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|
/* -*- Mode: C; indent-tabs-mode: nil; c-basic-offset: 4 c-style: "K&R" -*- */
/*
libgpiv - library for Particle Image Velocimetry
Copyright (C) 2002, 2003, 2004, 2005, 2006, 2007, 2008
Gerber van der Graaf
This file is part of libgpiv.
Libgpiv is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2, or (at your option)
any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software Foundation,
Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
-----------------------------------------------------------------------
FILENAME: valid_par.c
LIBRARY: libgpiv
EXTERNAL FUNCTIONS:
gpiv_valid_default_parameters
gpiv_valid_get_parameters_from_resources
gpiv_valid_parameters_set
gpiv_valid_read_parameters
gpiv_valid_testonly_parameters
gpiv_valid_testadjust_parameters
gpiv_valid_fprint_parameters
gpiv_valid_cp_parameters
valid_ovwrt_parameters
gpiv_valid_fread_hdf5_parameters
gpiv_valid_fwrite_hdf5_parameters
LAST MODIFICATION DATE: $Id: valid_par.c,v 1.9 2008-09-25 13:19:54 gerber Exp $
--------------------------------------------------------------------- */
#include <gpiv.h>
/*
* Default values and keys of GpivValidPar
*/
const gfloat VALIDPAR_DEFAULT__DATA_YIELD = 0.95; /**< Default parameter for data_yield of __GpivValidPar */
const gfloat VALIDPAR_DEFAULT__RESIDU_MAX = GPIV_RESIDU_MAX_NORMMEDIAN; /**< Default parameter for residu_max of __GpivValidPar */
enum {
VALIDPAR_DEFAULT__RESIDU_TYPE = 2, /**< Default parameter for residu_type of __GpivValidPar */
VALIDPAR_DEFAULT__SUBST_TYPE = 2, /**< Default parameter for subst_type of __GpivValidPar */
VALIDPAR_DEFAULT__HISTO_TYPE = 0, /**< default parameter for histo_type of __GpivValidPar */
VALIDPAR_DEFAULT__ARRAY_LENGTH = 3, /**< Default parameter for array_length of __GpivValidPar */
VALIDPAR_DEFAULT__NEIGHBORS = 3 /**< Default parameter for neighbors of __GpivValidPar */
};
const gchar *VALIDPAR_KEY__DATA_YIELD = "Data_yield"; /**< Key for data_yield of __GpivValidPar */
const gchar *VALIDPAR_KEY__RESIDU_MAX = "Residu_max"; /**< Key for residu_max of __GpivValidPar */
const gchar *VALIDPAR_KEY__RESIDU_TYPE = "Residu_type"; /**< Key for residu_type of __GpivValidPar */
const gchar *VALIDPAR_KEY__SUBST_TYPE = "Subst_type"; /**< Key for subst_type of __GpivValidPar */
const gchar *VALIDPAR_KEY__HISTO_TYPE = "Histo_type"; /**< default parameter for histo_type of __GpivValidPar */
const gchar *VALIDPAR_KEY__ARRAY_LENGTH = ""; /**< Key for array_length of __GpivValidPar */
const gchar *VALIDPAR_KEY__NEIGHBORS = "Neighbors"; /**< Key for neighbors of __GpivValidPar */
static void
valid_ovwrt_parameters (const GpivValidPar *valid_par_src,
GpivValidPar *valid_par_dest,
const gboolean force
);
static herr_t
attr_info(hid_t loc_id,
const char *name,
GpivValidPar *valid_par
);
static void
obtain_valdipar_fromline (char line[],
GpivValidPar *image_par,
gboolean verbose
);
/*
* Public functions
*/
void
gpiv_valid_parameters_set (GpivValidPar *valid_par,
const gboolean flag
)
/*-----------------------------------------------------------------------------
* Set flag for valid_par __set */
{
valid_par->data_yield__set = flag;
valid_par->residu_max__set = flag;
valid_par->neighbors__set = flag;
valid_par->residu_type__set = flag;
valid_par->subst_type__set = flag;
valid_par->histo_type__set = flag;
}
void
gpiv_valid_default_parameters(GpivValidPar *valid_par_default,
const gboolean force
)
/*-----------------------------------------------------------------------------
* Default parameter values
*/
{
if (!valid_par_default->data_yield__set || force)
valid_par_default->data_yield = VALIDPAR_DEFAULT__DATA_YIELD;
if (!valid_par_default->residu_max__set || force)
valid_par_default->residu_max = VALIDPAR_DEFAULT__RESIDU_MAX;
if (!valid_par_default->neighbors__set || force)
valid_par_default->neighbors = VALIDPAR_DEFAULT__NEIGHBORS;
if (!valid_par_default->residu_type__set || force)
valid_par_default->residu_type = VALIDPAR_DEFAULT__RESIDU_TYPE;
if (!valid_par_default->subst_type__set || force)
valid_par_default->subst_type = VALIDPAR_DEFAULT__SUBST_TYPE;
if (!valid_par_default->histo_type__set || force)
valid_par_default->histo_type = VALIDPAR_DEFAULT__HISTO_TYPE;
gpiv_valid_parameters_set(valid_par_default, TRUE);
}
GpivValidPar *
gpiv_valid_get_parameters_from_resources (const gchar *localrc,
const gboolean verbose
)
/*-----------------------------------------------------------------------------
* DESCRIPTION:
* Reads validation parameters from system-wide gpiv.conf and $HOME/.gpivrc
*---------------------------------------------------------------------------*/
{
GpivValidPar *valid_par = g_new0 (GpivValidPar, 1);
gpiv_valid_parameters_set (valid_par, FALSE);
gpiv_scan_parameter (GPIV_VALIDPAR_KEY, localrc, valid_par, verbose);
gpiv_scan_resourcefiles (GPIV_VALIDPAR_KEY, valid_par, verbose);
return valid_par;
}
void
gpiv_valid_read_parameters(FILE *fp,
GpivValidPar *valid_par,
const gboolean verbose
)
/*-----------------------------------------------------------------------------
* DESCRIPTION:
* Read all parameters for PIV data validation
* if not defined by command line keys
*
* PROTOTYPE LOCATATION:
* valid.h
*
* INPUTS:
*
* OUTPUTS:
*
* RETURNS:
*---------------------------------------------------------------------------*/
{
char line[GPIV_MAX_CHARS], par_name[GPIV_MAX_CHARS];
if (fp == stdin || fp == NULL) {
while (gets (line) != NULL) {
obtain_valdipar_fromline (line, valid_par, verbose);
}
} else {
while (fgets (line, GPIV_MAX_CHARS, fp) != NULL) {
obtain_valdipar_fromline (line, valid_par, verbose);
}
}
return;
}
gchar *
gpiv_valid_check_parameters_read (GpivValidPar *valid_par,
const GpivValidPar *valid_par_default
)
/*-----------------------------------------------------------------------------
* DESCRIPTION:
* Check out if all parameters have been read
* Returns: NULL on success or *err_msg on failure
*
* PROTOTYPE LOCATATION:
* valid.h
*
* INPUTS:
*
* OUTPUTS:
*
* RETURNS:
*---------------------------------------------------------------------------*/
{
gchar *err_msg = NULL;
if (valid_par->data_yield__set == FALSE) {
valid_par->data_yield__set = TRUE;
if (valid_par_default == NULL) {
err_msg = "Using default from libgpiv: ";
valid_par->data_yield = VALIDPAR_DEFAULT__DATA_YIELD;
} else {
err_msg = "Using default: ";
valid_par->data_yield = valid_par_default->data_yield;
}
gpiv_warning("%s\n%s.%s %f",
err_msg,
GPIV_VALIDPAR_KEY,
VALIDPAR_KEY__DATA_YIELD,
valid_par->data_yield);
}
/*
* Optional
*/
if (valid_par->residu_max__set == FALSE) {
valid_par->residu_max__set = TRUE;
if (valid_par_default == NULL) {
valid_par->residu_max = VALIDPAR_DEFAULT__RESIDU_MAX;
err_msg = "Using default from libgpiv: ";
} else {
err_msg = "Using default: ";
valid_par->residu_max = valid_par_default->residu_max;
}
gpiv_warning("%s\n%s.%s %f",
err_msg,
GPIV_VALIDPAR_KEY,
VALIDPAR_KEY__RESIDU_MAX,
valid_par->residu_max);
}
if (valid_par->neighbors__set == FALSE) {
valid_par->neighbors__set = TRUE;
if (valid_par_default == NULL) {
err_msg = "Using default from libgpiv: ";
valid_par->neighbors = VALIDPAR_DEFAULT__NEIGHBORS;
} else {
err_msg = "Using default: ";
valid_par->neighbors = valid_par_default->neighbors;
}
gpiv_warning("%s\n%s.%s %d",
err_msg,
GPIV_VALIDPAR_KEY,
VALIDPAR_KEY__NEIGHBORS,
valid_par->neighbors);
}
/*
* Optional:
*/
if (valid_par->residu_type__set == FALSE) {
valid_par->residu_type__set = TRUE;
if (valid_par_default == NULL) {
err_msg = "Using default from libgpiv: ";
valid_par->residu_type = VALIDPAR_DEFAULT__RESIDU_TYPE;
} else {
err_msg = "Using default: ";
valid_par->residu_type = valid_par_default->residu_type;
}
gpiv_warning("%s\n%s.%s %d",
err_msg,
GPIV_VALIDPAR_KEY,
VALIDPAR_KEY__RESIDU_TYPE,
valid_par->residu_type);
}
if (valid_par->subst_type__set == FALSE) {
valid_par->subst_type__set = TRUE;
if (valid_par_default == NULL) {
err_msg = "Using default from libgpiv: ";
valid_par->subst_type = VALIDPAR_DEFAULT__SUBST_TYPE;
} else {
err_msg = "Using default: ";
valid_par->subst_type = valid_par_default->subst_type;
}
gpiv_warning("%s\n%s.%s %d",
err_msg,
GPIV_VALIDPAR_KEY,
VALIDPAR_KEY__SUBST_TYPE,
valid_par->subst_type);
}
if (valid_par->histo_type__set == FALSE) {
valid_par->histo_type__set = TRUE;
if (valid_par_default == NULL) {
err_msg = "Using default from libgpiv: ";
valid_par->histo_type = VALIDPAR_DEFAULT__HISTO_TYPE;
} else {
err_msg = "Using default: ";
valid_par->histo_type = valid_par_default->histo_type;
}
gpiv_warning("%s\n%s.%s %d",
err_msg,
GPIV_VALIDPAR_KEY,
VALIDPAR_KEY__HISTO_TYPE,
valid_par->histo_type);
}
return err_msg;
}
gchar *
gpiv_valid_testonly_parameters (const GpivValidPar *valid_par
)
/*-----------------------------------------------------------------------------
* Testing parameters if have been set to correct values and
* initializing derived variables
*/
{
gchar *err_msg = NULL;
if (valid_par->residu_type == GPIV_VALID_RESIDUTYPE__NORMMEDIAN
&& valid_par->residu_max != GPIV_RESIDU_MAX_NORMMEDIAN) {
err_msg = "gpiv_valid_testonly_parameters: residu_type == GPIV_VALID_RESIDUTYPE__NORMMEDIAN, but valid_par->residu_max != GPIV_RESIDU_MAX_NORMMEDIAN";
g_message ("gpiv_valid_testonly_parameters:: adapting residu_max = %f", valid_par->residu_max);
return err_msg;
}
return err_msg;
}
gchar *
gpiv_valid_testadjust_parameters (GpivValidPar *valid_par
)
/*-----------------------------------------------------------------------------
* Tests if all validation parameters have been read and have been defined
* to valid values. Aplies missing parameters to defaults, as hard-coded
* in the library and ajusts parameters if necessary.
*/
{
gchar *err_msg = NULL;
if ((err_msg = gpiv_valid_check_parameters_read (valid_par, NULL))
!= NULL) {
gpiv_warning ("gpiv_valid_testadjust_parameters: %s", err_msg);
return err_msg;
}
if (valid_par->residu_type == GPIV_VALID_RESIDUTYPE__NORMMEDIAN) {
valid_par->residu_max = GPIV_RESIDU_MAX_NORMMEDIAN;
g_message ("gpiv_valid_testadjust_parameters:: adapting residu_max = %f",
valid_par->residu_max);
}
return err_msg;
}
void
gpiv_valid_print_parameters (FILE * fp,
const GpivValidPar *valid_par
)
/*-----------------------------------------------------------------------------
* DESCRIPTION:
* Prints parameters to fp_par_out
*
* PROTOTYPE LOCATATION:
* valid.h
*
* INPUTS:
*
* OUTPUTS:
*
* RETURNS:
*---------------------------------------------------------------------------*/
{
if (fp == stdout || fp == NULL) {
/* Peaklocking */
/* Outliers */
if (valid_par->subst_type__set)
printf ("%s.%s %d\n", GPIV_VALIDPAR_KEY,
VALIDPAR_KEY__SUBST_TYPE,
valid_par->subst_type);
if (valid_par->histo_type__set)
printf ("%s.%s %d\n", GPIV_VALIDPAR_KEY,
VALIDPAR_KEY__HISTO_TYPE,
valid_par->histo_type);
if (valid_par->residu_type__set)
printf ("%s.%s %d\n", GPIV_VALIDPAR_KEY,
VALIDPAR_KEY__RESIDU_TYPE,
valid_par->residu_type);
if (valid_par->residu_max__set)
printf ("%s.%s %f\n", GPIV_VALIDPAR_KEY,
VALIDPAR_KEY__RESIDU_MAX,
valid_par->residu_max);
if (valid_par->neighbors__set)
printf ("%s.%s %d\n", GPIV_VALIDPAR_KEY,
VALIDPAR_KEY__NEIGHBORS,
valid_par->neighbors);
if (valid_par->data_yield__set)
printf ("%s.%s %f\n", GPIV_VALIDPAR_KEY,
VALIDPAR_KEY__DATA_YIELD,
valid_par->data_yield);
} else {
/* Peaklocking */
/* Outliers */
if (valid_par->subst_type__set)
fprintf (fp, "%s.%s %d\n", GPIV_VALIDPAR_KEY,
VALIDPAR_KEY__SUBST_TYPE,
valid_par->subst_type);
if (valid_par->histo_type__set)
fprintf (fp, "%s.%s %d\n", GPIV_VALIDPAR_KEY,
VALIDPAR_KEY__HISTO_TYPE,
valid_par->histo_type);
if (valid_par->residu_type__set)
fprintf (fp, "%s.%s %d\n", GPIV_VALIDPAR_KEY,
VALIDPAR_KEY__RESIDU_TYPE,
valid_par->residu_type);
if (valid_par->residu_max__set)
fprintf (fp, "%s.%s %f\n", GPIV_VALIDPAR_KEY,
VALIDPAR_KEY__RESIDU_MAX,
valid_par->residu_max);
if (valid_par->neighbors__set)
fprintf (fp, "%s.%s %d\n", GPIV_VALIDPAR_KEY,
VALIDPAR_KEY__NEIGHBORS,
valid_par->neighbors);
if (valid_par->data_yield__set)
fprintf (fp, "%s.%s %f\n", GPIV_VALIDPAR_KEY,
VALIDPAR_KEY__DATA_YIELD,
valid_par->data_yield);
}
}
GpivValidPar *
gpiv_valid_cp_parameters (const GpivValidPar *valid_par_src
)
/*-----------------------------------------------------------------------------
*/
{
GpivValidPar *valid_par_dest = g_new0 (GpivValidPar, 1);
gpiv_valid_parameters_set (valid_par_dest, FALSE);
valid_ovwrt_parameters (valid_par_src, valid_par_dest, TRUE);
return valid_par_dest;
}
void
gpiv_valid_dupl_parameters (const GpivValidPar *valid_par_src,
GpivValidPar *valid_par_dest
)
/*-----------------------------------------------------------------------------
*/
{
valid_ovwrt_parameters (valid_par_src, valid_par_dest, FALSE);
}
GpivValidPar *
gpiv_valid_fread_hdf5_parameters(const gchar *fname
)
/*-----------------------------------------------------------------------------
* DESCRIPTION:
* Reads validation parameters from hdf5 data file
*
* PROTOTYPE LOCATATION:
* valid.h
*
* INPUTS:
* fname: complete file name
*
* OUTPUTS:
* valid_par: parameter structure
*
* RETURNS:
* NULL on success or *err_msg on failure
*-------------------------------------------------------------------------- */
{
GpivValidPar *valid_par = g_new0 (GpivValidPar, 1);
gchar *err_msg = NULL;
gint i;
/*
* HDF declarations
*/
hid_t file_id, group_par, group_id, attribute_id;
herr_t status;
if ((i = H5Fis_hdf5(fname)) == 0) {
err_msg = "gpiv_valid_fread_hdf5_parameters: not an hdf5 file";
gpiv_warning("%s", err_msg);
return NULL;
}
file_id = H5Fopen(fname, H5F_ACC_RDONLY, H5P_DEFAULT);
group_id = H5Gopen (file_id, "PIV");
H5Aiterate(group_id, NULL, (H5A_operator_t)attr_info, valid_par);
status = H5Gclose (group_id);
status = H5Fclose(file_id);
return valid_par;
}
gchar *
gpiv_valid_fwrite_hdf5_parameters(const gchar *fname,
const GpivValidPar *valid_par
)
/*-----------------------------------------------------------------------------
* DESCRIPTION:
* Writes validation parameters to an existing hdf5 data file
*
* PROTOTYPE LOCATATION:
* valid.h
*
* INPUTS:
* fname: complete file name
* valid_par: parameter structure
*
* OUTPUTS:
*
* RETURNS:
* NULL on success or *err_msg on failure
*-------------------------------------------------------------------------- */
{
gchar *err_msg = NULL;
int i;
/*
* HDF declarations
*/
hid_t file_id, dataspace_id, group_par, group_id, attribute_id;
hsize_t dims[1];
herr_t status;
if ((i = H5Fis_hdf5(fname)) == 0) {
err_msg = "gpiv_valid_fwrite_hdf5_parameters: not an hdf5 file";
gpiv_warning("%s", err_msg);
return err_msg;
}
file_id = H5Fopen(fname, H5F_ACC_RDWR, H5P_DEFAULT);
/* group_par = H5Gopen (file_id, "PARAMETERS"); */
group_id = H5Gopen (file_id, "PIV");
dims[0] = 1;
dataspace_id = H5Screate_simple(1, dims, NULL);
/*
* Outliers
*/
if (valid_par->data_yield__set) {
attribute_id = H5Acreate(group_id,
VALIDPAR_KEY__DATA_YIELD,
H5T_NATIVE_FLOAT,
dataspace_id, H5P_DEFAULT);
status = H5Awrite(attribute_id, H5T_NATIVE_FLOAT,
&valid_par->data_yield);
status = H5Aclose(attribute_id);
}
if (valid_par->residu_max__set) {
attribute_id = H5Acreate(group_id,
VALIDPAR_KEY__RESIDU_MAX,
H5T_NATIVE_FLOAT,
dataspace_id, H5P_DEFAULT);
status = H5Awrite(attribute_id, H5T_NATIVE_FLOAT,
&valid_par->residu_max);
status = H5Aclose(attribute_id);
}
if (valid_par->neighbors__set) {
attribute_id = H5Acreate(group_id,
VALIDPAR_KEY__NEIGHBORS,
H5T_NATIVE_INT,
dataspace_id, H5P_DEFAULT);
status = H5Awrite(attribute_id, H5T_NATIVE_INT,
&valid_par->neighbors);
status = H5Aclose(attribute_id);
}
if (valid_par->residu_type__set) {
attribute_id = H5Acreate(group_id,
VALIDPAR_KEY__RESIDU_TYPE,
H5T_NATIVE_INT,
dataspace_id, H5P_DEFAULT);
status = H5Awrite(attribute_id, H5T_NATIVE_INT,
&valid_par->residu_type);
status = H5Aclose(attribute_id);
}
if (valid_par->subst_type__set) {
attribute_id = H5Acreate(group_id,
VALIDPAR_KEY__SUBST_TYPE,
H5T_NATIVE_INT,
dataspace_id, H5P_DEFAULT);
status = H5Awrite(attribute_id, H5T_NATIVE_INT,
&valid_par->subst_type);
status = H5Aclose(attribute_id);
}
if (valid_par->histo_type__set) {
attribute_id = H5Acreate(group_id,
VALIDPAR_KEY__HISTO_TYPE,
H5T_NATIVE_INT,
dataspace_id, H5P_DEFAULT);
status = H5Awrite(attribute_id, H5T_NATIVE_INT,
&valid_par->histo_type);
status = H5Aclose(attribute_id);
}
status = H5Sclose(dataspace_id);
status = H5Gclose (group_id);
/* status = H5Gclose (group_par); */
status = H5Fclose(file_id);
return err_msg;
}
/*
* Local functions
*/
static void
valid_ovwrt_parameters (const GpivValidPar *valid_par_src,
GpivValidPar *valid_par_dest,
const gboolean force
)
/*-----------------------------------------------------------------------------
* DESCRIPTION:
* Copies validation parameters from valid_par_src
*
* INPUTS:
* valid_par_src: source validation parameters
* force: flag to force the copying, even if destination
* already exists
*
*
* RETURNS:
* GpivValidPar *
*---------------------------------------------------------------------------*/
{
if ((force && valid_par_src->subst_type__set)
|| (valid_par_src->subst_type__set
&& !valid_par_dest->subst_type__set)) {
valid_par_dest->subst_type = valid_par_src->subst_type;
valid_par_dest->subst_type__set = TRUE;
}
if ((force && valid_par_src->histo_type__set)
|| (valid_par_src->histo_type__set
&& !valid_par_dest->histo_type__set)) {
valid_par_dest->histo_type = valid_par_src->histo_type;
valid_par_dest->histo_type__set = TRUE;
}
if ((force && valid_par_src->residu_type__set)
|| (valid_par_src->residu_type__set
&& !valid_par_dest->residu_type__set)) {
valid_par_dest->residu_type = valid_par_src->residu_type;
valid_par_dest->residu_type__set = TRUE;
}
if ((force && valid_par_src->residu_max__set)
|| (valid_par_src->residu_max__set
&& !valid_par_dest->residu_max__set)) {
valid_par_dest->residu_max = valid_par_src->residu_max;
valid_par_dest->residu_max__set = TRUE;
}
if ((force && valid_par_src->neighbors__set)
|| (valid_par_src->neighbors__set
&& !valid_par_dest->neighbors__set)) {
valid_par_dest->neighbors = valid_par_src->neighbors;
valid_par_dest->neighbors__set = TRUE;
}
if ((force && valid_par_src->data_yield__set)
|| (valid_par_src->data_yield__set
&& !valid_par_dest->data_yield__set)) {
valid_par_dest->data_yield = valid_par_src->data_yield;
valid_par_dest->data_yield__set = TRUE;
}
}
static herr_t
attr_info(hid_t loc_id,
const char *name,
GpivValidPar * valid_par
)
/*-----------------------------------------------------------------------------
* DESCRIPTION:
* Operator function.
*
* PROTOTYPE LOCATATION:
* valid.h
*
* INPUTS:
*
* OUTPUTS:
*
* RETURNS:
*---------------------------------------------------------------------------*/
{
hid_t attribute_id, atype;
herr_t status;
/*
* Outliers
*/
if (strcmp(name, VALIDPAR_KEY__DATA_YIELD) == 0) {
attribute_id = H5Aopen_name(loc_id, name);
status = H5Aread(attribute_id, H5T_NATIVE_FLOAT,
&valid_par->data_yield);
status = H5Aclose(attribute_id);
valid_par->data_yield__set = TRUE;
}
if (strcmp(name, VALIDPAR_KEY__RESIDU_MAX) == 0) {
attribute_id = H5Aopen_name(loc_id, name);
status = H5Aread(attribute_id, H5T_NATIVE_FLOAT,
&valid_par->residu_max);
status = H5Aclose(attribute_id);
valid_par->residu_max__set = TRUE;
}
if (strcmp(name, VALIDPAR_KEY__NEIGHBORS) == 0) {
attribute_id = H5Aopen_name(loc_id, name);
status = H5Aread(attribute_id, H5T_NATIVE_INT,
&valid_par->neighbors);
status = H5Aclose(attribute_id);
valid_par->neighbors__set = TRUE;
}
if (strcmp(name, VALIDPAR_KEY__RESIDU_TYPE) == 0) {
attribute_id = H5Aopen_name(loc_id, name);
status = H5Aread(attribute_id, H5T_NATIVE_INT,
&valid_par->residu_type);
status = H5Aclose(attribute_id);
valid_par->residu_type__set = TRUE;
}
if (strcmp(name, VALIDPAR_KEY__SUBST_TYPE) == 0) {
attribute_id = H5Aopen_name(loc_id, name);
status = H5Aread(attribute_id, H5T_NATIVE_INT,
&valid_par->subst_type);
status = H5Aclose(attribute_id);
valid_par->subst_type__set = TRUE;
}
if (strcmp(name, VALIDPAR_KEY__HISTO_TYPE) == 0) {
attribute_id = H5Aopen_name(loc_id, name);
status = H5Aread(attribute_id, H5T_NATIVE_INT,
&valid_par->histo_type);
status = H5Aclose(attribute_id);
valid_par->histo_type__set = TRUE;
}
return 0;
}
static void
obtain_valdipar_fromline (char line[],
GpivValidPar *valid_par,
gboolean verbose
)
/*-----------------------------------------------------------------------------
* Scans a line to get a member of GpivValidPar
*/
{
char par_name[GPIV_MAX_CHARS];
if (line[0] != '#' && line[0] != '\n' && line[0] != ' '
&& line[0] != '\t') {
sscanf(line,"%s", par_name);
if (valid_par->data_yield__set == FALSE) {
valid_par->data_yield__set =
gpiv_scan_fph (GPIV_VALIDPAR_KEY,
VALIDPAR_KEY__DATA_YIELD, TRUE,
line, par_name, &valid_par->data_yield,
verbose, NULL);
}
/*
* Optional:
*/
if (valid_par->residu_max__set == FALSE) {
valid_par->residu_max__set =
gpiv_scan_fph (GPIV_VALIDPAR_KEY,
VALIDPAR_KEY__RESIDU_MAX, TRUE,
line, par_name, &valid_par->residu_max,
verbose, NULL);
}
if (valid_par->neighbors__set == FALSE) {
valid_par->neighbors__set =
gpiv_scan_iph (GPIV_VALIDPAR_KEY,
VALIDPAR_KEY__NEIGHBORS, TRUE,
line, par_name, &valid_par->neighbors,
verbose, NULL);
}
/*
* Optional:
*/
if (valid_par->residu_type__set == FALSE) {
valid_par->residu_type__set =
gpiv_scan_iph (GPIV_VALIDPAR_KEY,
VALIDPAR_KEY__RESIDU_TYPE, TRUE,
line, par_name, (int *) &valid_par->residu_type,
verbose, NULL);
}
if (valid_par->subst_type__set == FALSE) {
valid_par->subst_type__set =
gpiv_scan_iph (GPIV_VALIDPAR_KEY,
VALIDPAR_KEY__SUBST_TYPE, TRUE,
line, par_name, (int *) &valid_par->subst_type,
verbose, NULL);
}
if (valid_par->histo_type__set == FALSE) {
valid_par->histo_type__set =
gpiv_scan_iph (GPIV_VALIDPAR_KEY,
VALIDPAR_KEY__HISTO_TYPE, TRUE,
line, par_name, &valid_par->histo_type,
verbose, NULL);
}
}
}
#ifdef ENABLE_MPI
void
gpiv_valid_mpi_bcast_validpar (GpivValidPar *valid_par)
/*-----------------------------------------------------------------------------
* Broadcasts valid_par
*/
{
if (
MPI_Bcast(&valid_par->data_yield, 1, MPI_FLOAT, 0, MPI_COMM_WORLD)
!= MPI_SUCCESS
|| MPI_Bcast(&valid_par->data_yield__set, 1, MPI_INT, 0, MPI_COMM_WORLD)
!= MPI_SUCCESS
|| MPI_Bcast(&valid_par->residu_max, 1, MPI_FLOAT, 0, MPI_COMM_WORLD)
!= MPI_SUCCESS
|| MPI_Bcast(&valid_par->residu_max__set, 1, MPI_INT, 0, MPI_COMM_WORLD)
!= MPI_SUCCESS
|| MPI_Bcast(&valid_par->neighbors, 1, MPI_INT, 0, MPI_COMM_WORLD)
!= MPI_SUCCESS
|| MPI_Bcast(&valid_par->neighbors__set, 1, MPI_INT, 0, MPI_COMM_WORLD)
!= MPI_SUCCESS
|| MPI_Bcast(&valid_par->residu_type, 1, MPI_INT, 0, MPI_COMM_WORLD)
!= MPI_SUCCESS
|| MPI_Bcast(&valid_par->residu_type__set, 1, MPI_INT, 0, MPI_COMM_WORLD)
!= MPI_SUCCESS
|| MPI_Bcast(&valid_par->subst_type, 1, MPI_INT, 0, MPI_COMM_WORLD)
!= MPI_SUCCESS
|| MPI_Bcast(&valid_par->subst_type__set, 1, MPI_INT, 0, MPI_COMM_WORLD)
!= MPI_SUCCESS
|| MPI_Bcast(&valid_par->histo_type, 1, MPI_INT, 0, MPI_COMM_WORLD)
!= MPI_SUCCESS
|| MPI_Bcast(&valid_par->histo_type__set, 1, MPI_INT, 0, MPI_COMM_WORLD)
!= MPI_SUCCESS
) {
gpiv_error("ALL SHIPS AND PIRATES! mpi_bcast_validpar: An error ocurred in MPI_Bcast");
}
}
#endif /* ENABLE_MPI */
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