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Source: libgoby-java
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Pierre Gruet <pgt@debian.org>,
Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
maven-debian-helper,
javahelper,
default-jdk
Build-Depends-Indep: ant,
ant-contrib,
libjbzip2-java,
libcommons-collections3-java,
libcommons-configuration-java,
libcommons-exec-java,
libcommons-io-java,
libcommons-lang-java,
libcommons-logging-java,
libcommons-math-java,
libcommons-cli-java,
libdistlib-java,
liblog4j1.2-java,
libexec-maven-plugin-java,
libjaxb-api-java,
libmaven-assembly-plugin-java,
libmaven-antrun-plugin-java,
libbuild-helper-maven-plugin-java,
libmaven-dependency-plugin-java,
libmaven-source-plugin-java,
libmaven-javadoc-plugin-java,
libprotobuf-java,
libhtsjdk-java,
libfastutil-java,
protobuf-compiler,
libjsap-java,
libdsiutils-java,
libicb-utils-java,
libreflections-java,
libpj-java,
libprotobuf-dev,
pkgconf,
r-cran-rjava,
libeasymock-java <!nocheck>,
junit4 <!nocheck>,
testng <!nocheck>,
libpicard-java <!nocheck>
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/libgoby-java/
Vcs-Git: https://salsa.debian.org/med-team/libgoby-java.git
Homepage: https://campagnelab.org/software/goby/
Rules-Requires-Root: no
Package: libgoby-io-java
Architecture: all
Depends: ${shlibs:Depends},
${misc:Depends},
${maven:Depends},
libcommons-collections3-java,
libjbzip2-java,
libpj-java
Recommends: ${java:Recommends},
${maven:OptionalDepends}
Description: IO API for goby
Goby is a next-gen data management framework designed to facilitate the
implementation of efficient data analysis pipelines.
.
Goby provides very efficient file formats to store next-generation sequencing
data and intermediary analysis results.
.
This package contains the Goby IO API, including code necessary to read and
write Goby file formats. It is released under the LGPL3 license.
Package: goby-java
Architecture: all
Depends: ${shlibs:Depends},
${misc:Depends},
${maven:Depends},
default-jre,
libgoby-io-java (= ${binary:Version}),
libdistlib-java,
libjaxb-api-java,
r-cran-rjava
Recommends: ${java:Recommends},
${maven:OptionalDepends}
Description: next-generation sequencing data and results analysis tool
Goby is a next-gen data management framework designed to facilitate the
implementation of efficient data analysis pipelines.
.
Goby provides very efficient file formats to store next-generation sequencing
data and intermediary analysis results.
.
Goby also provides utilities that implement common next-gen data computations.
These utilities are designed to be relatively easy to use, yet very efficient.
.
This package provides the entire Goby framework, including application
programs (i.e., Goby modes). It is released under the GPL3 license.
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