:30 0/1:31,0,30:30
9 6258015 . T C 54.7 . DP=8;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:45,9,0:57 1/1:45,9,0:57
9 6258052 . G A 3.61 . DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 6258085 . C CGG 141 . INDEL;DP=20;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-45;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:92,9,0:57 1/1:92,9,0:57
9 6258300 . A C 194 . DP=12;AF1=1;CI95=1,1;DP4=0,0,12,0;MQ=35;FQ=-46.7;QCHI2=0;PCHI2=0.984;PC2=3,3 GT:PL:GQ 1/1:115,18,0:75 1/1:115,18,0:75
9 6258311 . T C 162 . DP=12;AF1=1;CI95=1,1;DP4=0,0,12,0;MQ=35;FQ=-46.7;QCHI2=0;PCHI2=0.984;PC2=3,3 GT:PL:GQ 1/1:99,18,0:75 1/1:99,18,0:75
9 6258371 . G T 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=10,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.00021,1,1 GT:PL:GQ 0/1:19,0,114:22 0/1:19,0,114:22
9 6258514 . C A 15.4 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=15.4;QCHI2=0;PCHI2=0.991;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:25,0,25:25 0/1:25,0,25:25
9 6258532 . G T 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 6258840 . GCCC GCC 211 . INDEL;DP=16;AF1=1;CI95=1,1;DP4=0,0,12,0;MQ=37;FQ=-54.3;QCHI2=0;PCHI2=0.984;PC2=3,3 GT:PL:GQ 1/1:127,18,0:75 1/1:127,18,0:75
9 6258937 . A G 164 . DP=12;AF1=1;CI95=1,1;DP4=0,0,12,0;MQ=35;FQ=-46.7;QCHI2=0;PCHI2=0.984;PC2=3,3 GT:PL:GQ 1/1:100,18,0:75 1/1:100,18,0:75
9 6259524 . T TGTG 125 . INDEL;DP=10;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=33;FQ=-45;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:84,9,0:57 1/1:84,9,0:57
9 6260107 . G C 3.61 . DP=34;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 6261699 . G C 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 6261704 . T C 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 6262459 . T C 33.3 . DP=12;AF1=0.5003;CI95=0.5,0.5;DP4=2,0,4,0;MQ=37;FQ=24;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0.0024,1,0.31 GT:PL:GQ 0/1:34,0,28:30 0/1:34,0,28:30
9 6262468 . G A 55.3 . DP=10;AF1=0.5008;CI95=0.5,0.5;DP4=2,0,6,0;MQ=37;FQ=18.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,2.7e-06,1,1 GT:PL:GQ 0/1:45,0,25:28 0/1:45,0,25:28
9 6262905 . GTGCTGCTGCTGCTGCTGCTGCTGCTGCT GTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT 3.99 . INDEL;DP=24;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=6.01;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,1,1,0.41 GT:PL:GQ 0/1:22,0,85:25 0/1:22,0,85:25
9 6263491 . GT G 192 . INDEL;DP=50;AF1=0.5;CI95=0.5,0.5;DP4=10,0,22,0;MQ=34;FQ=123;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,0.017,0.014,1.3e-11 GT:PL:GQ 0/1:117,0,81:84 0/1:117,0,81:84
9 6263601 . CA C 116 . INDEL;DP=8;AF1=0.5008;CI95=0.5,0.5;DP4=2,0,6,0;MQ=37;FQ=11.1;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:79,0,25:28 0/1:79,0,25:28
9 6264110 . T C 57.5 . DP=38;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:46,6,0:51 1/1:46,6,0:51
9 6264193 . A G 47.5 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:41,6,0:51 1/1:41,6,0:51
9 6265984 . G GC 132 . INDEL;DP=70;AF1=0.5;CI95=0.5,0.5;DP4=4,0,14,0;MQ=30;FQ=40.7;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,0,0.00014,9.5e-11 GT:PL:GQ 0/1:87,0,40:43 0/1:87,0,40:43
9 6266267 . C A 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,3.9e-08,1,1 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 6266982 . A C 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.0043,1,0.24 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 6268422 . A G 115 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=20,0,16,0;MQ=36;FQ=118;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,9.8e-14,0.055,0.23 GT:PL:GQ 0/1:75,0,147:78 0/1:75,0,147:78
9 6269078 . A C 27.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=27.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 6269855 . T C 57.2 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=16,0,10,0;MQ=37;FQ=60.2;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,1.7e-13,1,1 GT:PL:GQ 0/1:46,0,139:49 0/1:46,0,139:49
9 6270511 . A G 41.2 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=12,0,8,0;MQ=35;FQ=44.2;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,2.5e-11,0.33,1 GT:PL:GQ 0/1:38,0,117:41 0/1:38,0,117:41
9 6270618 . A T 9.81 . DP=12;AF1=0.4988;CI95=0.5,0.5;DP4=2,0,4,0;MQ=37;FQ=12.3;QCHI2=0;PCHI2=0.986;PC2=3,3;PV4=1,1.5e-05,1,1 GT:PL:GQ 0/1:22,0,28:24 0/1:22,0,28:24
9 6270657 . GA G 137 . INDEL;DP=6;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-45;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:90,9,0:57 1/1:90,9,0:57
9 6273752 . G A 324 . DP=28;AF1=1;CI95=1,1;DP4=0,0,24,0;MQ=37;FQ=-64.7;QCHI2=0;PCHI2=1;PC2=3,3 GT:PL:GQ 1/1:180,36,0:99 1/1:180,36,0:99
9 6275223 . G A 56.7 . DP=180;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:46,9,0:57 1/1:46,9,0:57
9 6275498 . G A 115 . DP=218;AF1=0.5;CI95=0.5,0.5;DP4=126,0,74,0;MQ=37;FQ=118;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,5.5e-70,0.29,1 GT:PL:GQ 0/1:75,0,168:78 0/1:75,0,168:78
9 6275784 . C G 91.2 . DP=190;AF1=0.5;CI95=0.5,0.5;DP4=90,0,66,0;MQ=36;FQ=94.2;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,3.2e-82,0.12,1 GT:PL:GQ 0/1:63,0,167:66 0/1:63,0,167:66
9 6279189 . T C 21.3 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=23.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:28,0,31:29 0/1:28,0,31:29
9 6279840 . TA T 31.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 6284421 . T G 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 6291082 . A C 5.09 . DP=6;AF1=0.5019;CI95=0.5,0.5;DP4=2,0,2,0;MQ=24;FQ=3.58;QCHI2=0;PCHI2=0.972;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:19,0,17:18 0/1:19,0,17:18
9 6292064 . A C 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 6292078 . T C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6293544 . C G 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6295741 . A G 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=23;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 6296457 . AT ATCT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6297372 . C CA 33.5 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6297373 . CA CAGA 33.5 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6299670 . C T 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 6300013 . A G 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 6300026 . G T 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 6300517 . C T 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 6300521 . A C 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 6300565 . T C 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 6301733 . A G 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6302547 . T G 27.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=27.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 6302969 . C A 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 6303843 . A C 6.52 . DP=4;AF1=0.5007;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=5.68;QCHI2=0;PCHI2=0.976;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:20,0,19:20 0/1:20,0,19:20
9 6304319 . A C 35 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 6316113 . T C 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=18;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 6321024 . T G 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 6321340 . G C 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6325982 . G C 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 6334842 . T C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 6334854 . A C 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 6335700 . G A 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 6336444 . G T 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6337948 . T G 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6339451 . T C 25.3 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=26.1;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:30,0,31:30 0/1:30,0,31:30
9 6343087 . C A 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 6353130 . C G 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 6356808 . G GA 6.57 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=23;FQ=-38.3;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 6358063 . A C 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 6358065 . G C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6358727 . A C 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 6359523 . G T 31 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:32,3,0:42 1/1:32,3,0:42
9 6361234 . C A 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 6361518 . C A 3.79 . DP=6;AF1=0.496;CI95=0.25,0.5;DP4=4,0,2,0;MQ=33;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,8.4e-08,1,1 GT:PL:GQ 0/1:18,0,49:21 0/1:18,0,49:21
9 6362269 . C T 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 6362274 . C T 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 6370069 . G C 5.03 . DP=6;AF1=0.4968;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,3.6e-05,1,1 GT:PL:GQ 0/1:19,0,59:22 0/1:19,0,59:22
9 6371520 . A AG 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6372029 . T C 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,3.2e-08,1,1 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 6372226 . G A 13.5 . DP=4;AF1=0.4992;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=16.2;QCHI2=0;PCHI2=0.991;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:24,0,31:26 0/1:24,0,31:26
9 6377126 . A C 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 6378814 . A G 52.7 . DP=6;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:44,9,0:57 1/1:44,9,0:57
9 6379451 . C G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 6379547 . C CT 19.8 . INDEL;DP=4;AF1=0.5001;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.7;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,30:30 0/1:31,0,30:30
9 6380420 . C T 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 6381388 . C T 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 6381953 . TAAAA TAAAAA 9.94 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6382679 . T TC 12 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12;QCHI2=0;PCHI2=0.994;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:27,0,27:27 0/1:27,0,27:27
9 6388203 . T C 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 6389829 . G A 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=10,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.0062,1,0.0085 GT:PL:GQ 0/1:19,0,114:22 0/1:19,0,114:22
9 6390297 . C T 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.13,1,1 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 6390314 . T C 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.14,1,1 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 6390858 . T TCG 5.1 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 6390893 . G A 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 6391789 . C T 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 6391923 . T G 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.042,1,0.0092 GT:PL:GQ 0/1:22,0,98:25 0/1:22,0,98:25
9 6392007 . T C 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 6392351 . G C 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 6392537 . A C 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,3.7e-08,1,1 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 6392601 . C A 8.08 . DP=4;AF1=0.4982;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:21,0,31:24 0/1:21,0,31:24
9 6392868 . CAA CA 8.41 . INDEL;DP=6;AF1=0.4992;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=11.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0.32,1,1 GT:PL:GQ 0/1:25,0,55:28 0/1:25,0,55:28
9 6392992 . A C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 6393030 . T G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 6393260 . C G 87.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:61,6,0:51 1/1:61,6,0:51
9 6393480 . G C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 6394249 . CA CAA 13.9 . INDEL;DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.8;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1,1,0.013 GT:PL:GQ 0/1:28,0,53:31 0/1:28,0,53:31
9 6397225 . A G 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 6418555 . T G 33 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 6418563 . T G 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 6421880 . C T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6421908 . G A 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 6426435 . T C 29.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:32,6,0:51 1/1:32,6,0:51
9 6426676 . C T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6429180 . A G 53.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:44,6,0:51 1/1:44,6,0:51
9 6430403 . A C 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 6430871 . T C 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 6430917 . A T 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 6440618 . GGAGAGAGAGAGA GGAGAGAGAGAGAGA 92 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-41.8;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:67,6,0:51 1/1:67,6,0:51
9 6441549 . A C 33 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 6442084 . T G 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 6443563 . C T 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 6445557 . T C 27.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=27.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 6446095 . G A 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 6446805 . C A 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 6447219 . A G 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=23;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 6447754 . CGGG CGG 12 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12;QCHI2=0;PCHI2=0.994;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:27,0,27:27 0/1:27,0,27:27
9 6448384 . T C 4.83 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 6448947 . A G 39 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 6449051 . A G 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 6449345 . C A 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 6452406 . T G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6463190 . T C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6465480 . G GA 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6466381 . G A 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6469817 . A G 237 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=14,0,18,0;MQ=37;FQ=216;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,4.3e-06,1,0.41 GT:PL:GQ 0/1:136,0,124:99 0/1:136,0,124:99
9 6471541 . A G 62.7 . DP=8;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:49,9,0:57 1/1:49,9,0:57
9 6472962 . T G 23 . DP=8;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 6472981 . A G 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.0064,1,1 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 6473098 . A G 122 . DP=14;AF1=1;CI95=1,1;DP4=0,0,12,0;MQ=37;FQ=-46.7;QCHI2=0;PCHI2=0.984;PC2=3,3 GT:PL:GQ 1/1:79,18,0:75 1/1:79,18,0:75
9 6474533 . A G 3.79 . DP=10;AF1=0.496;CI95=0.25,0.5;DP4=4,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,2.5e-05,1,0.25 GT:PL:GQ 0/1:18,0,59:21 0/1:18,0,59:21
9 6475917 . T C 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=17;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 6478770 . ACCC ACC 53.7 . INDEL;DP=8;AF1=0.501;CI95=0.5,0.5;DP4=2,0,4,0;MQ=37;FQ=9.28;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:48,0,24:27 0/1:48,0,24:27
9 6479204 . GA G 12 . INDEL;DP=6;AF1=0.4995;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=14.9;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:27,0,59:30 0/1:27,0,59:30
9 6479323 . A C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 6479326 . A C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 6479330 . A C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 6480541 . CTTT CTT 6.77 . INDEL;DP=6;AF1=0.499;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=9.28;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:24,0,52:27 0/1:24,0,52:27
9 6480841 . T G 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 6480896 . CTTT CTT 6.77 . INDEL;DP=6;AF1=0.499;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=9.28;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:24,0,52:27 0/1:24,0,52:27
9 6483525 . T C 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=10,0,2,0;MQ=35;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,1e-05,1,1 GT:PL:GQ 0/1:19,0,108:22 0/1:19,0,108:22
9 6483721 . T C 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.0027,1,1 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 6484520 . T G 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 6486669 . TACACACACACACACACAC TACACACACACACACAC 19.8 . INDEL;DP=6;AF1=0.5004;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:31,0,26:28 0/1:31,0,26:28
9 6487145 . G C 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 6488766 . A G 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 6488930 . A C 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 6488952 . A C 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 6489109 . A G 27 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:30,3,0:42 1/1:30,3,0:42
9 6489573 . T C 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.00055,1,1 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 6489652 . T C 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6489783 . T A 23 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 6489837 . T G 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6498589 . T A 15.4 . DP=8;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0.13,1,1 GT:PL:GQ 0/1:25,0,77:28 0/1:25,0,77:28
9 6509531 . T G 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 6515168 . A C 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 6519920 . T C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6524297 . A C 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 6529111 . T TC 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6531146 . T A 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 6531149 . C T 27 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:30,3,0:42 1/1:30,3,0:42
9 6533644 . C CATG 215 . INDEL;DP=10;AF1=1;CI95=0.75,1;DP4=0,0,10,0;MQ=37;FQ=-51.2;QCHI2=0;PCHI2=0.97;PC2=3,3 GT:PL:GQ 1/1:129,15,0:78 1/1:129,15,0:78
9 6535684 . A C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 6536139 . T G 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6564440 . A G 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=32;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 6564450 . T G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 6568567 . C G 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 6568583 . A C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6569724 . C T 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 6571967 . A C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6571972 . A C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6571978 . T C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6573600 . T A 11.6 . DP=4;AF1=0.4989;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=14.4;QCHI2=0;PCHI2=0.989;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:23,0,31:25 0/1:23,0,31:25
9 6575754 . T TC 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6580434 . A T 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 6580605 . G A 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 6581001 . C A 3.84 . DP=4;AF1=0.501;CI95=0.25,0.5;DP4=2,0,2,0;MQ=31;FQ=3.23;QCHI2=0;PCHI2=0.972;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:18,0,17:18 0/1:18,0,17:18
9 6581005 . C T 8.15 . DP=4;AF1=0.503;CI95=0.5,0.5;DP4=2,0,2,0;MQ=31;FQ=4.03;QCHI2=0;PCHI2=0.973;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:21,0,17:19 0/1:21,0,17:19
9 6584262 . A C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 6584265 . A C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 6584579 . A T 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 6584619 . A T 35 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 6585610 . A T 19.3 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=21.7;QCHI2=0;PCHI2=0.995;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:27,0,31:29 0/1:27,0,31:29
9 6592844 . GTTTTTT GTTTT 25.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 6594109 . T TA 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6599119 . A G 47.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:41,6,0:51 1/1:41,6,0:51
9 6599469 . T G 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 6599641 . TC TCC 19.8 . INDEL;DP=4;AF1=0.5006;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=10.8;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,25:27 0/1:31,0,25:27
9 6601948 . T G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6601978 . C A 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6601985 . C A 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6602267 . G C 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 6604228 . ATCTC ATCTCTC 19.8 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=19.8;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 6606334 . C A 85.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:60,6,0:51 1/1:60,6,0:51
9 6606378 . A T 25.3 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=26.1;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:30,0,31:30 0/1:30,0,31:30
9 6607338 . A G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 6608263 . G GT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6609399 . T C 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6613655 . C A 13.5 . DP=6;AF1=0.499;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.4;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:24,0,59:27 0/1:24,0,59:27
9 6614332 . T C 61.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:48,6,0:51 1/1:48,6,0:51
9 6616827 . A C 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 6622104 . T G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 6622117 . T G 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 6622119 . T G 5.04 . DP=4;AF1=0.4971;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.23;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,29:22 0/1:19,0,29:22
9 6622149 . G C 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 6622160 . C A 27.3 . DP=4;AF1=0.5006;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,25:27 0/1:31,0,25:27
9 6622332 . A G 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 6622341 . T G 23.3 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=24.8;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:29,0,31:30 0/1:29,0,31:30
9 6624230 . G T 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=32;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 6625378 . T C 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 6627215 . A C 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 6629460 . T A 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 6631867 . G A 41.2 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=6,0,4,0;MQ=37;FQ=44.2;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,3.7e-09,1,1 GT:PL:GQ 0/1:38,0,79:41 0/1:38,0,79:41
9 6632681 . T C 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.22,1,1 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 6633616 . A C 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 6635046 . G A 59.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:47,6,0:51 1/1:47,6,0:51
9 6646131 . C A 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 6649160 . T C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 6650745 . T G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 6651299 . AGGG AGGGG 64 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=32;FQ=-41.8;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:53,6,0:51 1/1:53,6,0:51
9 6651878 . C A 39 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 6653113 . G A 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 6654785 . G A 41.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:38,6,0:51 1/1:38,6,0:51
9 6654872 . C G 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 6654962 . C A 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 6654999 . G T 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 6655841 . G A 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 6660013 . A C 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 6660290 . T A 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6660304 . A G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6660310 . T C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6664626 . T G 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 6664633 . T G 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.00096,1,1 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 6666703 . T G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6669551 . A C 19.3 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=21.7;QCHI2=0;PCHI2=0.995;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:27,0,31:29 0/1:27,0,31:29
9 6669957 . CTGTGTGTGTGTGTG CTGTGTGTGTGTG 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6673494 . T C 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=20;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 6678544 . A G 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 6678656 . A C 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 6681637 . T C 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 6691105 . G C 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6699384 . CAAAA CAA 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6868269 . CTTT CTT 12.1 . INDEL;DP=4;AF1=0.5045;CI95=0.5,0.5;DP4=2,0,2,0;MQ=31;FQ=-6.31;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:27,0,17:20 0/1:27,0,17:20
9 6868357 . C CT 111 . INDEL;DP=6;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=33;FQ=-45;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:77,9,0:57 1/1:77,9,0:57
9 6868685 . C G 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=23;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 6869090 . C G 35.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=28;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:35,6,0:51 1/1:35,6,0:51
9 6871200 . C G 19.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=31;FQ=22.2;QCHI2=0;PCHI2=0.995;PC2=3,3;PV4=1,0.0071,1,1 GT:PL:GQ 0/1:27,0,37:30 0/1:27,0,37:30
9 6871446 . A G 74.2 . DP=10;AF1=1;CI95=0.75,1;DP4=0,0,10,0;MQ=17;FQ=-43.7;QCHI2=0;PCHI2=0.97;PC2=3,3 GT:PL:GQ 1/1:55,15,0:78 1/1:55,15,0:78
9 6873028 . A C 3.67 . DP=4;AF1=0.6196;CI95=0.5,1;DP4=2,0,2,0;MQ=18;FQ=-21.1;QCHI2=1;PCHI2=0.874;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:17,0,4:6 0/1:17,0,4:6
9 6873777 . G A 44.7 . DP=6;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=24;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:40,9,0:57 1/1:40,9,0:57
9 6873857 . T C 7.84 . DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=20;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 6874135 . G T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6874155 . T G 5.09 . DP=4;AF1=0.5019;CI95=0.5,0.5;DP4=2,0,2,0;MQ=24;FQ=3.58;QCHI2=0;PCHI2=0.972;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:19,0,17:18 0/1:19,0,17:18
9 6874563 . G C 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 6876200 . C G 180 . DP=28;AF1=1;CI95=1,1;DP4=0,0,26,0;MQ=36;FQ=-67.7;QCHI2=0;PCHI2=1;PC2=3,3 GT:PL:GQ 1/1:108,39,0:99 1/1:108,39,0:99
9 6876500 . CTGTGTGTGTGTGTGTGTGTG CTGTGTGTGTGTGTGTGTGTGTG 271 . INDEL;DP=24;AF1=1;CI95=1,1;DP4=2,0,20,0;MQ=36;FQ=-55.3;QCHI2=0;PCHI2=0.988;PC2=3,3;PV4=1,1,0.33,0.36 GT:PL:GQ 1/1:157,19,0:79 1/1:157,19,0:79
9 6876516 . GT GTAT 3.99 . INDEL;DP=30;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=6.01;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:22,0,75:25 0/1:22,0,75:25
9 6877659 . T C 39.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=25;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:37,6,0:51 1/1:37,6,0:51
9 6880802 . T A 3.79 . DP=8;AF1=0.496;CI95=0.25,0.5;DP4=6,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0.06,1,0.085 GT:PL:GQ 0/1:18,0,77:21 0/1:18,0,77:21
9 6881826 . G A 19.6 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:27,6,0:51 1/1:27,6,0:51
9 6882024 . A C 29.3 . DP=22;AF1=0.4998;CI95=0.5,0.5;DP4=18,0,4,0;MQ=37;FQ=32.3;QCHI2=0;PCHI2=0.999;PC2=3,3;PV4=1,0.00094,1,1 GT:PL:GQ 0/1:32,0,146:35 0/1:32,0,146:35
9 6882342 . GTTTTTT GTTTTTTT 80.5 . INDEL;DP=16;AF1=1;CI95=1,1;DP4=0,0,12,0;MQ=37;FQ=-54.3;QCHI2=0;PCHI2=0.984;PC2=3,3 GT:PL:GQ 1/1:62,18,0:75 1/1:62,18,0:75
9 6882780 . C CCAT 33.5 . INDEL;DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6883758 . A G 57.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:46,6,0:51 1/1:46,6,0:51
9 6884417 . T G 11.6 . DP=4;AF1=0.499;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=14.3;QCHI2=0;PCHI2=0.989;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:23,0,30:25 0/1:23,0,30:25
9 6884432 . T G 11.6 . DP=8;AF1=0.4987;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=14.4;QCHI2=0;PCHI2=0.99;PC2=3,3;PV4=1,6.9e-07,1,1 GT:PL:GQ 0/1:23,0,81:26 0/1:23,0,81:26
9 6884716 . A G 45.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:40,6,0:51 1/1:40,6,0:51
9 6886266 . T G 25.3 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=26.1;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:30,0,31:30 0/1:30,0,31:30
9 6887354 . GTTTTTTT GTTTTTTTTT 101 . INDEL;DP=6;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-45;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:72,9,0:57 1/1:72,9,0:57
9 6888818 . C G 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 6889637 . T G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6891227 . GC G 17.8 . INDEL;DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.7;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:30,0,31:30 0/1:30,0,31:30
9 6892453 . T G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6892468 . T A 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6895108 . T A 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.031,1,0.44 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 6895982 . C A 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 6896087 . A C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 6897068 . C CT 8.41 . INDEL;DP=8;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=11.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,1,1,0.00077 GT:PL:GQ 0/1:25,0,79:28 0/1:25,0,79:28
9 6897147 . AT A 12 . INDEL;DP=8;AF1=0.4995;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=14.9;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0,1,0.24 GT:PL:GQ 0/1:27,0,59:30 0/1:27,0,59:30
9 6898970 . A C 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 6898977 . A C 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6900325 . A G 13.5 . DP=6;AF1=0.499;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.4;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,2.5e-05,1,1 GT:PL:GQ 0/1:24,0,59:27 0/1:24,0,59:27
9 6904440 . G T 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 6905837 . A C 25.3 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=26.1;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:30,0,31:30 0/1:30,0,31:30
9 6908509 . A T 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.0016,1,1 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 6908528 . ATTTTT ATTT 13.9 . INDEL;DP=8;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.8;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1,1,0.16 GT:PL:GQ 0/1:28,0,43:31 0/1:28,0,43:31
9 6908602 . C CA 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6909681 . C T 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 6910930 . C T 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 6913861 . T A 39.2 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=4,0,4,0;MQ=37;FQ=42.2;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,2.1e-07,1,1 GT:PL:GQ 0/1:37,0,56:40 0/1:37,0,56:40
9 6914165 . GAAA GAAAA 25.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 6914959 . G C 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 6917334 . C A 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 6918300 . G T 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=23;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 6918911 . T G 13.5 . DP=8;AF1=0.499;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=16.4;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,1.7e-05,1,1 GT:PL:GQ 0/1:24,0,81:27 0/1:24,0,81:27
9 6920395 . A ATC 20.1 . INDEL;DP=6;AF1=0.5205;CI95=0.5,0.75;DP4=2,0,2,0;MQ=37;FQ=-16.7;QCHI2=0;PCHI2=0.943;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:31,0,11:14 0/1:31,0,11:14
9 6920441 . C A 6.47 . DP=6;AF1=0.4975;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=8.93;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,3.3e-05,1,0.22 GT:PL:GQ 0/1:20,0,59:23 0/1:20,0,59:23
9 6920992 . TAAA TAAAA 12 . INDEL;DP=4;AF1=0.5003;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=9.78;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:27,0,25:26 0/1:27,0,25:26
9 6922065 . G A 27.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:31,6,0:51 1/1:31,6,0:51
9 6923025 . T G 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=33;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.0004,1,0.093 GT:PL:GQ 0/1:22,0,79:25 0/1:22,0,79:25
9 6924969 . G A 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 6924976 . C A 8.08 . DP=6;AF1=0.498;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0.0003,1,0.18 GT:PL:GQ 0/1:21,0,59:24 0/1:21,0,59:24
9 6925283 . A G 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,1.6e-06,1,0.16 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 6925663 . A G 86.2 . DP=10;AF1=1;CI95=0.75,1;DP4=0,0,10,0;MQ=32;FQ=-43.7;QCHI2=0;PCHI2=0.97;PC2=3,3 GT:PL:GQ 1/1:61,15,0:78 1/1:61,15,0:78
9 6925704 . T C 5.97 . DP=4;AF1=0.9969;CI95=0.5,1;DP4=2,0,2,0;MQ=16;FQ=-28.2;QCHI2=1;PCHI2=0.787;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 1/1:18,1,0:23 1/1:18,1,0:23
9 6927003 . G C 27.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=27.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 6927080 . T G 31 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:32,3,0:42 1/1:32,3,0:42
9 6927188 . C G 160 . DP=10;AF1=1;CI95=0.75,1;DP4=0,0,10,0;MQ=37;FQ=-43.7;QCHI2=0;PCHI2=0.97;PC2=3,3 GT:PL:GQ 1/1:98,15,0:78 1/1:98,15,0:78
9 6927457 . CAAT C 13.9 . INDEL;DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.8;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0,1,0.041 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 6931832 . T C 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 6932366 . T C 108 . DP=12;AF1=1;CI95=1,1;DP4=0,0,12,0;MQ=37;FQ=-46.7;QCHI2=0;PCHI2=0.984;PC2=3,3 GT:PL:GQ 1/1:72,18,0:75 1/1:72,18,0:75
9 6932456 . CCTCTCTCTCTCTCTCTCTCT CCTCTCTCTCTCTCTCTCTCTCT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6932872 . C A 5.03 . DP=6;AF1=0.4968;CI95=0.5,0.5;DP4=4,0,2,0;MQ=33;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,3.3e-05,1,0.00045 GT:PL:GQ 0/1:19,0,49:22 0/1:19,0,49:22
9 6932900 . T C 80.7 . DP=8;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=33;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:58,9,0:57 1/1:58,9,0:57
9 6933496 . T C 8.08 . DP=4;AF1=0.4982;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:21,0,31:24 0/1:21,0,31:24
9 6935362 . TG T 31.5 . INDEL;DP=8;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 6935370 . T C 15.4 . DP=8;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0.011,1,1 GT:PL:GQ 0/1:25,0,81:28 0/1:25,0,81:28
9 6935473 . TG T 12 . INDEL;DP=6;AF1=0.4995;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=14.9;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.41,1,0.032 GT:PL:GQ 0/1:27,0,55:30 0/1:27,0,55:30
9 6935574 . C T 108 . DP=8;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=30;FQ=-40.6;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:72,12,0:63 1/1:72,12,0:63
9 6935613 . A C 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 6935755 . A T 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6936513 . CCA C 92 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-41.8;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:67,6,0:51 1/1:67,6,0:51
9 6937696 . T G 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 6939756 . A C 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 6940538 . T G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 6942320 . C A 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 6943920 . GA GAA 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6946119 . C T 25.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:30,6,0:51 1/1:30,6,0:51
9 6946460 . T G 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 6946819 . T C 27.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=27.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 6946982 . C A 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6947563 . C T 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 6947747 . T G 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 6947757 . T C 6.5 . DP=4;AF1=0.4991;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:20,0,22:21 0/1:20,0,22:21
9 6950253 . C T 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 6950613 . C G 84.4 . DP=8;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=37;FQ=-40.6;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:60,12,0:63 1/1:60,12,0:63
9 6952612 . TCC TC 8.41 . INDEL;DP=6;AF1=0.4992;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=11.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,0.059 GT:PL:GQ 0/1:25,0,59:28 0/1:25,0,59:28
9 6953394 . T C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6953412 . A G 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 6954582 . C T 5.52 . DP=4;AF1=0.5399;CI95=0.5,0.75;DP4=2,0,2,0;MQ=32;FQ=-14.7;QCHI2=0;PCHI2=0.912;PC2=3,3;PV4=1,1,0,1 GT:PL:GQ 0/1:19,0,8:10 0/1:19,0,8:10
9 6954627 . T G 3.61 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 6954910 . A C 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 6955224 . T G 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 6955487 . T G 19.3 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=21.7;QCHI2=0;PCHI2=0.995;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:27,0,31:29 0/1:27,0,31:29
9 6955764 . T C 92.4 . DP=18;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=37;FQ=-40.6;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:64,12,0:63 1/1:64,12,0:63
9 6956246 . A G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 6958305 . A G 5.03 . DP=6;AF1=0.4968;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.12,1,1 GT:PL:GQ 0/1:19,0,54:22 0/1:19,0,54:22
9 6958780 . A T 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 6959393 . A C 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.041,1,0.3 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 6959636 . G T 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 6959822 . A C 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,4.5e-05,1,0.11 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 6959853 . C T 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 6959925 . C T 149 . DP=10;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:92,9,0:57 1/1:92,9,0:57
9 6960337 . A C 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 6960370 . A C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 6961000 . G T 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 6964356 . C A 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 6964647 . T C 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 6964700 . T A 8.08 . DP=4;AF1=0.4982;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:21,0,31:24 0/1:21,0,31:24
9 6965134 . G A 133 . DP=6;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=33;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:84,9,0:57 1/1:84,9,0:57
9 6965271 . T G 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 6965696 . T A 33.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:34,6,0:51 1/1:34,6,0:51
9 6965967 . C A 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.00056,1,0.018 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 6966804 . T G 6.47 . DP=10;AF1=0.4975;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=8.93;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0.037,1,1 GT:PL:GQ 0/1:20,0,100:23 0/1:20,0,100:23
9 6968768 . T A 17.1 . DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 6968831 . CTT CT 27.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 6969479 . T G 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 6972567 . G T 27.3 . DP=4;AF1=0.5001;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=26.1;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,30:30 0/1:31,0,30:30
9 6973261 . T C 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.45,1,1 GT:PL:GQ 0/1:28,0,58:31 0/1:28,0,58:31
9 6973270 . T C 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.16,1,1 GT:PL:GQ 0/1:22,0,96:25 0/1:22,0,96:25
9 6973475 . T C 3.79 . DP=6;AF1=0.496;CI95=0.25,0.5;DP4=4,0,2,0;MQ=32;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0.0099,1,1 GT:PL:GQ 0/1:18,0,42:21 0/1:18,0,42:21
9 6973483 . T C 15.4 . DP=6;AF1=0.4992;CI95=0.5,0.5;DP4=4,0,2,0;MQ=32;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0.00077,1,1 GT:PL:GQ 0/1:25,0,42:28 0/1:25,0,42:28
9 6974606 . A C 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 6975550 . T C 29 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 6976122 . T C 11.6 . DP=8;AF1=0.4987;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=14.4;QCHI2=0;PCHI2=0.99;PC2=3,3;PV4=1,0.0011,1,1 GT:PL:GQ 0/1:23,0,81:26 0/1:23,0,81:26
9 7009638 . A C 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 7039638 . T G 39 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 7043322 . C T 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 7198493 . C G 6.48 . DP=4;AF1=0.4983;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.59;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:20,0,25:22 0/1:20,0,25:22
9 7201111 . G A 273 . DP=182;AF1=0.5;CI95=0.5,0.5;DP4=94,0,74,0;MQ=37;FQ=276;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,3.4e-27,1,1 GT:PL:GQ 0/1:154,0,168:99 0/1:154,0,168:99
9 7203228 . G A 197 . DP=130;AF1=0.5;CI95=0.5,0.5;DP4=62,0,60,0;MQ=37;FQ=200;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,1.3e-35,0.075,1 GT:PL:GQ 0/1:116,0,164:99 0/1:116,0,164:99
9 7204242 . A C 29 . DP=44;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 7205266 . A G 15.6 . DP=116;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.825;PC2=3,3 GT:PL:GQ 1/1:25,6,0:51 1/1:25,6,0:51
9 7206235 . G T 15.4 . DP=6;AF1=0.4992;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0.12,1,1 GT:PL:GQ 0/1:25,0,58:28 0/1:25,0,58:28
9 7207199 . CA CAA 13.9 . INDEL;DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.8;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1,1,0.13 GT:PL:GQ 0/1:28,0,53:31 0/1:28,0,53:31
9 7207753 . C CA 13.9 . INDEL;DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.8;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:28,0,57:31 0/1:28,0,57:31
9 7207813 . C T 8.08 . DP=6;AF1=0.4983;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=10.6;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:21,0,30:23 0/1:21,0,30:23
9 7208413 . TA T 17.8 . INDEL;DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.7;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:30,0,31:30 0/1:30,0,31:30
9 7208474 . C G 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=10,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.0021,1,1 GT:PL:GQ 0/1:19,0,114:22 0/1:19,0,114:22
9 7209224 . A G 132 . DP=12;AF1=1;CI95=1,1;DP4=0,0,12,0;MQ=37;FQ=-46.7;QCHI2=0;PCHI2=0.984;PC2=3,3 GT:PL:GQ 1/1:84,18,0:75 1/1:84,18,0:75
9 7209421 . G C 11.6 . DP=4;AF1=0.4989;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=14.4;QCHI2=0;PCHI2=0.989;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:23,0,31:25 0/1:23,0,31:25
9 7209472 . A G 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,6e-07,1,0.23 GT:PL:GQ 0/1:22,0,100:25 0/1:22,0,100:25
9 7209661 . T A 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=10,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.00041,1,0.27 GT:PL:GQ 0/1:19,0,114:22 0/1:19,0,114:22
9 7212420 . G C 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=10,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.065,1,1 GT:PL:GQ 0/1:19,0,113:22 0/1:19,0,113:22
9 7212578 . A C 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 7212630 . T G 15.4 . DP=8;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=34;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0.29,1,1 GT:PL:GQ 0/1:25,0,68:28 0/1:25,0,68:28
9 7212888 . A AT 6.77 . INDEL;DP=10;AF1=0.499;CI95=0.5,0.5;DP4=4,0,4,0;MQ=34;FQ=9.28;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,0.24,0.067,0.34 GT:PL:GQ 0/1:24,0,51:27 0/1:24,0,51:27
9 7213036 . G T 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 7213041 . G T 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 7213674 . C A 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 7217721 . TA TAA 220 . INDEL;DP=28;AF1=0.5;CI95=0.5,0.5;DP4=10,0,14,0;MQ=37;FQ=141;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:131,0,90:93 0/1:131,0,90:93
9 7217800 . C T 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.24,1,0.4 GT:PL:GQ 0/1:22,0,99:25 0/1:22,0,99:25
9 7217846 . C G 23.3 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=24.8;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:29,0,31:30 0/1:29,0,31:30
9 7219523 . C T 186 . DP=26;AF1=1;CI95=1,1;DP4=0,0,20,0;MQ=37;FQ=-58.7;QCHI2=0;PCHI2=0.999;PC2=3,3 GT:PL:GQ 1/1:111,30,0:99 1/1:111,30,0:99
9 7219580 . T A 212 . DP=22;AF1=1;CI95=1,1;DP4=0,0,20,0;MQ=36;FQ=-58.7;QCHI2=0;PCHI2=0.999;PC2=3,3 GT:PL:GQ 1/1:124,30,0:99 1/1:124,30,0:99
9 7221049 . T A 17.1 . DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 7221791 . C T 115 . DP=6;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:75,9,0:57 1/1:75,9,0:57
9 7222085 . CTTTTTTTT CTTTTTTTTT 26.8 . INDEL;DP=12;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=34;FQ=-48.1;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:35,12,0:63 1/1:35,12,0:63
9 7222153 . C A 19.3 . DP=6;AF1=0.4995;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=22.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.28,1,0.26 GT:PL:GQ 0/1:27,0,54:30 0/1:27,0,54:30
9 7222160 . C G 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.00018,1,1 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 7222219 . T C 31.2 . DP=16;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,6,0;MQ=33;FQ=34.2;QCHI2=0;PCHI2=0.999;PC2=3,3;PV4=1,0.0036,0.018,0.058 GT:PL:GQ 0/1:33,0,48:36 0/1:33,0,48:36
9 7222225 . T C 11.6 . DP=16;AF1=0.4987;CI95=0.5,0.5;DP4=12,0,4,0;MQ=33;FQ=14.4;QCHI2=0;PCHI2=0.99;PC2=3,3;PV4=1,0.0047,0.00046,0.37 GT:PL:GQ 0/1:23,0,117:26 0/1:23,0,117:26
9 7222457 . T C 7.84 . DP=22;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 7223021 . T C 7.6 . DP=6;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=9;FQ=-37.4;QCHI2=0;PCHI2=0.907;PC2=3,3 GT:PL:GQ 1/1:21,9,0:57 1/1:21,9,0:57
9 7223926 . T C 172 . DP=18;AF1=1;CI95=1,1;DP4=0,0,16,0;MQ=37;FQ=-52.7;QCHI2=0;PCHI2=0.996;PC2=3,3 GT:PL:GQ 1/1:104,24,0:99 1/1:104,24,0:99
9 7225045 . T C 184 . DP=18;AF1=1;CI95=1,1;DP4=0,0,16,0;MQ=37;FQ=-52.7;QCHI2=0;PCHI2=0.996;PC2=3,3 GT:PL:GQ 1/1:110,24,0:99 1/1:110,24,0:99
9 7225369 . T G 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.00042,1,1 GT:PL:GQ 0/1:22,0,100:25 0/1:22,0,100:25
9 7225505 . TCCC TCC 6.77 . INDEL;DP=6;AF1=0.499;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=9.28;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,0,1,0.058 GT:PL:GQ 0/1:24,0,52:27 0/1:24,0,52:27
9 7226635 . A G 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=10,0,2,0;MQ=35;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.099,1,0.16 GT:PL:GQ 0/1:19,0,103:22 0/1:19,0,103:22
9 7227565 . T G 19.3 . DP=6;AF1=0.4995;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=22.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,4.3e-06,1,1 GT:PL:GQ 0/1:27,0,59:30 0/1:27,0,59:30
9 7228148 . A T 19.3 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=21.7;QCHI2=0;PCHI2=0.995;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:27,0,31:29 0/1:27,0,31:29
9 7229186 . G A 87.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:61,6,0:51 1/1:61,6,0:51
9 7229819 . A G 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 7230443 . G A 75.2 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=4,0,10,0;MQ=37;FQ=54.2;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,8.4e-05,1,0.25 GT:PL:GQ 0/1:55,0,43:46 0/1:55,0,43:46
9 7232456 . C CT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 7233301 . C T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 7233312 . G T 5.07 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=25;FQ=5.07;QCHI2=0;PCHI2=0.975;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:19,0,19:19 0/1:19,0,19:19
9 7233677 . G T 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 7234094 . G A 13.5 . DP=4;AF1=0.4992;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=16.2;QCHI2=0;PCHI2=0.991;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:24,0,31:26 0/1:24,0,31:26
9 7234844 . A G 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 7235458 . A C 15.4 . DP=6;AF1=0.4992;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,3.2e-06,1,0.34 GT:PL:GQ 0/1:25,0,59:28 0/1:25,0,59:28
9 7236069 . A G 19.3 . DP=6;AF1=0.4995;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=22.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,6.7e-05,1,1 GT:PL:GQ 0/1:27,0,59:30 0/1:27,0,59:30
9 7236320 . T G 81.3 . DP=10;AF1=0.5016;CI95=0.5,0.5;DP4=2,0,8,0;MQ=35;FQ=12.6;QCHI2=0;PCHI2=0.995;PC2=3,3;PV4=1,6.5e-05,0.24,0.27 GT:PL:GQ 0/1:58,0,22:25 0/1:58,0,22:25
9 7239386 . C T 186 . DP=8;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=37;FQ=-40.6;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:111,12,0:63 1/1:111,12,0:63
9 7239394 . T G 15.4 . DP=8;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,5.6e-06,1,1 GT:PL:GQ 0/1:25,0,81:28 0/1:25,0,81:28
9 7243190 . A G 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 7247891 . CT CTT 9.94 . INDEL;DP=30;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-38.3;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 7248322 . T C 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 7251766 . T G 35 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 7252908 . G A 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 7253390 . CA CAA 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 7253461 . C T 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 7255774 . G A 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 7256785 . G A 37 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:35,3,0:42 1/1:35,3,0:42
9 7258788 . T C 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 7260162 . T A 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 7267623 . C A 8.08 . DP=4;AF1=0.4982;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:21,0,31:24 0/1:21,0,31:24
9 7268383 . G A 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 7270478 . G T 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 7270848 . T G 3.82 . DP=4;AF1=0.4992;CI95=0.25,0.5;DP4=2,0,2,0;MQ=32;FQ=4.35;QCHI2=0;PCHI2=0.975;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:18,0,19:19 0/1:18,0,19:19
9 7270875 . T G 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 7273259 . T A 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 7273522 . G A 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 7273676 . CAA CA 27.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 7277792 . A C 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 7281660 . T C 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 7282721 . T TA 19.8 . INDEL;DP=4;AF1=0.5001;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.7;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:31,0,30:30 0/1:31,0,30:30
9 7283026 . C A 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 7285632 . A G 358 . DP=58;AF1=1;CI95=1,1;DP4=0,0,52,0;MQ=37;FQ=-107;QCHI2=0;PCHI2=1;PC2=3,3 GT:PL:GQ 1/1:197,78,0:99 1/1:197,78,0:99
9 7287024 . T C 33 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 7297766 . A G 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 7302448 . C T 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 7302621 . A G 27.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=27.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 7302918 . C A 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 7303604 . T C 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 7303810 . A C 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 7305751 . C T 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 7305809 . A C 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 7305815 . C G 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 7307868 . C T 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 7309219 . C A 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 7314440 . C T 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 7314700 . G A 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 7314706 . G C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 7314721 . T C 13.2 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 7316649 . A G 45.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:40,6,0:51 1/1:40,6,0:51
9 7317080 . T C 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 7317735 . T TC 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 7317871 . T G 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 7317984 . T C 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 7318971 . C A 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 7319535 . C A 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 7319625 . G T 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 7321292 . T G 13.2 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 7324877 . C T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 7327757 . T C 6.47 . DP=10;AF1=0.4975;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=8.93;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0.0026,1,1 GT:PL:GQ 0/1:20,0,100:23 0/1:20,0,100:23
9 7333203 . C A 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 7333790 . T G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 7334820 . T C 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=23;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 7336745 . C T 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 7337541 . C A 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 7346832 . C A 11.6 . DP=6;AF1=0.4987;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=14.4;QCHI2=0;PCHI2=0.99;PC2=3,3;PV4=1,0.00013,1,1 GT:PL:GQ 0/1:23,0,59:26 0/1:23,0,59:26
9 7348398 . T TA 33.5 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 7348526 . GTTT GTT 12 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12;QCHI2=0;PCHI2=0.994;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:27,0,27:27 0/1:27,0,27:27
9 7351247 . T G 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 7351628 . TG TGG 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 7352323 . TGGGA T 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 7354243 . T A 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 7355269 . T G 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 7355271 . T G 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 7355557 . T C 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 7358198 . T A 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 7360171 . T G 27.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=27.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 7362701 . G T 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 7363340 . T C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 7363348 . A C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 7363350 . A C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 7363995 . C A 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 7363997 . C A 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 7364898 . A C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 7368471 . T C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 7371636 . T C 3.79 . DP=6;AF1=0.496;CI95=0.25,0.5;DP4=4,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0.00072,1,1 GT:PL:GQ 0/1:18,0,59:21 0/1:18,0,59:21
9 7376218 . G C 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 7376305 . C A 27.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=27.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 7377028 . TGGG TGG 6.57 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=23;FQ=-38.3;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 7377163 . C T 25.3 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=26.1;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:30,0,31:30 0/1:30,0,31:30
9 7377603 . CAGA CA 19.8 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=19.8;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 7377618 . T G 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.0022,1,0.41 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 7377622 . T G 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 7381332 . T C 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 7382546 . T A 8.08 . DP=6;AF1=0.498;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,8.8e-05,1,0.12 GT:PL:GQ 0/1:21,0,59:24 0/1:21,0,59:24
9 7382553 . T C 3.79 . DP=6;AF1=0.496;CI95=0.25,0.5;DP4=4,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,5.9e-08,1,0.072 GT:PL:GQ 0/1:18,0,59:21 0/1:18,0,59:21
9 7382938 . A C 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,3.1e-07,1,1 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 7385049 . T C 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 7385798 . C T 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 7385828 . T G 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 7387704 . A T 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 7387825 . G C 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 7387950 . A G 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 7388880 . A C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=23;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 7389112 . A T 39 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 7389761 . A C 8.08 . DP=4;AF1=0.4982;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:21,0,31:24 0/1:21,0,31:24
9 7392495 . C G 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.0018,1,0.29 GT:PL:GQ 0/1:22,0,100:25 0/1:22,0,100:25
9 7393404 . C CT 3.99 . INDEL;DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=6.01;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,1,1,0.15 GT:PL:GQ 0/1:22,0,94:25 0/1:22,0,94:25
9 7393536 . TC T 12 . INDEL;DP=6;AF1=0.4995;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=14.9;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0,1,0.027 GT:PL:GQ 0/1:27,0,59:30 0/1:27,0,59:30
9 7393950 . A T 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 7396514 . A C 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 7398038 . C A 6.47 . DP=6;AF1=0.4975;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=8.93;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0.0022,1,0 GT:PL:GQ 0/1:20,0,59:23 0/1:20,0,59:23
9 7399095 . C T 44.7 . DP=6;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:40,9,0:57 1/1:40,9,0:57
9 7399222 . T C 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.29,1,1 GT:PL:GQ 0/1:28,0,55:31 0/1:28,0,55:31
9 7399324 . A C 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.1,1,1 GT:PL:GQ 0/1:22,0,58:25 0/1:22,0,58:25
9 7399504 . AT A 31.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 7399852 . GAA GA 3.99 . INDEL;DP=8;AF1=0.4984;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=6.01;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,0.29 GT:PL:GQ 0/1:22,0,81:25 0/1:22,0,81:25
9 7400700 . A C 11.6 . DP=4;AF1=0.4995;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=13.1;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:23,0,25:24 0/1:23,0,25:24
9 7401617 . A G 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 7401624 . T C 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 7403493 . A G 13.5 . DP=6;AF1=0.499;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.4;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,0.00012,1,0.3 GT:PL:GQ 0/1:24,0,59:27 0/1:24,0,59:27
9 7403929 . T G 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 7404291 . G T 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 7408944 . C A 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 7412844 . T G 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 7412855 . A C 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 7413782 . T G 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 7413790 . T G 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 7414449 . G T 8.08 . DP=4;AF1=0.4982;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:21,0,31:24 0/1:21,0,31:24
9 7417404 . A T 33 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 7418679 . G GC 33.5 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 7420499 . TGGGGGGG TGGGGGGGGG 17.5 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 7420667 . T C 13.5 . DP=8;AF1=0.499;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=16.4;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,0.00028,1,0.4 GT:PL:GQ 0/1:24,0,81:27 0/1:24,0,81:27
9 7421795 . T A 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 7421811 . G C 6.48 . DP=4;AF1=0.4983;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.59;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:20,0,25:22 0/1:20,0,25:22
9 7421834 . C T 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 7422519 . C T 33 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 7424627 . G C 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 7425691 . G A 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 7425786 . T C 99.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:67,6,0:51 1/1:67,6,0:51
9 7428201 . T G 19.3 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=21.7;QCHI2=0;PCHI2=0.995;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:27,0,31:29 0/1:27,0,31:29
9 7429106 . A G 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 7430279 . A C 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 7435166 . T C 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 7436458 . G A 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 7437146 . T C 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 7437162 . T C 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 7440047 . G T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 7440050 . G A 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 7440062 . G C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 7440132 . A C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 7440629 . A C 27.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=27.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 7441610 . A C 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 7441711 . C A 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 7441968 . A C 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 7443017 . C A 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 7447680 . A G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 7447857 . A C 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 7448751 . G C 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 7450271 . C T 9.8 . DP=6;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 7451033 . T A 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.00011,1,1 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 7451108 . C A 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,1.3e-06,1,0.11 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 7451297 . CAA CA 8.41 . INDEL;DP=10;AF1=0.4992;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=11.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,59:28 0/1:25,0,59:28
9 7451374 . TCC TC 127 . INDEL;DP=6;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-45;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:85,9,0:57 1/1:85,9,0:57
9 7452787 . T A 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=10,0,2,0;MQ=35;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.46,1,0.15 GT:PL:GQ 0/1:19,0,107:22 0/1:19,0,107:22
9 7453523 . T A 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.074,1,1 GT:PL:GQ 0/1:19,0,77:22 0/1:19,0,77:22
9 7453660 . A C 35 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 7454829 . T C 17.4 . DP=6;AF1=0.4994;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=20.3;QCHI2=0;PCHI2=0.994;PC2=3,3;PV4=1,0.058,1,1 GT:PL:GQ 0/1:26,0,59:29 0/1:26,0,59:29
9 7455022 . G T 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 7455050 . G T 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 7455078 . T G 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 7483156 . C CT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 7484404 . C A 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 7490888 . C A 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 7493698 . T C 3.61 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 7493699 . T C 3.61 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 7499528 . G T 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 7508117 . A G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 7508883 . A T 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 7508887 . A G 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 7509170 . C A 3.79 . DP=6;AF1=0.496;CI95=0.25,0.5;DP4=4,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,0.12 GT:PL:GQ 0/1:18,0,59:21 0/1:18,0,59:21
9 7509183 . A C 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 7509193 . T A 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,7.4e-05,1,1 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 7512124 . C A 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 7512247 . T G 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 7516515 . C A 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 7516561 . G T 6.47 . DP=6;AF1=0.4975;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=8.93;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0.00088,1,0.32 GT:PL:GQ 0/1:20,0,59:23 0/1:20,0,59:23
9 7517427 . T A 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 7527732 . T TC 25.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 7527773 . C T 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 7527816 . A C 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 7538287 . T C 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 7603190 . G A 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 7603511 . A T 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 7603589 . A ATC 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 7605077 . TCC TC 82 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-41.8;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:62,6,0:51 1/1:62,6,0:51
9 7605339 . G GA 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 7618501 . A G 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 7618909 . C A 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 7679328 . T C 33 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 7761815 . A C 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 7773976 . A G 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 7778066 . T C 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 7780819 . T C 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 7781433 . G T 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 7783172 . A C 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 7785993 . A C 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 7786309 . A G 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 7786782 . G GA 12 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=2,0,4,0;MQ=33;FQ=12;QCHI2=0;PCHI2=0.994;PC2=3,3;PV4=1,0.27,0.16,0.00024 GT:PL:GQ 0/1:27,0,27:27 0/1:27,0,27:27
9 7786791 . A C 25.3 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=26.1;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:30,0,31:30 0/1:30,0,31:30
9 7788209 . A G 27.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:31,6,0:51 1/1:31,6,0:51
9 7788495 . T C 39 . DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 7789128 . G T 15.4 . DP=8;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,8.9e-07,1,1 GT:PL:GQ 0/1:25,0,81:28 0/1:25,0,81:28
9 7789306 . G T 27.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=27.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 7789620 . TGGG TGG 6.77 . INDEL;DP=6;AF1=0.499;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=9.28;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,0.39,1,0.24 GT:PL:GQ 0/1:24,0,49:27 0/1:24,0,49:27
9 7789772 . G GA 8.41 . INDEL;DP=12;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=11.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,1,1,0.0055 GT:PL:GQ 0/1:25,0,79:28 0/1:25,0,79:28
9 7790443 . A C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 7791147 . C T 8.08 . DP=10;AF1=0.498;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,8.1e-05,1,1 GT:PL:GQ 0/1:21,0,100:24 0/1:21,0,100:24
9 7791692 . T C 3.61 . DP=10;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 7792016 . GAAA GAA 151 . INDEL;DP=16;AF1=1;CI95=0.75,1;DP4=0,0,10,0;MQ=37;FQ=-51.2;QCHI2=0;PCHI2=0.97;PC2=3,3 GT:PL:GQ 1/1:97,15,0:78 1/1:97,15,0:78
9 7792492 . T C 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:28,0,57:31 0/1:28,0,57:31
9 7792726 . A G 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.0042,1,1 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 7792749 . A G 76.7 . DP=6;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:56,9,0:57 1/1:56,9,0:57
9 7793788 . T TC 48 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-41.8;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:45,6,0:51 1/1:45,6,0:51
9 7794294 . A C 29 . DP=10;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 7795911 . A G 78.7 . DP=8;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=33;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:57,9,0:57 1/1:57,9,0:57
9 7796644 . C A 11.6 . DP=4;AF1=0.4989;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=14.4;QCHI2=0;PCHI2=0.989;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:23,0,31:25 0/1:23,0,31:25
9 7798432 . G T 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.38,1,0.2 GT:PL:GQ 0/1:28,0,54:31 0/1:28,0,54:31
9 7798869 . A C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 7798872 . T C 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 7802138 . C T 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 7808480 . G T 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 7809190 . T C 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=10,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.066,1,1 GT:PL:GQ 0/1:19,0,113:22 0/1:19,0,113:22
9 7809248 . A C 8.08 . DP=8;AF1=0.498;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0.0039,1,0.0019 GT:PL:GQ 0/1:21,0,81:24 0/1:21,0,81:24
9 7810071 . C T 60.7 . DP=8;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:48,9,0:57 1/1:48,9,0:57
9 7810740 . G T 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 7814921 . G C 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 7815262 . T C 21.3 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=23.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:28,0,31:29 0/1:28,0,31:29
9 7820217 . C A 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 7830319 . G C 27.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:31,6,0:51 1/1:31,6,0:51
9 7830675 . G C 49.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=32;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:42,6,0:51 1/1:42,6,0:51
9 7830685 . A T 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 7832124 . T G 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 7832714 . C A 11.6 . DP=4;AF1=0.4989;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=14.4;QCHI2=0;PCHI2=0.989;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:23,0,31:25 0/1:23,0,31:25
9 7833562 . TAA TA 8.41 . INDEL;DP=6;AF1=0.4992;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=11.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0.00011,1,1 GT:PL:GQ 0/1:25,0,59:28 0/1:25,0,59:28
9 7834129 . T G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 7840312 . G C 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 7841373 . G A 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=10,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.057,1,0.075 GT:PL:GQ 0/1:19,0,111:22 0/1:19,0,111:22
9 7841986 . CT C 145 . INDEL;DP=108;AF1=1;CI95=1,1;DP4=0,0,12,0;MQ=25;FQ=-54.3;QCHI2=0;PCHI2=0.984;PC2=3,3 GT:PL:GQ 1/1:94,18,0:75 1/1:94,18,0:75
9 7842129 . C G 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 7843700 . CAAA CAA 25.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 7846152 . T C 59.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:47,6,0:51 1/1:47,6,0:51
9 7846569 . C T 194 . DP=16;AF1=1;CI95=1,1;DP4=0,0,16,0;MQ=37;FQ=-52.7;QCHI2=0;PCHI2=0.996;PC2=3,3 GT:PL:GQ 1/1:115,24,0:99 1/1:115,24,0:99
9 7848114 . A C 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=10,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,3.8e-06,1,0.023 GT:PL:GQ 0/1:19,0,114:22 0/1:19,0,114:22
9 7849170 . A C 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 7849206 . A G 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 7877136 . G T 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 7877307 . A C 33 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 7879079 . A G 33 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 7903178 . T G 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 7903189 . G T 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 7938942 . C G 8.08 . DP=4;AF1=0.4982;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:21,0,31:24 0/1:21,0,31:24
9 7940803 . TG T 31.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 7942481 . A T 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 7944134 . C CT 25.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 7944161 . C A 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 7950432 . T C 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 7951754 . C CT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 7951778 . A G 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=32;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 7951783 . T A 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 7951811 . G T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 7954829 . T C 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 7955060 . C A 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 7955248 . C A 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 7973364 . T A 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 7975696 . G T 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 7975704 . A C 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 7980818 . CGG CG 27.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 8004468 . G T 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 8004469 . G T 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 8006798 . A G 19.1 . DP=44;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 8014815 . T A 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 8016558 . A C 37 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:35,3,0:42 1/1:35,3,0:42
9 8016754 . G T 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 8016771 . G T 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 8019285 . AT ATT 144 . INDEL;DP=10;AF1=0.5032;CI95=0.5,0.5;DP4=2,0,8,0;MQ=35;FQ=-3.64;QCHI2=0;PCHI2=0.991;PC2=3,3;PV4=1,1,0.24,1.2e-09 GT:PL:GQ 0/1:93,0,19:22 0/1:93,0,19:22
9 8020508 . A C 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 8022084 . A G 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 8030643 . G T 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 8032901 . A G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 8036615 . A C 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 8037513 . T C 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 8040970 . T C 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 8041406 . G A 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 8046039 . AT ATCT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 8047889 . T C 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 8049999 . C A 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 8052253 . C T 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 8053275 . T G 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 8053619 . CAT C 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 8058817 . CT C 17.8 . INDEL;DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.7;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:30,0,31:30 0/1:30,0,31:30
9 8059216 . A C 6.47 . DP=6;AF1=0.4975;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=8.93;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,1.4e-06,1,0.16 GT:PL:GQ 0/1:20,0,59:23 0/1:20,0,59:23
9 8060262 . G A 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 8097533 . A C 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.14,1,1 GT:PL:GQ 0/1:22,0,96:25 0/1:22,0,96:25
9 8097653 . G C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 8099718 . T G 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 8100563 . C T 27.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=27.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 8101927 . T C 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 8103961 . A C 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 8104038 . C G 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 8108555 . C G 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 8110938 . G A 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 8112143 . T C 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 8112719 . T G 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 8113726 . G C 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 8115146 . G A 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 8116381 . G T 15.4 . DP=8;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,1.3e-05,1,0.11 GT:PL:GQ 0/1:25,0,81:28 0/1:25,0,81:28
9 8116598 . G A 190 . DP=8;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=37;FQ=-40.6;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:113,12,0:63 1/1:113,12,0:63
9 8117002 . G T 39 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 8117034 . C A 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 8164135 . A C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 8164152 . C G 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 8167160 . A C 35 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 8203521 . A G 186 . DP=64;AF1=1;CI95=1,1;DP4=0,0,64,0;MQ=29;FQ=-125;QCHI2=0;PCHI2=1;PC2=3,3 GT:PL:GQ 1/1:111,96,0:99 1/1:111,96,0:99
9 8203634 . G GA 30 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-41.8;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:36,6,0:51 1/1:36,6,0:51
9 8204037 . C T 41.5 . DP=54;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=25;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:38,6,0:51 1/1:38,6,0:51
9 8204069 . A G 114 . DP=106;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=25;FQ=-40.6;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:75,12,0:63 1/1:75,12,0:63
9 8204072 . C A 57.2 . DP=106;AF1=0.5003;CI95=0.5,0.5;DP4=4,0,8,0;MQ=25;FQ=26.3;QCHI2=0;PCHI2=0.999;PC2=3,3;PV4=1,0.049,0.16,1 GT:PL:GQ 0/1:46,0,29:32 0/1:46,0,29:32
9 8204098 . T C 86 . DP=78;AF1=1;CI95=1,1;DP4=0,0,14,0;MQ=19;FQ=-49.7;QCHI2=0;PCHI2=0.992;PC2=3,3 GT:PL:GQ 1/1:61,21,0:87 1/1:61,21,0:87
9 8204113 . A G 33.5 . DP=132;AF1=0.5128;CI95=0.5,0.75;DP4=2,0,6,0;MQ=21;FQ=-6.45;QCHI2=0;PCHI2=0.963;PC2=3,3;PV4=1,0.0019,0.18,0.068 GT:PL:GQ 0/1:34,0,13:16 0/1:34,0,13:16
9 8244447 . G T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 8244469 . G C 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 8244474 . G C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 8556399 . ATC ATCTC 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 8730161 . C A 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 8741322 . ACC AC 27.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 8822279 . T C 17.1 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 8822283 . A G 5.07 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=25;FQ=5.07;QCHI2=0;PCHI2=0.975;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:19,0,19:19 0/1:19,0,19:19
9 8932431 . T C 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 8932441 . A AT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 8932467 . G A 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 9030134 . A C 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 9049389 . T G 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 9210946 . A T 55.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=25;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:45,6,0:51 1/1:45,6,0:51
9 9695509 . GCC GC 27.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 10038788 . G GA 25.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 10077006 . C T 3.61 . DP=10;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 10225574 . T C 7.12 . DP=4;AF1=0.7278;CI95=0.5,1;DP4=2,0,2,0;MQ=19;FQ=-24.2;QCHI2=1;PCHI2=0.793;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:19,0,2:3 0/1:19,0,2:3
9 10932914 . G A 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 11066478 . C G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 11066482 . T C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 11176289 . T G 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 11190250 . T G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 11207166 . TCC TCCC 212 . INDEL;DP=30;AF1=0.5;CI95=0.5,0.5;DP4=6,0,14,0;MQ=36;FQ=68.7;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,1,0.18,1 GT:PL:GQ 0/1:127,0,54:57 0/1:127,0,54:57
9 11208421 . A C 27.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=27.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 11208852 . C A 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 11210853 . T G 39 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 11210868 . T G 25.3 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=26.1;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:30,0,31:30 0/1:30,0,31:30
9 11211065 . A C 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 11211595 . A C 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 11212081 . C A 17.4 . DP=6;AF1=0.4994;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=20.3;QCHI2=0;PCHI2=0.994;PC2=3,3;PV4=1,0.41,1,1 GT:PL:GQ 0/1:26,0,42:29 0/1:26,0,42:29
9 11212283 . A T 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 11212703 . G C 23.3 . DP=8;AF1=0.4997;CI95=0.5,0.5;DP4=4,0,4,0;MQ=34;FQ=26.3;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0.008,0.067,1 GT:PL:GQ 0/1:29,0,54:32 0/1:29,0,54:32
9 11215710 . C G 37.3 . DP=8;AF1=0.5007;CI95=0.5,0.5;DP4=2,0,6,0;MQ=37;FQ=18.3;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,3.5e-06,1,1 GT:PL:GQ 0/1:36,0,25:28 0/1:36,0,25:28
9 11215946 . T C 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 11218934 . A G 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.046,1,1 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 11219653 . C G 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 11220031 . G A 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 11220036 . G C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 11220039 . G C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 11220567 . C T 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 11220569 . C T 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 11221727 . T C 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 11222023 . C T 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 11223426 . C T 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 11223722 . A G 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,7.1e-07,1,1 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 11224250 . T C 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 11224428 . G C 23.3 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=24.8;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:29,0,31:30 0/1:29,0,31:30
9 11224714 . T G 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 11225258 . G T 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 11225263 . G T 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 11226248 . G A 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 11226589 . G C 15.4 . DP=8;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0.00042,1,1 GT:PL:GQ 0/1:25,0,81:28 0/1:25,0,81:28
9 11227509 . CT CTT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 11227512 . G T 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 11227668 . T C 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=18;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 11228749 . C T 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 11230339 . A G 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=32;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 11230829 . A C 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 11230843 . T G 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 11230982 . T C 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 11231831 . A G 65.2 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=6,0,4,0;MQ=37;FQ=68.2;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,0.015,1,1 GT:PL:GQ 0/1:50,0,78:53 0/1:50,0,78:53
9 11231959 . C G 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 11232130 . T G 3.79 . DP=6;AF1=0.496;CI95=0.25,0.5;DP4=4,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,2.9e-05,1,1 GT:PL:GQ 0/1:18,0,59:21 0/1:18,0,59:21
9 11232578 . T TA 9.94 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 11232596 . A G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 11235720 . TGA T 19.8 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=19.8;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 11235865 . G C 9.8 . DP=8;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,1.6e-06,1,0.022 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 11237047 . G C 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 11238230 . A G 5.03 . DP=6;AF1=0.4968;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.00014,1,1 GT:PL:GQ 0/1:19,0,59:22 0/1:19,0,59:22
9 11239613 . A C 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.053,1,0.39 GT:PL:GQ 0/1:19,0,79:22 0/1:19,0,79:22
9 11239815 . C G 13.5 . DP=8;AF1=0.499;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=16.4;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,0.00016,1,0.15 GT:PL:GQ 0/1:24,0,81:27 0/1:24,0,81:27
9 11240226 . TCC TC 8.41 . INDEL;DP=6;AF1=0.4992;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=11.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,0.013 GT:PL:GQ 0/1:25,0,59:28 0/1:25,0,59:28
9 11241462 . T G 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=33;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,4.1e-07,1,1 GT:PL:GQ 0/1:28,0,49:31 0/1:28,0,49:31
9 11241943 . C G 5.03 . DP=6;AF1=0.4968;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,5.7e-05,1,0 GT:PL:GQ 0/1:19,0,59:22 0/1:19,0,59:22
9 11242243 . A G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 11242814 . G T 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 11243624 . T C 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 11243927 . GT GTT 208 . INDEL;DP=16;AF1=0.5;CI95=0.5,0.5;DP4=4,0,12,0;MQ=37;FQ=38.7;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:125,0,39:42 0/1:125,0,39:42
9 11244173 . G A 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 11244341 . GAAA GAA 12 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12;QCHI2=0;PCHI2=0.994;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:27,0,27:27 0/1:27,0,27:27
9 11244600 . G A 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,6e-07,1,1 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 11245664 . T C 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.034,1,0.39 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 11246544 . T C 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.15,1,0.14 GT:PL:GQ 0/1:22,0,100:25 0/1:22,0,100:25
9 11247128 . A G 27.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=27.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 11247765 . C T 87.2 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=6,0,8,0;MQ=37;FQ=90.2;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,2.4e-09,1,1 GT:PL:GQ 0/1:61,0,74:64 0/1:61,0,74:64
9 11247853 . A C 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 11248339 . C G 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 11249520 . T C 138 . DP=10;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=37;FQ=-40.6;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:87,12,0:63 1/1:87,12,0:63
9 11249570 . C T 21.1 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 11249705 . T G 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 11251125 . C T 39.2 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=4,0,4,0;MQ=37;FQ=42.2;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,7.8e-06,1,1 GT:PL:GQ 0/1:37,0,56:40 0/1:37,0,56:40
9 11251360 . C A 8.08 . DP=8;AF1=0.498;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0.22,1,1 GT:PL:GQ 0/1:21,0,67:24 0/1:21,0,67:24
9 11252238 . CTT CT 27.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 11253246 . A C 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 11257152 . C A 5.03 . DP=6;AF1=0.4968;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,7.9e-05,1,0.44 GT:PL:GQ 0/1:19,0,59:22 0/1:19,0,59:22
9 11258188 . T C 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 11262453 . T G 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 11265252 . A G 35 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 11268617 . T C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 11268637 . G C 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 11268640 . A G 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 11269039 . T C 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 11269049 . T G 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 11269365 . C G 9.56 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 11269377 . G T 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 11272140 . G GA 12 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12;QCHI2=0;PCHI2=0.994;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:27,0,27:27 0/1:27,0,27:27
9 11272846 . GAAA GAA 25.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 11274865 . A C 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 11276094 . A C 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 11279399 . A AT 13.9 . INDEL;DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.8;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1,1,0.024 GT:PL:GQ 0/1:28,0,57:31 0/1:28,0,57:31
9 11281226 . A C 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 11283695 . A AG 17.8 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=17.8;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:30,0,30:30 0/1:30,0,30:30
9 11284858 . A C 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 11286889 . A C 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 11289366 . A C 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 11289697 . C G 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 11290351 . A G 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 11294067 . T A 19.3 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=21.7;QCHI2=0;PCHI2=0.995;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:27,0,31:29 0/1:27,0,31:29
9 11298732 . C CA 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 11298951 . A G 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 11300566 . CTT CT 8.41 . INDEL;DP=6;AF1=0.4992;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=11.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,0.41 GT:PL:GQ 0/1:25,0,59:28 0/1:25,0,59:28
9 11301053 . A ATC 19.8 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=19.8;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 11301340 . C A 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 11301542 . C A 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 11302199 . C A 19.3 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=21.7;QCHI2=0;PCHI2=0.995;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:27,0,31:29 0/1:27,0,31:29
9 11302371 . C G 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 11302612 . GTTTTTTTTTTTTTT GTTTTTTTTTTTTTTTTT 3.83 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 11303028 . C G 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 11303100 . A T 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 11308641 . GT G 43.7 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=4,0,4,0;MQ=37;FQ=46.7;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,0,1,0.001 GT:PL:GQ 0/1:43,0,56:46 0/1:43,0,56:46
9 11308683 . G T 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 11308790 . TTCTCTCTCTCTCTCTCT TTCTCTCTCTCTCTCT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 11309365 . G T 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 11310983 . TAA TA 27.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 11312514 . A C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 11312540 . T G 3.79 . DP=6;AF1=0.496;CI95=0.25,0.5;DP4=4,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,2.4e-06,1,0.0078 GT:PL:GQ 0/1:18,0,59:21 0/1:18,0,59:21
9 11312625 . A ATG 154 . INDEL;DP=16;AF1=0.5;CI95=0.5,0.5;DP4=4,0,8,0;MQ=37;FQ=42.7;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:98,0,41:44 0/1:98,0,41:44
9 11313532 . A C 27.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=27.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 11314517 . C A 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 11314590 . G T 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 11317282 . G C 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 11317825 . A C 13.5 . DP=8;AF1=0.499;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=16.4;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,0.067,1,0.16 GT:PL:GQ 0/1:24,0,81:27 0/1:24,0,81:27
9 11318773 . G C 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 11319226 . A G 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 11321485 . A G 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 11321600 . A G 19.3 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=21.7;QCHI2=0;PCHI2=0.995;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:27,0,31:29 0/1:27,0,31:29
9 11322596 . A C 8.08 . DP=8;AF1=0.498;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0.096,1,1 GT:PL:GQ 0/1:21,0,57:24 0/1:21,0,57:24
9 11322664 . G T 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 11322812 . T G 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 11322819 . T G 25.3 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=26.1;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:30,0,31:30 0/1:30,0,31:30
9 11322986 . C A 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 11323049 . A G 99.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:67,6,0:51 1/1:67,6,0:51
9 11323850 . C T 3.79 . DP=12;AF1=0.496;CI95=0.25,0.5;DP4=10,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,6e-08,1,0.3 GT:PL:GQ 0/1:18,0,114:21 0/1:18,0,114:21
9 11324844 . C G 29 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 11325005 . A G 19.3 . DP=8;AF1=0.4997;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=21.7;QCHI2=0;PCHI2=0.995;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:27,0,31:29 0/1:27,0,31:29
9 11325867 . C G 17.4 . DP=28;AF1=0.4994;CI95=0.5,0.5;DP4=16,0,8,0;MQ=21;FQ=20.3;QCHI2=0;PCHI2=0.994;PC2=3,3;PV4=1,3.1e-08,0.47,1 GT:PL:GQ 0/1:26,0,71:29 0/1:26,0,71:29
9 11326199 . TGG TG 64 . INDEL;DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=31;FQ=-41.8;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:53,6,0:51 1/1:53,6,0:51
9 11326225 . C G 29.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=32;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:32,6,0:51 1/1:32,6,0:51
9 11327285 . C T 3.79 . DP=8;AF1=0.496;CI95=0.25,0.5;DP4=6,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0.00034,1,1 GT:PL:GQ 0/1:18,0,81:21 0/1:18,0,81:21
9 11327355 . A C 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 11327603 . G T 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 11327853 . C A 4.83 . DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 11328389 . G C 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.042,1,1 GT:PL:GQ 0/1:22,0,99:25 0/1:22,0,99:25
9 11328391 . G C 8.08 . DP=10;AF1=0.498;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0.059,1,1 GT:PL:GQ 0/1:21,0,97:24 0/1:21,0,97:24
9 11328959 . A G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 11332511 . C A 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 11332515 . C A 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 11332652 . ACC AC 13.9 . INDEL;DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=15.9;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:28,0,31:29 0/1:28,0,31:29
9 11334678 . T G 71.2 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=6,0,4,0;MQ=37;FQ=74.2;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,0.16,1,0.27 GT:PL:GQ 0/1:53,0,78:56 0/1:53,0,78:56
9 11334777 . T C 6.47 . DP=8;AF1=0.4975;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=8.93;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0.1,1,0.23 GT:PL:GQ 0/1:20,0,54:23 0/1:20,0,54:23
9 11334789 . G T 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 11334900 . T C 19.1 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 11335437 . C CT 13.9 . INDEL;DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.8;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1,1,0.25 GT:PL:GQ 0/1:28,0,56:31 0/1:28,0,56:31
9 11335548 . G T 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.0001,1,1 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 11335566 . T G 3.79 . DP=6;AF1=0.496;CI95=0.25,0.5;DP4=4,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,6.6e-08,1,2.5e-05 GT:PL:GQ 0/1:18,0,59:21 0/1:18,0,59:21
9 11335601 . A T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 11336960 . CTT C 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 11337847 . T C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 11338297 . T G 27.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=27.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 11338609 . T G 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 11340460 . C T 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 11341218 . T C 49.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=32;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:42,6,0:51 1/1:42,6,0:51
9 11341281 . C A 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 11341284 . C A 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 11341296 . C G 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 11341484 . C A 27.3 . DP=4;AF1=0.5006;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,25:27 0/1:31,0,25:27
9 11342764 . A C 25.3 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=26.1;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:30,0,31:30 0/1:30,0,31:30
9 11342968 . T G 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 11343631 . T G 6.47 . DP=6;AF1=0.4975;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=8.93;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,0.013 GT:PL:GQ 0/1:20,0,59:23 0/1:20,0,59:23
9 11343767 . T G 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 11344048 . C T 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 11344451 . G A 29 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 11344527 . G A 19.3 . DP=6;AF1=0.4995;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=22.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,6.7e-05,1,1 GT:PL:GQ 0/1:27,0,59:30 0/1:27,0,59:30
9 11345542 . A G 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,1.4e-07,1,1 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 11345695 . T C 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 11347023 . GCCCC GCCCCC 48 . INDEL;DP=8;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-41.8;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:45,6,0:51 1/1:45,6,0:51
9 11348088 . C CA 33.5 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 11349581 . CTT CTTT 13.9 . INDEL;DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.8;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1,1,0.013 GT:PL:GQ 0/1:28,0,52:31 0/1:28,0,52:31
9 11349592 . G A 149 . DP=6;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:92,9,0:57 1/1:92,9,0:57
9 11349967 . A C 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 11351065 . A G 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 11351068 . A G 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 11351742 . T G 19.3 . DP=6;AF1=0.4995;CI95=0.5,0.5;DP4=4,0,2,0;MQ=33;FQ=22.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.17,1,0.47 GT:PL:GQ 0/1:27,0,49:30 0/1:27,0,49:30
9 11352918 . T C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 11353148 . A C 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 11354949 . G T 6.47 . DP=6;AF1=0.4975;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=8.93;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0.00031,1,3.3e-05 GT:PL:GQ 0/1:20,0,59:23 0/1:20,0,59:23
9 11355488 . T A 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 11355768 . AG A 31.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 11357982 . G A 139 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=18,0,12,0;MQ=37;FQ=142;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,6.8e-07,1,1 GT:PL:GQ 0/1:87,0,144:90 0/1:87,0,144:90
9 11358253 . T C 23.3 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=24.8;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:29,0,31:30 0/1:29,0,31:30
9 11358931 . CCTCT CCT 8.41 . INDEL;DP=12;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=11.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,0.068 GT:PL:GQ 0/1:25,0,81:28 0/1:25,0,81:28
9 11359368 . A G 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=10,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.058,1,1 GT:PL:GQ 0/1:19,0,113:22 0/1:19,0,113:22
9 11359942 . GAAAA GAA 5.28 . INDEL;DP=26;AF1=0.4987;CI95=0.5,0.5;DP4=20,0,4,0;MQ=36;FQ=7.58;QCHI2=0;PCHI2=0.99;PC2=3,3;PV4=1,1,0.00015,0.062 GT:PL:GQ 0/1:23,0,150:26 0/1:23,0,150:26
9 11362813 . T C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 11372215 . G C 90.7 . DP=106;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=33;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:63,9,0:57 1/1:63,9,0:57
9 11373418 . AT ATCT 264 . INDEL;DP=14;AF1=1;CI95=1,1;DP4=0,0,14,0;MQ=37;FQ=-57.3;QCHI2=0;PCHI2=0.992;PC2=3,3 GT:PL:GQ 1/1:154,21,0:87 1/1:154,21,0:87
9 11374610 . T TC 77.7 . INDEL;DP=52;AF1=0.5;CI95=0.5,0.5;DP4=4,0,8,0;MQ=30;FQ=42.7;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:60,0,41:44 0/1:60,0,41:44
9 11375221 . CTTTTT CTTTTTT,CTTTTTTT 132 . INDEL;DP=172;AF1=1;CI95=1,1;DP4=0,0,144,0;MQ=37;FQ=-130;QCHI2=0;PCHI2=1;PC2=3,3 GT:PL:GQ 1/1:88,211,0,57,146,51:99 1/1:88,211,0,57,146,51:99
9 11437737 . C CT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 11488571 . G C 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 11495111 . C T 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 11496605 . C A 8.08 . DP=4;AF1=0.4982;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:21,0,31:24 0/1:21,0,31:24
9 11497212 . G A 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.044,1,0.32 GT:PL:GQ 0/1:19,0,79:22 0/1:19,0,79:22
9 11498850 . T C 17.4 . DP=6;AF1=0.4994;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=20.3;QCHI2=0;PCHI2=0.994;PC2=3,3;PV4=1,0.13,1,0.16 GT:PL:GQ 0/1:26,0,58:29 0/1:26,0,58:29
9 11498887 . AG A 17.8 . INDEL;DP=6;AF1=0.501;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.45;QCHI2=0;PCHI2=0.994;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:30,0,23:25 0/1:30,0,23:25
9 11499010 . A C 9.8 . DP=8;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=33;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.00018,1,1 GT:PL:GQ 0/1:22,0,49:25 0/1:22,0,49:25
9 11499891 . T C 11.6 . DP=8;AF1=0.4987;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=14.4;QCHI2=0;PCHI2=0.99;PC2=3,3;PV4=1,0.1,1,1 GT:PL:GQ 0/1:23,0,77:26 0/1:23,0,77:26
9 11501095 . T TC 13.9 . INDEL;DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.8;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:28,0,57:31 0/1:28,0,57:31
9 11504313 . C T 29 . DP=54;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 11508805 . T G 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 11523919 . GTT GTTT 29.5 . INDEL;DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:35,3,0:42 1/1:35,3,0:42
9 11529520 . C T 19.4 . DP=4;AF1=0.5027;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.19;QCHI2=0;PCHI2=0.986;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:27,0,19:21 0/1:27,0,19:21
9 11530293 . G GA 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 11531064 . A T 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 11531579 . C T 45.5 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:40,6,0:51 1/1:40,6,0:51
9 11531658 . T C 5.07 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=25;FQ=5.07;QCHI2=0;PCHI2=0.975;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:19,0,19:19 0/1:19,0,19:19
9 11532828 . TA T 132 . INDEL;DP=16;AF1=0.5032;CI95=0.5,0.5;DP4=2,0,10,0;MQ=33;FQ=-3.64;QCHI2=0;PCHI2=0.991;PC2=3,3;PV4=1,1,0.16,0.15 GT:PL:GQ 0/1:87,0,19:22 0/1:87,0,19:22
9 11534117 . T C 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 11535730 . T G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 11535736 . T G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 11535807 . G T 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 11538860 . T G 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 11538864 . T G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 11542297 . T G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 11554130 . A C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 11569190 . AAGA AAGAGA 19.8 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=19.8;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 11583090 . C A 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 11583569 . A C 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 11584034 . TG T 31.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 11584044 . C A 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 11584607 . A C 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=31;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,6e-07,1,0.072 GT:PL:GQ 0/1:28,0,40:31 0/1:28,0,40:31
9 11590748 . TCC TC 27.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 11590967 . T G 39 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 11592258 . C A 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 11592290 . C T 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 11593666 . C A 17.1 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 11594778 . A G 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 11599327 . G A 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 11602206 . A T 3.8 . DP=4;AF1=0.4968;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.63;QCHI2=0;PCHI2=0.979;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:18,0,25:20 0/1:18,0,25:20
9 11603414 . G T 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 11604909 . GT G 17.8 . INDEL;DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.7;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:30,0,31:30 0/1:30,0,31:30
9 11605079 . T C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 11606817 . A T 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=10,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,5.6e-06,1,1 GT:PL:GQ 0/1:19,0,114:22 0/1:19,0,114:22
9 11607471 . T G 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=18;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 11608455 . C G 17.4 . DP=6;AF1=0.4994;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=20.3;QCHI2=0;PCHI2=0.994;PC2=3,3;PV4=1,0.00056,1,0.057 GT:PL:GQ 0/1:26,0,59:29 0/1:26,0,59:29
9 11610046 . G T 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 11610487 . G T 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 11612922 . ACTCT ACT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 11615675 . C A 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 11615705 . C A 27.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=27.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 11616318 . T A 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 11616565 . G C 33 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 11618574 . A C 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 11618579 . A C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 11621643 . C CT 25.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 11625269 . G T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 11631905 . A C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 11634724 . A C 39 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 11637038 . A C 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 11639718 . T TC 84 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-41.8;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:63,6,0:51 1/1:63,6,0:51
9 11645043 . G T 39 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 11650263 . CAAA CAA 25.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 11652471 . A T 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 11653232 . G C 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 11653647 . T A 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.0067,1,0.17 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 11674095 . C A 33 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 11678108 . T G 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 11686538 . G T 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 11686547 . T C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 11690830 . T G 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 11690838 . T G 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 11692314 . GAA GAAA 31.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 11710104 . G T 27.3 . DP=4;AF1=0.503;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.989;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:31,0,19:22 0/1:31,0,19:22
9 11721951 . C A 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 11722405 . G T 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 11724789 . TGG TG 27.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 11725660 . T G 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=32;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 11725667 . T A 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 11725678 . T G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 11725746 . G A 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.00051,1,1 GT:PL:GQ 0/1:22,0,100:25 0/1:22,0,100:25
9 11732635 . G T 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 11733446 . T G 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 11741585 . AGG AG 27.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 11746011 . T C 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 11784633 . C T 8.08 . DP=4;AF1=0.4982;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:21,0,31:24 0/1:21,0,31:24
9 11785466 . G A 75.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:55,6,0:51 1/1:55,6,0:51
9 11786000 . TAA TA 27.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 11786199 . A T 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 11786581 . G T 15.4 . DP=6;AF1=0.4992;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,1.8e-07,1,0 GT:PL:GQ 0/1:25,0,59:28 0/1:25,0,59:28
9 11786657 . A AG 33.5 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 11786715 . CA CAA 19.8 . INDEL;DP=4;AF1=0.5002;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=15.9;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:31,0,28:29 0/1:31,0,28:29
9 11787873 . A C 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 11787960 . A T 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 11788625 . ACCC ACCCC 25.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 11789382 . G A 190 . DP=24;AF1=1;CI95=1,1;DP4=0,0,22,0;MQ=36;FQ=-61.7;QCHI2=0;PCHI2=0.999;PC2=3,3 GT:PL:GQ 1/1:113,33,0:99 1/1:113,33,0:99
9 11789405 . G A 23 . DP=32;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 11792480 . G A 17.4 . DP=8;AF1=0.4994;CI95=0.5,0.5;DP4=4,0,4,0;MQ=34;FQ=20.3;QCHI2=0;PCHI2=0.994;PC2=3,3;PV4=1,3.5e-09,0.067,0.2 GT:PL:GQ 0/1:26,0,56:29 0/1:26,0,56:29
9 11792487 . A C 35.2 . DP=8;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,4,0;MQ=34;FQ=38.3;QCHI2=0;PCHI2=0.999;PC2=3,3;PV4=1,1.3e-07,0.067,0.21 GT:PL:GQ 0/1:35,0,56:38 0/1:35,0,56:38
9 11792946 . G C 7.84 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 11797030 . G T 25.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:30,6,0:51 1/1:30,6,0:51
9 11797467 . G A 130 . DP=8;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=37;FQ=-40.6;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:83,12,0:63 1/1:83,12,0:63
9 11797758 . G A 94.4 . DP=8;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=37;FQ=-40.6;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:65,12,0:63 1/1:65,12,0:63
9 11798390 . C T 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 11798634 . T C 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=10,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.0053,1,1 GT:PL:GQ 0/1:19,0,114:22 0/1:19,0,114:22
9 11798916 . TAGAGA TAGAGAGA 19.8 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=19.8;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 11799195 . C T 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 11799596 . CT CTT 276 . INDEL;DP=18;AF1=1;CI95=1,1;DP4=0,0,18,0;MQ=36;FQ=-63.3;QCHI2=0;PCHI2=0.998;PC2=3,3 GT:PL:GQ 1/1:160,27,0:99 1/1:160,27,0:99
9 11799771 . C T 3.61 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 11800052 . T G 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 11800555 . C G 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 11800703 . A G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 11800708 . T C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 11800727 . C T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 11800782 . T C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 11800791 . T G 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 11802457 . C A 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 11803051 . G GA 19.8 . INDEL;DP=6;AF1=0.5001;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.7;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,30:30 0/1:31,0,30:30
9 11803086 . TGGG TGG 25.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 11803105 . T C 31 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:32,3,0:42 1/1:32,3,0:42
9 11803339 . A G,T 11.4 . DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:34,15,12,22,0,19:42 1/1:34,15,12,22,0,19:42
9 11803468 . G A 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 11803816 . G A 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 11803985 . A G 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.00093,1,0.022 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 11804340 . C A 6.47 . DP=8;AF1=0.4975;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=8.93;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,2.5e-07,1,1 GT:PL:GQ 0/1:20,0,81:23 0/1:20,0,81:23
9 11804546 . GC G 31.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 11805249 . T C 13.5 . DP=16;AF1=0.499;CI95=0.5,0.5;DP4=10,0,4,0;MQ=37;FQ=16.4;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,0.00071,1,0.4 GT:PL:GQ 0/1:24,0,110:27 0/1:24,0,110:27
9 11805459 . C G 6.47 . DP=10;AF1=0.4975;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=8.93;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0.0029,1,1 GT:PL:GQ 0/1:20,0,100:23 0/1:20,0,100:23
9 11805583 . A C 11.6 . DP=8;AF1=0.4987;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=14.4;QCHI2=0;PCHI2=0.99;PC2=3,3;PV4=1,4.1e-05,1,0.012 GT:PL:GQ 0/1:23,0,81:26 0/1:23,0,81:26
9 11805838 . C CT 324 . INDEL;DP=34;AF1=1;CI95=1,1;DP4=0,0,30,0;MQ=37;FQ=-81.3;QCHI2=0;PCHI2=1;PC2=3,3 GT:PL:GQ 1/1:184,45,0:99 1/1:184,45,0:99
9 11806341 . G T 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 11809558 . C T 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 11823251 . T G 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 11864818 . T G 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 11864820 . G GT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 11865433 . T G 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 11887758 . T G 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 11890932 . A G 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=20;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 11897027 . C A 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 11897034 . T G 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 11897039 . C T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 11898775 . G A 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 11903399 . A G 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 11904555 . TGG TG 27.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 11908774 . A C 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 11911963 . T C 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 11912144 . C T 183 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=4,0,12,0;MQ=36;FQ=58.2;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,3.1e-05,0.21,0.13 GT:PL:GQ 0/1:109,0,45:48 0/1:109,0,45:48
9 11913237 . A C 15.4 . DP=6;AF1=0.4992;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0.00073,1,1 GT:PL:GQ 0/1:25,0,59:28 0/1:25,0,59:28
9 11913672 . TCA T 19.8 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=19.8;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 11913927 . C A 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 11914723 . T C 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 11914867 . T G 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 11918176 . A C 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 11924235 . C A 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 11964608 . T G 3.8 . DP=4;AF1=0.4968;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.63;QCHI2=0;PCHI2=0.979;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:18,0,25:20 0/1:18,0,25:20
9 11968108 . A C 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,1.4e-07,1,1 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 11968712 . CCTCT CCTCTCT 141 . INDEL;DP=8;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-45;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:92,9,0:57 1/1:92,9,0:57
9 11968860 . T C 23.3 . DP=8;AF1=0.5001;CI95=0.5,0.5;DP4=2,0,4,0;MQ=37;FQ=22.2;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,7.5e-05,1,0 GT:PL:GQ 0/1:29,0,28:28 0/1:29,0,28:28
9 11969080 . T G 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=10,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.022,1,1 GT:PL:GQ 0/1:19,0,113:22 0/1:19,0,113:22
9 11969466 . A C 15.4 . DP=8;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,3.8e-05,1,1 GT:PL:GQ 0/1:25,0,81:28 0/1:25,0,81:28
9 11969470 . G T 15.4 . DP=8;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,1.1e-05,1,1 GT:PL:GQ 0/1:25,0,81:28 0/1:25,0,81:28
9 11969937 . G T 107 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=10,0,6,0;MQ=36;FQ=110;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,9.9e-05,1,0.013 GT:PL:GQ 0/1:71,0,105:74 0/1:71,0,105:74
9 11970461 . C A 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 11971010 . C T 17.4 . DP=10;AF1=0.4994;CI95=0.5,0.5;DP4=6,0,4,0;MQ=33;FQ=20.3;QCHI2=0;PCHI2=0.994;PC2=3,3;PV4=1,0.0011,1,0.11 GT:PL:GQ 0/1:26,0,56:29 0/1:26,0,56:29
9 11971848 . G C 15.4 . DP=8;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0.013,1,0.17 GT:PL:GQ 0/1:25,0,81:28 0/1:25,0,81:28
9 11973783 . TGGG TGG 21.5 . INDEL;DP=14;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 11975932 . A T 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 11976090 . A T 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 11976481 . A C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 11976485 . T A 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 11976494 . G T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 11978326 . G A 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=23;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 11981228 . C A 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 11982194 . CTT CT 13.9 . INDEL;DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=15.9;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:28,0,31:29 0/1:28,0,31:29
9 11984436 . TGTTC T 13.9 . INDEL;DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.8;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0,1,3.3e-05 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 11985052 . G A 6.47 . DP=6;AF1=0.4975;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=8.93;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0.075,1,1 GT:PL:GQ 0/1:20,0,58:23 0/1:20,0,58:23
9 11985060 . TA T 146 . INDEL;DP=14;AF1=0.5;CI95=0.5,0.5;DP4=6,0,8,0;MQ=37;FQ=74.7;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,1,1,0.00016 GT:PL:GQ 0/1:94,0,57:60 0/1:94,0,57:60
9 11985318 . G T 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.0019,1,1 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 11986650 . A C 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 11989523 . A G 53.2 . DP=8;AF1=0.5004;CI95=0.5,0.5;DP4=2,0,4,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.999;PC2=3,3;PV4=1,0.0036,1,1 GT:PL:GQ 0/1:44,0,28:31 0/1:44,0,28:31
9 11990365 . C CT 27.7 . INDEL;DP=26;AF1=0.4999;CI95=0.5,0.5;DP4=8,0,4,0;MQ=35;FQ=30.7;QCHI2=0;PCHI2=0.999;PC2=3,3;PV4=1,1,0.014,0.049 GT:PL:GQ 0/1:35,0,73:38 0/1:35,0,73:38
9 11990706 . A G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 11992928 . G A 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.00021,1,0.00011 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 11992968 . G T 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 11993639 . A C 51.2 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=12,0,4,0;MQ=37;FQ=54.2;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,1.2e-06,1,1 GT:PL:GQ 0/1:43,0,125:46 0/1:43,0,125:46
9 11994063 . A AGG 51.7 . INDEL;DP=18;AF1=0.5;CI95=0.5,0.5;DP4=12,0,6,0;MQ=36;FQ=54.7;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,1,0.017,3.6e-07 GT:PL:GQ 0/1:47,0,116:50 0/1:47,0,116:50
9 11995379 . T G 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,1.1e-05,1,0.28 GT:PL:GQ 0/1:22,0,100:25 0/1:22,0,100:25
9 11996792 . T C 8.08 . DP=8;AF1=0.498;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0.29,1,1 GT:PL:GQ 0/1:21,0,72:24 0/1:21,0,72:24
9 11999002 . T C 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 11999056 . T C 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=10,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.14,1,0.2 GT:PL:GQ 0/1:19,0,114:22 0/1:19,0,114:22
9 12003460 . AC A 71.7 . INDEL;DP=6;AF1=0.5004;CI95=0.5,0.5;DP4=2,0,4,0;MQ=37;FQ=16.8;QCHI2=0;PCHI2=0.999;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:57,0,28:31 0/1:57,0,28:31
9 12003647 . G C 21.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:28,6,0:51 1/1:28,6,0:51
9 12006610 . T G 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.00011,1,1 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 12007005 . A C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 12007042 . A C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 12009455 . T G 41 . DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 12009716 . G GC 33.5 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 12010331 . T C 29 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 12010347 . A C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 12011710 . CTT CT 13.9 . INDEL;DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=15.9;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:28,0,31:29 0/1:28,0,31:29
9 12013177 . A C 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 12014608 . A T 5.03 . DP=10;AF1=0.4968;CI95=0.5,0.5;DP4=8,0,2,0;MQ=33;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.00016,1,0.45 GT:PL:GQ 0/1:19,0,83:22 0/1:19,0,83:22
9 12014872 . ATTT ATTTT 25.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 12017505 . C G 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 12020196 . C T 41.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:38,6,0:51 1/1:38,6,0:51
9 12025028 . T A 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 12025483 . T G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 12026123 . T C 6.47 . DP=6;AF1=0.4975;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=8.93;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,9.4e-08,1,0.26 GT:PL:GQ 0/1:20,0,59:23 0/1:20,0,59:23
9 12026808 . T A 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 12027224 . A G 23.3 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=24.8;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:29,0,31:30 0/1:29,0,31:30
9 12028341 . G GA 19.8 . INDEL;DP=4;AF1=0.5001;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.7;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:31,0,30:30 0/1:31,0,30:30
9 12028777 . C T 19.3 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=21.7;QCHI2=0;PCHI2=0.995;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:27,0,31:29 0/1:27,0,31:29
9 12028860 . G A 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 12037115 . TA T 6.77 . INDEL;DP=8;AF1=0.499;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=9.28;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,0,1,0.1 GT:PL:GQ 0/1:24,0,81:27 0/1:24,0,81:27
9 12037956 . C G 11.6 . DP=8;AF1=0.4987;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=14.4;QCHI2=0;PCHI2=0.99;PC2=3,3;PV4=1,3.4e-06,1,1 GT:PL:GQ 0/1:23,0,81:26 0/1:23,0,81:26
9 12042760 . A C 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 12046088 . A C 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 12046104 . A C 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 12046528 . CCT CCTCT 264 . INDEL;DP=14;AF1=1;CI95=1,1;DP4=0,0,14,0;MQ=37;FQ=-57.3;QCHI2=0;PCHI2=0.992;PC2=3,3 GT:PL:GQ 1/1:154,21,0:87 1/1:154,21,0:87
9 12053466 . GC G 31.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 12057795 . T C 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 12058711 . T A 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 12060400 . T C 31 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:32,3,0:42 1/1:32,3,0:42
9 12060703 . A G 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 12061773 . A T 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 12062810 . C A 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 12062814 . T C 27.3 . DP=6;AF1=0.5006;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,25:27 0/1:31,0,25:27
9 12062899 . C T 19.3 . DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,4,0;MQ=37;FQ=20.2;QCHI2=0;PCHI2=0.994;PC2=3,3;PV4=1,3.6e-08,1,1 GT:PL:GQ 0/1:27,0,28:27 0/1:27,0,28:27
9 12064017 . T C 33 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 12065843 . T G 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 12067530 . A T 33 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 12068119 . C A 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 12068135 . C A 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 12069157 . TCC TC 13.9 . INDEL;DP=6;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=15.9;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:28,0,31:29 0/1:28,0,31:29
9 12069187 . A C 19.3 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=21.7;QCHI2=0;PCHI2=0.995;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:27,0,31:29 0/1:27,0,31:29
9 12071525 . T TC 105 . INDEL;DP=10;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=30;FQ=-45;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:74,9,0:57 1/1:74,9,0:57
9 12073798 . A C 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 12074651 . C T 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 12074653 . C A 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 12074967 . A C 9.85 . DP=4;AF1=0.5016;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=6.53;QCHI2=0;PCHI2=0.979;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:22,0,19:20 0/1:22,0,19:20
9 12074980 . T C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 12079188 . A C 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 12079360 . T C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 12081321 . AATA AA 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 12085148 . A C 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 12101810 . T C 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 12111090 . T C 92.7 . DP=64;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=33;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:64,9,0:57 1/1:64,9,0:57
9 12112185 . A C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 12112194 . A T 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 12112342 . G C 15.4 . DP=8;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0.00071,1,0.42 GT:PL:GQ 0/1:25,0,81:28 0/1:25,0,81:28
9 12112989 . T C 5.03 . DP=6;AF1=0.4968;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.0037,1,1 GT:PL:GQ 0/1:19,0,59:22 0/1:19,0,59:22
9 12113446 . CA CAGA 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 12113783 . C T 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 12115597 . C A 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 12116319 . A T 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.00013,1,0.025 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 12117047 . T G 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=23;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 12118578 . TCCC TCC 25.5 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 12118650 . A C 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.0049,1,0.36 GT:PL:GQ 0/1:19,0,59:22 0/1:19,0,59:22
9 12119597 . TG TGG 29.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:35,3,0:42 1/1:35,3,0:42
9 12119636 . C G 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 12120491 . A G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 12120500 . A G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 12121164 . G C 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 12121304 . A C 19.3 . DP=6;AF1=0.4995;CI95=0.5,0.5;DP4=4,0,2,0;MQ=33;FQ=22.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.0011,1,0.23 GT:PL:GQ 0/1:27,0,49:30 0/1:27,0,49:30
9 12122355 . T C 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 12124001 . C A 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 12126915 . T G 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 12127376 . G A 35 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 12128474 . T G 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,6.1e-09,1,1 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 12129525 . G A 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,3.9e-06,1,1 GT:PL:GQ 0/1:22,0,100:25 0/1:22,0,100:25
9 12132361 . T G 37 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:35,3,0:42 1/1:35,3,0:42
9 12133508 . T TA 48 . INDEL;DP=24;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=25;FQ=-41.8;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:45,6,0:51 1/1:45,6,0:51
9 12134419 . T C 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 12138459 . A G 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 12140976 . C A 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 12140977 . C A 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 12143105 . C G 23.3 . DP=138;AF1=0.5005;CI95=0.5,0.5;DP4=2,0,6,0;MQ=37;FQ=17.7;QCHI2=0;PCHI2=0.995;PC2=3,3;PV4=1,3.9e-06,1,1 GT:PL:GQ 0/1:29,0,25:27 0/1:29,0,25:27
9 12143801 . A G 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 12145492 . GT G 31.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 12145495 . T A 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 12147377 . C T 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=23;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 12148259 . A C 17.1 . DP=52;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 12148286 . T C,G 47.5 . DP=80;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=30;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:56,21,15,40,0,37:51 1/1:56,21,15,40,0,37:51
9 12149722 . T G 37 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:35,3,0:42 1/1:35,3,0:42
9 12149939 . C T 122 . DP=88;AF1=1;CI95=0.75,1;DP4=0,0,10,0;MQ=37;FQ=-43.7;QCHI2=0;PCHI2=0.97;PC2=3,3 GT:PL:GQ 1/1:79,15,0:78 1/1:79,15,0:78
9 12151241 . G A 29.5 . DP=6;AF1=0.5127;CI95=0.5,0.75;DP4=2,0,4,0;MQ=37;FQ=-6.45;QCHI2=0;PCHI2=0.963;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:32,0,13:16 0/1:32,0,13:16
9 12151920 . G A 33 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 12153191 . G A 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 12154893 . TCCC TCC 25.7 . INDEL;DP=10;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,4,0;MQ=32;FQ=28.7;QCHI2=0;PCHI2=0.999;PC2=3,3;PV4=1,0,0,0.026 GT:PL:GQ 0/1:34,0,49:37 0/1:34,0,49:37
9 12155544 . TA T 71.7 . INDEL;DP=6;AF1=0.5004;CI95=0.5,0.5;DP4=2,0,4,0;MQ=37;FQ=16.8;QCHI2=0;PCHI2=0.999;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:57,0,28:31 0/1:57,0,28:31
9 12155651 . A G 27.3 . DP=6;AF1=0.5002;CI95=0.5,0.5;DP4=2,0,4,0;MQ=33;FQ=23.3;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0.00024,0.16,0.16 GT:PL:GQ 0/1:31,0,28:29 0/1:31,0,28:29
9 12155667 . A G 87.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:61,6,0:51 1/1:61,6,0:51
9 12156065 . T G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 12157170 . G A 51.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:43,6,0:51 1/1:43,6,0:51
9 12157677 . T G 53.5 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:44,6,0:51 1/1:44,6,0:51
9 12159754 . AG AGG 177 . INDEL;DP=32;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=37;FQ=-48.2;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:110,12,0:63 1/1:110,12,0:63
9 12159755 . G GGT 304 . INDEL;DP=22;AF1=1;CI95=1,1;DP4=0,0,20,0;MQ=37;FQ=-66.3;QCHI2=0;PCHI2=0.999;PC2=3,3 GT:PL:GQ 1/1:174,30,0:99 1/1:174,30,0:99
9 12160349 . T A 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 12160354 . A C 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 12163741 . A T 218 . DP=56;AF1=1;CI95=1,1;DP4=0,0,52,0;MQ=35;FQ=-107;QCHI2=0;PCHI2=1;PC2=3,3 GT:PL:GQ 1/1:127,78,0:99 1/1:127,78,0:99
9 12165742 . G T 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 12165754 . A G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 12165801 . G A 77.7 . DP=10;AF1=0.9999;CI95=0.5,1;DP4=2,0,8,0;MQ=20;FQ=-29.6;QCHI2=1;PCHI2=0.733;PC2=3,3;PV4=1,9.6e-06,1,1 GT:PL:GQ 1/1:55,2,0:38 1/1:55,2,0:38
9 12165809 . A G 3.79 . DP=10;AF1=0.496;CI95=0.25,0.5;DP4=6,0,4,0;MQ=20;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,2.3e-10,0.19,1 GT:PL:GQ 0/1:18,0,40:21 0/1:18,0,40:21
9 12166321 . GAAA GAAAA 121 . INDEL;DP=12;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-45;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:82,9,0:57 1/1:82,9,0:57
9 12166635 . TA T 17.8 . INDEL;DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.7;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:30,0,31:30 0/1:30,0,31:30
9 12167043 . A T 17.4 . DP=6;AF1=0.4994;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=20.3;QCHI2=0;PCHI2=0.994;PC2=3,3;PV4=1,5e-06,1,1 GT:PL:GQ 0/1:26,0,59:29 0/1:26,0,59:29
9 12170174 . C T 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 12170818 . A C 25.3 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=26.1;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:30,0,31:30 0/1:30,0,31:30
9 12170838 . A C 27.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=27.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 12171236 . G A 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 12171243 . T C 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 12171399 . C T 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.0026,1,1 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 12171740 . G A 202 . DP=110;AF1=1;CI95=1,1;DP4=0,0,24,0;MQ=35;FQ=-64.7;QCHI2=0;PCHI2=1;PC2=3,3 GT:PL:GQ 1/1:119,36,0:99 1/1:119,36,0:99
9 12171812 . A G 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 12173159 . G T 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 12175647 . AT ATCT 5.29 . INDEL;DP=4;AF1=0.4989;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.5;QCHI2=0;PCHI2=0.989;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:23,0,31:25 0/1:23,0,31:25
9 12176705 . A C 3.84 . DP=4;AF1=0.501;CI95=0.25,0.5;DP4=2,0,2,0;MQ=31;FQ=3.23;QCHI2=0;PCHI2=0.972;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:18,0,17:18 0/1:18,0,17:18
9 12176989 . G T 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 12177590 . TC T 17.8 . INDEL;DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.7;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:30,0,31:30 0/1:30,0,31:30
9 12178100 . AC A 17.8 . INDEL;DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.7;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:30,0,31:30 0/1:30,0,31:30
9 12178175 . T C 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,9.3e-05,1,1 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 12182292 . T A 33 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 12182594 . T C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 12182597 . A C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 12182605 . A G 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 12183859 . A G 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 12186619 . T A 13.5 . DP=6;AF1=0.499;CI95=0.5,0.5;DP4=4,0,2,0;MQ=33;FQ=16.4;QCHI2=0;PCHI2=0.992;PC2=3,3;PV4=1,2e-05,1,0.26 GT:PL:GQ 0/1:24,0,49:27 0/1:24,0,49:27
9 12188179 . G A 51.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=32;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:43,6,0:51 1/1:43,6,0:51
9 12189965 . T G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 12192805 . A G 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 12193048 . A G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 12193644 . C G 250 . DP=14;AF1=1;CI95=1,1;DP4=0,0,12,0;MQ=37;FQ=-46.7;QCHI2=0;PCHI2=0.984;PC2=3,3 GT:PL:GQ 1/1:143,18,0:75 1/1:143,18,0:75
9 12194219 . A G 163 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=12,0,16,0;MQ=37;FQ=166;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,3.5e-07,1,1 GT:PL:GQ 0/1:99,0,114:99 0/1:99,0,114:99
9 12194340 . A G 3.61 . DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 12194341 . A G 3.61 . DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 12194771 . A G 9.56 . DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=23;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 12194947 . A G 9.8 . DP=12;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,4,0;MQ=24;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,4.8e-05,1,0.079 GT:PL:GQ 0/1:22,0,56:25 0/1:22,0,56:25
9 12196316 . A C 45.5 . DP=64;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=32;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:40,6,0:51 1/1:40,6,0:51
9 12197144 . A G 15.5 . DP=4;AF1=0.5024;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.07;QCHI2=0;PCHI2=0.984;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,19:21 0/1:25,0,19:21
9 12198611 . AGG AG 13.9 . INDEL;DP=6;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=15.9;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:28,0,31:29 0/1:28,0,31:29
9 12200857 . G A 13.2 . DP=10;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 12201278 . T TC 19.8 . INDEL;DP=4;AF1=0.5001;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.7;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:31,0,30:30 0/1:31,0,30:30
9 12201517 . A G 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.067,1,1 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 12201776 . A C 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 12204553 . T G 15.4 . DP=8;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0.00042,1,1 GT:PL:GQ 0/1:25,0,81:28 0/1:25,0,81:28
9 12205291 . G A 23.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:29,6,0:51 1/1:29,6,0:51
9 12205932 . A G 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=10,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.18,1,1 GT:PL:GQ 0/1:19,0,110:22 0/1:19,0,110:22
9 12206193 . G T 178 . DP=20;AF1=1;CI95=1,1;DP4=0,0,16,0;MQ=37;FQ=-52.7;QCHI2=0;PCHI2=0.996;PC2=3,3 GT:PL:GQ 1/1:107,24,0:99 1/1:107,24,0:99
9 12207374 . G A 3.79 . DP=6;AF1=0.496;CI95=0.25,0.5;DP4=4,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0.0062,1,1 GT:PL:GQ 0/1:18,0,59:21 0/1:18,0,59:21
9 12213085 . T C 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.011,1,0.2 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 12213898 . ATTTTT ATTT 8.6 . INDEL;DP=8;AF1=0.5121;CI95=0.5,0.75;DP4=6,0,2,0;MQ=20;FQ=-13.1;QCHI2=0;PCHI2=0.959;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,13:16 0/1:25,0,13:16
9 12214164 . A C 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=10,0,2,0;MQ=35;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.00034,1,1 GT:PL:GQ 0/1:19,0,108:22 0/1:19,0,108:22
9 12216199 . A G 63.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-34.2;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:49,6,0:51 1/1:49,6,0:51
9 12216473 . A G 19.3 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=21.7;QCHI2=0;PCHI2=0.995;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:27,0,31:29 0/1:27,0,31:29
9 12216771 . T G 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 12216930 . TA TAA 92 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-41.8;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:67,6,0:51 1/1:67,6,0:51
9 12217180 . T C 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=20;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 12217211 . C T 27.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=30;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:31,6,0:51 1/1:31,6,0:51
9 12217785 . T G 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 12220146 . A AC 183 . INDEL;DP=8;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=37;FQ=-48.2;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:113,12,0:63 1/1:113,12,0:63
9 12220215 . A C 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 12221133 . T TA 59.7 . INDEL;DP=42;AF1=0.501;CI95=0.5,0.5;DP4=2,0,6,0;MQ=28;FQ=9.28;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,0,8.4e-09 GT:PL:GQ 0/1:51,0,24:27 0/1:51,0,24:27
9 12221664 . GCCCC GCCC 9.94 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 12222556 . C T 27.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=27.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 12222696 . G C 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 12223345 . C T 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 12223348 . G A 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 12224419 . C G 27 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:30,3,0:42 1/1:30,3,0:42
9 12225824 . A C 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 12227067 . C G 88.7 . DP=8;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=33;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:62,9,0:57 1/1:62,9,0:57
9 12227320 . C T 11.9 . DP=4;AF1=0.515;CI95=0.5,0.75;DP4=2,0,2,0;MQ=32;FQ=-7.98;QCHI2=0;PCHI2=0.949;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:23,0,12:15 0/1:23,0,12:15
9 12227580 . G A 60.7 . DP=6;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:48,9,0:57 1/1:48,9,0:57
9 12228329 . ACCC ACC 62 . INDEL;DP=30;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=31;FQ=-41.8;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:52,6,0:51 1/1:52,6,0:51
9 12228951 . A T 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 12234407 . A C 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 12235011 . AT A 31.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 12240231 . T C 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 12243051 . A G 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 12243468 . G T 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 12246047 . A G 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=18;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 12250861 . A G 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 12251239 . A C 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 12251267 . A G 27.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=27.3;QCHI2=0;PCHI2=0.998;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:31,0,31:31 0/1:31,0,31:31
9 12251764 . A G 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 12259358 . A AAG 97.7 . INDEL;DP=42;AF1=0.5;CI95=0.5,0.5;DP4=28,0,10,0;MQ=36;FQ=101;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,0.12,0.0071,1.8e-06 GT:PL:GQ 0/1:70,0,153:73 0/1:70,0,153:73
9 12259467 . GT GTT 158 . INDEL;DP=18;AF1=0.5032;CI95=0.5,0.5;DP4=2,0,8,0;MQ=37;FQ=-3.64;QCHI2=0;PCHI2=0.991;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:100,0,19:22 0/1:100,0,19:22
9 12259844 . TGGG TGG 25.5 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 12260378 . A G 9.22 . DP=4;AF1=0.9969;CI95=0.5,1;DP4=2,0,2,0;MQ=18;FQ=-28.3;QCHI2=1;PCHI2=0.752;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 1/1:20,1,0:23 1/1:20,1,0:23
9 12260855 . T TA 19.8 . INDEL;DP=4;AF1=0.5001;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.7;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:31,0,30:30 0/1:31,0,30:30
9 12264094 . A C 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.32,1,1 GT:PL:GQ 0/1:22,0,95:25 0/1:22,0,95:25
9 12266074 . C G 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 12266140 . A G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 12267034 . A C 45.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=25;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:40,6,0:51 1/1:40,6,0:51
9 12267654 . A G 80.7 . DP=8;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=33;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:58,9,0:57 1/1:58,9,0:57
9 12268385 . C G 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 12268467 . C A 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 12269307 . A C 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 12269636 . A G 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=18;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 12269863 . A C 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 12271202 . A G 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=35;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,3.9e-06,1,1 GT:PL:GQ 0/1:22,0,93:25 0/1:22,0,93:25
9 12271829 . TATC T 13.9 . INDEL;DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.8;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1,1,0.26 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 12272733 . G T 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 12277124 . TG T 112 . INDEL;DP=18;AF1=0.5263;CI95=0.5,0.75;DP4=2,0,12,0;MQ=27;FQ=-18.6;QCHI2=0;PCHI2=0.932;PC2=3,3;PV4=1,1,0,1.4e-05 GT:PL:GQ 0/1:77,0,10:13 0/1:77,0,10:13
9 12280646 . A C 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 12281632 . A G 9.56 . DP=24;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 12282031 . A T 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 12282461 . A G 118 . DP=10;AF1=1;CI95=0.75,1;DP4=0,0,10,0;MQ=35;FQ=-43.7;QCHI2=0;PCHI2=0.97;PC2=3,3 GT:PL:GQ 1/1:77,15,0:78 1/1:77,15,0:78
9 12282828 . A G 156 . DP=12;AF1=1;CI95=1,1;DP4=0,0,12,0;MQ=37;FQ=-46.7;QCHI2=0;PCHI2=0.984;PC2=3,3 GT:PL:GQ 1/1:96,18,0:75 1/1:96,18,0:75
9 12283117 . G A 8.08 . DP=8;AF1=0.498;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0.063,1,1 GT:PL:GQ 0/1:21,0,81:24 0/1:21,0,81:24
9 12283422 . G A 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 12283899 . C A 15.4 . DP=8;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=18.3;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0.08,1,1 GT:PL:GQ 0/1:25,0,81:28 0/1:25,0,81:28
9 12283965 . GTTCTT GTTCTTCTT 151 . INDEL;DP=8;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=32;FQ=-48.2;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:97,12,0:63 1/1:97,12,0:63
9 12284082 . AC ACC 183 . INDEL;DP=8;AF1=1;CI95=0.75,1;DP4=0,0,8,0;MQ=37;FQ=-48.2;QCHI2=0;PCHI2=0.942;PC2=3,3 GT:PL:GQ 1/1:113,12,0:63 1/1:113,12,0:63
9 12284381 . A G 9.8 . DP=8;AF1=0.4984;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.098,1,0.001 GT:PL:GQ 0/1:22,0,77:25 0/1:22,0,77:25
9 12284392 . G A 59.2 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=4,0,6,0;MQ=37;FQ=60.1;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,0.0069,1,1 GT:PL:GQ 0/1:47,0,48:47 0/1:47,0,48:47
9 12285128 . TGG TG 27.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 12285190 . GAA GA 3.99 . INDEL;DP=8;AF1=0.4984;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=6.01;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.18,1,1 GT:PL:GQ 0/1:22,0,78:25 0/1:22,0,78:25
9 12287530 . A G 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 12287620 . A C 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=10,0,2,0;MQ=35;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.31,1,1 GT:PL:GQ 0/1:19,0,105:22 0/1:19,0,105:22
9 12288277 . G GA 49.7 . INDEL;DP=34;AF1=0.5002;CI95=0.5,0.5;DP4=4,0,4,0;MQ=34;FQ=20.7;QCHI2=0;PCHI2=0.999;PC2=3,3;PV4=1,1,0.067,0.12 GT:PL:GQ 0/1:46,0,30:33 0/1:46,0,30:33
9 12288780 . A G 15.2 . DP=14;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 12289025 . GTCCTCCTC GTCCTC 141 . INDEL;DP=6;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-45;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:92,9,0:57 1/1:92,9,0:57
9 12291315 . T TC 13.9 . INDEL;DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.8;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:28,0,57:31 0/1:28,0,57:31
9 12292009 . G C 9.8 . DP=10;AF1=0.4984;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.067,1,1 GT:PL:GQ 0/1:22,0,97:25 0/1:22,0,97:25
9 12292286 . C G 70.7 . DP=6;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-37.5;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:53,9,0:57 1/1:53,9,0:57
9 12292344 . A G 308 . DP=106;AF1=1;CI95=1,1;DP4=0,0,100,0;MQ=36;FQ=-180;QCHI2=0;PCHI2=1;PC2=3,3 GT:PL:GQ 1/1:172,151,0:99 1/1:172,151,0:99
9 12292454 . A G 346 . DP=214;AF1=1;CI95=1,1;DP4=0,0,204,0;MQ=37;FQ=-226;QCHI2=0;PCHI2=1;PC2=3,3 GT:PL:GQ 1/1:191,255,0:99 1/1:191,255,0:99
9 12296689 . C A 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 12297923 . A C 7.69 . DP=4;AF1=0.8261;CI95=0.5,1;DP4=2,0,2,0;MQ=18;FQ=-25.6;QCHI2=1;PCHI2=0.774;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 1/1:19,0,1:5 1/1:19,0,1:5
9 12297939 . A C 17.1 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 12298889 . A G 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 12299687 . A C 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 12299757 . C T 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=23;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 12307281 . T G 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 12308101 . C G 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 12310284 . G A 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 12315493 . T G 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=18;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 12352028 . C T 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 12356439 . A C 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 12368645 . C T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 12378617 . A C 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 12379385 . A C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 12379649 . TCC TC 27.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 12391132 . C G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 12391142 . T C 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 12391246 . A C 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 12391340 . C G 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 12391410 . G C 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,2.2e-05,1,0.12 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 12391430 . GC G 17.8 . INDEL;DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.7;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:30,0,31:30 0/1:30,0,31:30
9 12392143 . A T 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 12392153 . G C 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 12392489 . T G 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 12392731 . C T 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 12393205 . A T 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 12393208 . A G 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=32;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,0,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 12393842 . A C 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 12393944 . A C 33 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 12394164 . G T 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,1.2e-07,1,1 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 12395066 . A C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 12395181 . T G 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 12395983 . C A 37 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:35,3,0:42 1/1:35,3,0:42
9 12396165 . C A 17.4 . DP=4;AF1=0.4996;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=19.9;QCHI2=0;PCHI2=0.994;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:26,0,31:28 0/1:26,0,31:28
9 12396552 . G T 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 12396555 . G C 25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:29,3,0:42 1/1:29,3,0:42
9 12400184 . A G 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 12414251 . G T 8.08 . DP=4;AF1=0.4982;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:21,0,31:24 0/1:21,0,31:24
9 12414497 . G T 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 12416353 . A G 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 12416361 . T G 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 12417071 . T G 39 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 12433970 . C A 35 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 12438982 . C T 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 12438984 . C A 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 12438986 . A G 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 12448119 . G T 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 12448601 . A G 3.61 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 12454297 . T G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 12454301 . T G 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 12455153 . T C 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 12455253 . A C 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 12457081 . G A 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 12457895 . C A 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 12466871 . T G 39 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 12468408 . G T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 12468788 . A G 37 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:35,3,0:42 1/1:35,3,0:42
9 12504588 . A C 33 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 12504606 . G T 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 12509095 . T TC 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 12514307 . T A 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 12533310 . A C 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 12598255 . A G 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 12600508 . G A 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=20;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 12609021 . T G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 12615288 . G A 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 12621612 . TCC TC 27.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 12622321 . C T 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 12629205 . T G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 12631404 . T G 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 12634813 . CT CTT 19.8 . INDEL;DP=4;AF1=0.5002;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=15.9;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:31,0,28:29 0/1:31,0,28:29
9 12645030 . CA CAGA 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 12646640 . C T 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 12647691 . C T 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 12647700 . T G 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 12655804 . A G 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 12678395 . T C 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=23;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 12699944 . G T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 12701726 . T G 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 12729857 . C A 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 12737684 . A G 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 12746284 . T G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 12750014 . T A 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 12750046 . G A 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 12751296 . A G 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 12751300 . G T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 12751319 . A G 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 12763705 . A C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 12783636 . CTT CT 27.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 12783659 . G A 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 12795038 . A T 3.61 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 12795695 . A C 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 12800818 . G T 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 12812690 . G A 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 12828643 . C CG 92 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-41.8;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:67,6,0:51 1/1:67,6,0:51
9 12858263 . C G 5.03 . DP=6;AF1=0.4968;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.00014,1,0.013 GT:PL:GQ 0/1:19,0,59:22 0/1:19,0,59:22
9 12861817 . T C 35 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 12867598 . C G 234 . DP=32;AF1=1;CI95=1,1;DP4=0,0,28,0;MQ=36;FQ=-70.7;QCHI2=0;PCHI2=1;PC2=3,3 GT:PL:GQ 1/1:135,42,0:99 1/1:135,42,0:99
9 12867691 . T A 9.8 . DP=12;AF1=0.4984;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0.025,1,1 GT:PL:GQ 0/1:22,0,81:25 0/1:22,0,81:25
9 12869047 . G C 29 . DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 12869333 . T TA 6.57 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=23;FQ=-38.3;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 12869994 . G A 39 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 12872880 . A G 61.2 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=8,0,10,0;MQ=37;FQ=64.2;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,4.7e-12,1,1 GT:PL:GQ 0/1:48,0,91:51 0/1:48,0,91:51
9 12873352 . G A 105 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=8,0,16,0;MQ=37;FQ=108;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,3.6e-07,1,1 GT:PL:GQ 0/1:70,0,80:73 0/1:70,0,80:73
9 12874119 . G A 6.25 . DP=14;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 12874148 . TGG TG 8.41 . INDEL;DP=24;AF1=0.4992;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=11.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,59:28 0/1:25,0,59:28
9 12874175 . GCC GC 248 . INDEL;DP=20;AF1=1;CI95=1,1;DP4=0,0,16,0;MQ=36;FQ=-60.3;QCHI2=0;PCHI2=0.996;PC2=3,3 GT:PL:GQ 1/1:146,24,0:99 1/1:146,24,0:99
9 12875263 . G A 205 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=18,0,24,0;MQ=37;FQ=208;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,4.9e-22,1,1 GT:PL:GQ 0/1:120,0,136:99 0/1:120,0,136:99
9 12875491 . A G 155 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=10,0,20,0;MQ=36;FQ=155;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,1.8e-14,0.16,1 GT:PL:GQ 0/1:95,0,95:95 0/1:95,0,95:95
9 12875798 . G A 5.03 . DP=10;AF1=0.4968;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,2.2e-09,1,1 GT:PL:GQ 0/1:19,0,100:22 0/1:19,0,100:22
9 12876247 . T C 235 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=14,0,24,0;MQ=36;FQ=194;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,6.5e-10,1,0.31 GT:PL:GQ 0/1:135,0,113:99 0/1:135,0,113:99
9 12876798 . C A 31.2 . DP=20;AF1=0.4999;CI95=0.5,0.5;DP4=16,0,4,0;MQ=36;FQ=34.3;QCHI2=0;PCHI2=0.999;PC2=3,3;PV4=1,0.00014,1,1 GT:PL:GQ 0/1:33,0,137:36 0/1:33,0,137:36
9 12938867 . T G 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 12938869 . T G 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 12938871 . A G 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 13056366 . C G 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 13056379 . G GA 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 13081148 . G T 35.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=29;FQ=-34.2;QCHI2=1;PCHI2=0.822;PC2=3,3 GT:PL:GQ 1/1:35,6,0:51 1/1:35,6,0:51
9 13081176 . GA G 31.5 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 13081182 . G T 27.6 . DP=4;AF1=0.5205;CI95=0.5,0.75;DP4=2,0,2,0;MQ=29;FQ=-9.61;QCHI2=0;PCHI2=0.943;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:31,0,11:14 0/1:31,0,11:14
9 13113684 . A G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 13113731 . T C 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 13115443 . A G 4.83 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 13141576 . C A 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 13150875 . C G 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.33,1,1 GT:PL:GQ 0/1:28,0,56:31 0/1:28,0,56:31
9 13150896 . G C 3.79 . DP=4;AF1=0.4962;CI95=0.25,0.5;DP4=2,0,2,0;MQ=37;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:18,0,31:21 0/1:18,0,31:21
9 13151224 . G A 105 . DP=126;AF1=0.5;CI95=0.5,0.5;DP4=84,0,36,0;MQ=36;FQ=108;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,8.4e-34,1,1 GT:PL:GQ 0/1:70,0,156:73 0/1:70,0,156:73
9 13152270 . G GA 19.8 . INDEL;DP=10;AF1=0.5001;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.7;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,1,1,0 GT:PL:GQ 0/1:31,0,30:30 0/1:31,0,30:30
9 13154448 . TCC TC 137 . INDEL;DP=8;AF1=1;CI95=0.75,1;DP4=0,0,6,0;MQ=37;FQ=-45;QCHI2=0;PCHI2=0.894;PC2=3,3 GT:PL:GQ 1/1:90,9,0:57 1/1:90,9,0:57
9 13158263 . AC A 31.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 13158340 . CG CGG 55.7 . INDEL;DP=50;AF1=0.5;CI95=0.5,0.5;DP4=8,0,4,0;MQ=37;FQ=58.7;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,1,1,1 GT:PL:GQ 0/1:49,0,76:52 0/1:49,0,76:52
9 13158758 . G T 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.0003,1,1 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 13158802 . T C 5.03 . DP=8;AF1=0.4968;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,6.6e-08,1,1 GT:PL:GQ 0/1:19,0,81:22 0/1:19,0,81:22
9 13159399 . A G 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 13160072 . G A 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 13161040 . G GA 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 13163689 . T G 21.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:27,3,0:42 1/1:27,3,0:42
9 13164488 . GT GTT 39.7 . INDEL;DP=44;AF1=0.5;CI95=0.5,0.5;DP4=12,0,4,0;MQ=37;FQ=42.7;QCHI2=0;PCHI2=1;PC2=3,3;PV4=1,1,1,0.0048 GT:PL:GQ 0/1:41,0,111:44 0/1:41,0,111:44
9 13164596 . A G 3.61 . DP=8;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 13164609 . A C 5.04 . DP=4;AF1=0.497;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=7.25;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:19,0,31:22 0/1:19,0,31:22
9 13164954 . T G 11.6 . DP=8;AF1=0.4987;CI95=0.5,0.5;DP4=6,0,2,0;MQ=30;FQ=14.4;QCHI2=0;PCHI2=0.99;PC2=3,3;PV4=1,0.0013,1,1 GT:PL:GQ 0/1:23,0,58:26 0/1:23,0,58:26
9 13165009 . ATTT AT 13.9 . INDEL;DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=16.8;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0,1,0.0049 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 13165319 . A G 21.3 . DP=6;AF1=0.4996;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=24.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0.013,1,1 GT:PL:GQ 0/1:28,0,59:31 0/1:28,0,59:31
9 13165330 . A G 8.08 . DP=10;AF1=0.498;CI95=0.5,0.5;DP4=8,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,2.1e-05,1,1 GT:PL:GQ 0/1:21,0,100:24 0/1:21,0,100:24
9 13165698 . CT CTT 8.41 . INDEL;DP=10;AF1=0.4992;CI95=0.5,0.5;DP4=6,0,2,0;MQ=37;FQ=11.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,1,1,0.0003 GT:PL:GQ 0/1:25,0,74:28 0/1:25,0,74:28
9 13166076 . A G 23 . DP=68;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 13168770 . G C 19.3 . DP=6;AF1=0.4995;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=22.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,2.1e-07,1,1 GT:PL:GQ 0/1:27,0,59:30 0/1:27,0,59:30
9 13176871 . A G 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 13177915 . T G 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 13177923 . T G 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 13178498 . TCC TCCC 31.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 13178697 . C A 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 13180385 . T G 5.03 . DP=12;AF1=0.4968;CI95=0.5,0.5;DP4=10,0,2,0;MQ=37;FQ=7.26;QCHI2=0;PCHI2=0.981;PC2=3,3;PV4=1,0.08,1,1 GT:PL:GQ 0/1:19,0,112:22 0/1:19,0,112:22
9 13180667 . C G 41 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 13181035 . G A 27.3 . DP=6;AF1=0.5002;CI95=0.5,0.5;DP4=2,0,4,0;MQ=37;FQ=23.3;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0.00022,1,1 GT:PL:GQ 0/1:31,0,28:29 0/1:31,0,28:29
9 13181277 . A C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.758;PC2=3,3 GT:PL:GQ 1/1:23,3,0:42 1/1:23,3,0:42
9 13182484 . G A 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 13183207 . G T 6.48 . DP=4;AF1=0.4977;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=8.91;QCHI2=0;PCHI2=0.983;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:20,0,31:23 0/1:20,0,31:23
9 13186086 . C A 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,4.9e-05,1,1 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 13188942 . A G 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 13189124 . A G 15.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.754;PC2=3,3 GT:PL:GQ 1/1:24,3,0:42 1/1:24,3,0:42
9 13190133 . T G 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 13190957 . ATT AT 27.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:34,3,0:42 1/1:34,3,0:42
9 13193143 . T C 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 13193189 . A G 7.84 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 13194940 . T C 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 13195518 . TGC T 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 13195548 . T G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 13201639 . G T 17.1 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 13201645 . G A 6.52 . DP=6;AF1=0.5007;CI95=0.5,0.5;DP4=4,0,2,0;MQ=26;FQ=5.68;QCHI2=0;PCHI2=0.976;PC2=3,3;PV4=1,0.12,1,1 GT:PL:GQ 0/1:20,0,19:20 0/1:20,0,19:20
9 13203678 . G T 9.8 . DP=4;AF1=0.4986;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=12.5;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:22,0,31:24 0/1:22,0,31:24
9 13204302 . T A 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 13205687 . TTGTGTGTGTGTGTGTGT TTGTGTGTGTGTGTGTGTGT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 13208074 . A C 33 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:33,3,0:42 1/1:33,3,0:42
9 13209104 . A C 23 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:28,3,0:42 1/1:28,3,0:42
9 13219904 . A AG 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 13222196 . A T 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 13222449 . C A 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 13225096 . AGG AG 35.7 . INDEL;DP=8;AF1=0.5016;CI95=0.5,0.5;DP4=2,0,4,0;MQ=33;FQ=6.01;QCHI2=0;PCHI2=0.995;PC2=3,3;PV4=1,0.25,0.16,1 GT:PL:GQ 0/1:39,0,22:25 0/1:39,0,22:25
9 13229141 . C A 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 13229216 . A T 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 13235242 . T G 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 13235638 . G T 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 13237915 . A T 6.25 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.802;PC2=3,3 GT:PL:GQ 1/1:19,3,0:42 1/1:19,3,0:42
9 13237922 . G T 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 13238319 . T G 3.79 . DP=6;AF1=0.496;CI95=0.25,0.5;DP4=4,0,2,0;MQ=33;FQ=5.73;QCHI2=0;PCHI2=0.98;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:18,0,49:21 0/1:18,0,49:21
9 13239083 . G A 9.8 . DP=6;AF1=0.4984;CI95=0.5,0.5;DP4=4,0,2,0;MQ=37;FQ=12.6;QCHI2=0;PCHI2=0.987;PC2=3,3;PV4=1,1.3e-05,1,1 GT:PL:GQ 0/1:22,0,59:25 0/1:22,0,59:25
9 13239651 . A G 3.61 . DP=24;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 13243428 . C A 29 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:31,3,0:42 1/1:31,3,0:42
9 13243619 . CT CTT 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 13243753 . T G 23.3 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=24.8;QCHI2=0;PCHI2=0.997;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:29,0,31:30 0/1:29,0,31:30
9 13244086 . T C 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 13244738 . T G 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 13244750 . C G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 13245033 . TGGGG TGGG 9.94 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 13245045 . A G 9.56 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.772;PC2=3,3 GT:PL:GQ 1/1:21,3,0:42 1/1:21,3,0:42
9 13245804 . AAGAG AAG 70 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=31;FQ=-41.8;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:56,6,0:51 1/1:56,6,0:51
9 13245885 . T G 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 13246497 . A C 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 13248282 . A C 19.3 . DP=10;AF1=0.4995;CI95=0.5,0.5;DP4=6,0,4,0;MQ=37;FQ=22.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,4.1e-05,1,0.0054 GT:PL:GQ 0/1:27,0,79:30 0/1:27,0,79:30
9 13249883 . T C 21.3 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=23.3;QCHI2=0;PCHI2=0.996;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:28,0,31:29 0/1:28,0,31:29
9 13249904 . A C 15.4 . DP=4;AF1=0.4994;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=18.1;QCHI2=0;PCHI2=0.993;PC2=3,3;PV4=1,0,1,1 GT:PL:GQ 0/1:25,0,31:27 0/1:25,0,31:27
9 13251973 . T G 3.61 . DP=12;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.85;PC2=3,3 GT:PL:GQ 1/1:17,3,0:42 1/1:17,3,0:42
9 13251987 . G GC 92 . INDEL;DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-41.8;QCHI2=1;PCHI2=0.823;PC2=3,3 GT:PL:GQ 1/1:67,6,0:51 1/1:67,6,0:51
9 13314840 . C A 19.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.8;QCHI2=1;PCHI2=0.75;PC2=3,3 GT:PL:GQ 1/1:26,3,0:42 1/1:26,3,0:42
9 13315350 . G A 4.83 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=18;FQ=-30.7;QCHI2=1;PCHI2=0.824;PC2=3,3 GT:PL:GQ 1/1:18,3,0:42 1/1:18,3,0:42
9 13316197 . T A 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 13316206 . A C 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 13316214 . T A 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 13319296 . T G 17.1 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.8;QCHI2=1;PCHI2=0.752;PC2=3,3 GT:PL:GQ 1/1:25,3,0:42 1/1:25,3,0:42
9 13319300 . T G 11.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.763;PC2=3,3 GT:PL:GQ 1/1:22,3,0:42 1/1:22,3,0:42
9 13319302 . T G 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 13321858 . T C 7.84 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-30.7;QCHI2=1;PCHI2=0.784;PC2=3,3 GT:PL:GQ 1/1:20,3,0:42 1/1:20,3,0:42
9 13322973 . TA T 31.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:36,3,0:42 1/1:36,3,0:42
9 13328176 . G GATC 33.5 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-38.3;QCHI2=1;PCHI2=0.749;PC2=3,3 GT:PL:GQ 1/1:37,3,0:42 1/1:37,3,0:42
9 13330123 . T G 8.08 . DP=4;AF1=0.4982;CI95=0.5,0.5;DP4=2,0,2,0;MQ=37;FQ=10.7;QCHI2=0;PCHI2=0.985;PC2=3,3;PV4=1,0,1,0 GT:PL:GQ 0/1:21,0,31:24 0/1:21,0,31:24
9 13330402 . T C 116 . DP=22;AF1=1;CI95=1,1;DP4=0,0,14,0;MQ=34;FQ=-49.7;QCHI2=0;PCHI2=0.992;PC2=3,3 GT:PL:GQ 1/1:76,21,0:87 1/1:76,21,0:87
9 13330543 . T A 49.3 . DP=10;AF1=0.5008;CI95=0.5,0.5;DP4=2,0,6,0;MQ=37;FQ=
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