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/*********************************************************************
* Copyright 1992, University Corporation for Atmospheric Research
* See netcdf/README file for copying and redistribution conditions.
*
* Purpose: Implements class interface for netCDF over C interface
*
* $Header: /hdf/src/master/dist/mfhdf/c++/netcdf.cc,v 1.2 1993/04/30 20:29:45 koziol Exp $
*********************************************************************/
#include <string.h>
#include <stdlib.h>
#include "netcdf.hh"
#ifndef TRUE
#define TRUE 1
#define FALSE 0
#endif
static const int ncGlobal = NC_GLOBAL; // psuedo-variable for global attributes
static const int ncBad = -1; // failure return for netCDF C interface
NcFile::~NcFile( void )
{
(void) close();
}
NcBool NcFile::is_valid( void ) const
{
return the_id != ncBad;
}
int NcFile::num_dims( void ) const
{
int num = 0;
if (is_valid())
ncinquire(the_id, &num, 0, 0, 0);
return num;
}
int NcFile::num_vars( void ) const
{
int num = 0;
if (is_valid())
ncinquire(the_id, 0, &num, 0, 0);
return num;
}
int NcFile::num_atts( void ) const
{
int num = 0;
if (is_valid())
ncinquire(the_id, 0, 0, &num, 0);
return num;
}
NcDim* NcFile::get_dim( NcToken name ) const
{
int dimid = ncdimid(the_id, name);
return get_dim(dimid);
}
NcVar* NcFile::get_var( NcToken name ) const
{
int varid = ncvarid(the_id, name);
return get_var(varid);
}
NcAtt * NcFile::get_att( NcToken aname ) const
{
return is_valid() ? globalv->get_att(aname) : 0;
}
NcDim* NcFile::get_dim( int i ) const
{
if (! is_valid() || i < 0 || i >= num_dims())
return 0;
return dimensions[i];
}
NcVar* NcFile::get_var( int i ) const
{
if (! is_valid() || i < 0 || i >= num_vars())
return 0;
return variables[i];
}
NcAtt* NcFile::get_att( int n ) const
{
return is_valid() ? globalv->get_att(n) : 0;
}
NcDim* NcFile::rec_dim( ) const
{
if (! is_valid())
return 0;
int recdim;
ncinquire(the_id, 0, 0, 0, &recdim);
if (recdim == -1)
return 0;
return get_dim(recdim);
}
NcDim* NcFile::add_dim(NcToken name, long size)
{
if (!is_valid() || !define_mode())
return 0;
int n = num_dims();
NcDim* dimp = new NcDim(this, name, size);
dimensions[n] = dimp; // for garbage collection on close()
return dimp;
}
NcDim* NcFile::add_dim(NcToken name)
{
return add_dim(name, NC_UNLIMITED);
}
// To create scalar, 1-dimensional, ..., 5-dimensional variables, just supply
// as many dimension arguments as necessary
NcVar* NcFile::add_var(NcToken name, NcType type, // scalar to 5D var
const NcDim* dim0,
const NcDim* dim1,
const NcDim* dim2,
const NcDim* dim3,
const NcDim* dim4)
{
if (!is_valid() || !define_mode())
return 0;
int dims[5];
int ndims = 0;
if (dim0) {
ndims++;
dims[0] = dim0->id();
if (dim1) {
ndims++;
dims[1] = dim1->id();
if (dim2) {
ndims++;
dims[2] = dim2->id();
if (dim3) {
ndims++;
dims[3] = dim3->id();
if (dim4) {
ndims++;
dims[4] = dim4->id();
}
}
}
}
}
int n = num_vars();
NcVar* varp =
new NcVar(this, ncvardef(the_id, name, (nc_type) type, ndims, dims));
variables[n] = varp;
return varp;
}
// For variables with more than 5 dimensions, use n-dimensional interface
// with vector of dimensions.
NcVar* NcFile::add_var(NcToken name, NcType type, int ndims, const NcDim* dims)
{
if (!is_valid() || !define_mode())
return 0;
int *dimids = new int[ndims];
for (int i=0; i < ndims; i++)
dimids[i] = dims[i].id();
int n = num_vars();
NcVar* varp =
new NcVar(this, ncvardef(the_id, name, (nc_type) type, ndims, dimids));
variables[n] = varp;
return varp;
}
#define NcFile_add_scalar_att(TYPE) \
NcBool NcFile::add_att(NcToken aname, TYPE val) \
{ \
return globalv->add_att(aname, val); \
}
NcFile_add_scalar_att(char)
NcFile_add_scalar_att(short)
NcFile_add_scalar_att(int)
NcFile_add_scalar_att(long)
NcFile_add_scalar_att(float)
NcFile_add_scalar_att(double)
NcFile_add_scalar_att(const char*)
#define NcFile_add_vector_att(TYPE) \
NcBool NcFile::add_att(NcToken aname, int n, const TYPE* val) \
{ \
return globalv->add_att(aname, n, val); \
}
NcFile_add_vector_att(char)
NcFile_add_vector_att(short)
NcFile_add_vector_att(int)
NcFile_add_vector_att(long)
NcFile_add_vector_att(float)
NcFile_add_vector_att(double)
NcBool NcFile::set_fill( FillMode a_mode )
{
return ncsetfill(the_id, a_mode) != ncBad;
}
enum NcFile::FillMode NcFile::get_fill( void )
{
int mode = ncsetfill(the_id, Fill);
if (mode == NC_FILL)
return NcFile::Fill;
if (mode == NC_NOFILL) {
ncsetfill(the_id, NoFill); // reset it
return NcFile::NoFill;
}
return NcFile::Bad;
}
NcBool NcFile::sync( void )
{
if (ncsync(the_id) == ncBad)
return 0;
for (int i = 0; i < num_dims(); i++)
dimensions[i] = new NcDim(this, i);
for (i = 0; i < num_vars(); i++)
variables[i] = new NcVar(this, i);
return 1;
}
NcBool NcFile::close( void )
{
if (the_id == ncBad)
return 0;
for (int i = 0; i < num_dims(); i++)
delete dimensions[i];
for (i = 0; i < num_vars(); i++)
delete variables[i];
delete [] dimensions;
delete [] variables;
delete globalv;
int old_id = the_id;
the_id = ncBad;
return ncclose(old_id) != ncBad;
}
NcBool NcFile::abort( void )
{
return ncabort(the_id) != ncBad;
}
NcBool NcFile::define_mode( void )
{
if (! is_valid())
return FALSE;
if (in_define_mode)
return TRUE;
if (ncredef(the_id) == ncBad)
return FALSE;
in_define_mode = 1;
return TRUE;
}
NcBool NcFile::data_mode( void )
{
if (! is_valid())
return FALSE;
if (! in_define_mode)
return TRUE;
if (ncendef(the_id) == ncBad)
return FALSE;
in_define_mode = 0;
return TRUE;
}
int NcFile::id( void ) const
{
return the_id;
}
NcNewFile::NcNewFile( const char * path, CreateMode mode)
{
dimensions = new NcDim*[MAX_NC_DIMS];
variables = new NcVar*[MAX_NC_VARS];
NcError err(NcError::silent_nonfatal); // because constructor must not fail
the_id = nccreate(path, mode);
in_define_mode = 1;
globalv = new NcVar(this, ncGlobal);
}
NcOldFile::NcOldFile( const char * path, OpenMode mode)
{
dimensions = new NcDim*[MAX_NC_DIMS];
variables = new NcVar*[MAX_NC_VARS];
NcError err(NcError::silent_nonfatal); // because constructor must not fail
the_id = ncopen(path, mode);
in_define_mode = 0;
for (int i = 0; i < num_dims(); i++)
dimensions[i] = new NcDim(this, i);
for (i = 0; i < num_vars(); i++)
variables[i] = new NcVar(this, i);
globalv = new NcVar(this, ncGlobal);
}
NcToken NcDim::name( void ) const
{
return the_name;
}
long NcDim::size( void ) const
{
long sz = 0;
if (the_file)
ncdiminq(the_file->id(), the_id, (char *)0, &sz);
return sz;
}
NcBool NcDim::is_valid( void ) const
{
return the_file->is_valid() && the_id != ncBad;
}
NcBool NcDim::is_unlimited( void ) const
{
if (!the_file)
return FALSE;
int recdim;
ncinquire(the_file->id(), 0, 0, 0, &recdim);
return the_id == recdim;
}
NcBool NcDim::rename(NcToken newname)
{
NcBool ret = ncdimrename(the_file->id(), the_id, newname) != ncBad;
if (ret) {
delete [] the_name;
the_name = new char[1 + strlen(newname)];
strcpy(the_name, newname);
}
return ret;
}
int NcDim::id( void ) const
{
return the_id;
}
NcDim::NcDim(const NcFile* nc, int id)
: the_file(nc), the_id(id)
{
char nam[MAX_NC_NAME];
if (the_file && ncdiminq(the_file->id(), the_id, nam, 0) != ncBad) {
the_name = new char[strlen(nam) + 1];
strcpy(the_name, nam);
} else {
the_name = 0;
}
}
NcDim::NcDim(NcFile* nc, NcToken name, long sz)
: the_file(nc)
{
the_id = ncdimdef(the_file->id(), name, sz);
if (the_id != ncBad) {
the_name = new char[strlen(name) + 1];
strcpy(the_name, name);
} else
the_name = 0;
}
NcDim::~NcDim( void )
{
delete [] the_name;
}
#define Nc_as(TYPE) name2(as_,TYPE)
#define NcTypedComponent_as(TYPE) \
TYPE NcTypedComponent::Nc_as(TYPE)( int n ) const \
{ \
return values()->Nc_as(TYPE)(n); \
}
NcTypedComponent_as(ncbyte)
NcTypedComponent_as(char)
NcTypedComponent_as(short)
NcTypedComponent_as(long)
NcTypedComponent_as(float)
NcTypedComponent_as(double)
char* NcTypedComponent::as_string( int n ) const
{
return values()->as_string(n);
}
NcTypedComponent::NcTypedComponent ( NcFile* nc )
: the_file(nc)
{}
NcValues* NcTypedComponent::get_space( void ) const
{
NcValues* valp;
switch (type()) {
case ncFloat:
valp = new NcValues_float(num_vals());
break;
case ncDouble:
valp = new NcValues_double(num_vals());
break;
case ncLong:
valp = new NcValues_long(num_vals());
break;
case ncInt:
valp = new NcValues_int(num_vals());
break;
case ncShort:
valp = new NcValues_short(num_vals());
break;
case ncByte:
case ncChar:
valp = new NcValues_char(num_vals());
break;
case ncNoType:
default:
valp = 0;
}
return valp;
}
NcVar::~NcVar( void )
{
delete[] the_cur;
delete[] the_name;
}
NcToken NcVar::name( void ) const
{
return the_name;
}
NcType NcVar::type( void ) const
{
nc_type typ;
ncvarinq(the_file->id(), the_id, 0, &typ, 0, 0, 0);
return (NcType) typ;
}
NcBool NcVar::is_valid( void ) const
{
return the_file->is_valid() && the_id != ncBad;
}
int NcVar::num_dims( void ) const
{
int ndim;
ncvarinq(the_file->id(), the_id, 0, 0, &ndim, 0, 0);
return ndim;
}
// The i-th dimension for this variable
NcDim* NcVar::get_dim( int i ) const
{
int ndim;
int dims[MAX_NC_DIMS];
if(ncvarinq(the_file->id(), the_id, 0, 0, &ndim, dims, 0) == ncBad ||
i < 0 || i >= ndim)
return 0;
return the_file->get_dim(dims[i]);
}
const long* NcVar::edges( void ) const // edge lengths (dimension sizes)
{
long* evec = new long[num_dims()];
for(int i=0; i < num_dims(); i++)
evec[i] = get_dim(i)->size();
return evec;
}
int NcVar::num_atts( void ) const // handles variable and global atts
{
int natt = 0;
if (the_file->is_valid())
if (the_id == ncGlobal)
natt = the_file->num_atts();
else
ncvarinq(the_file->id(), the_id, 0, 0, 0, 0, &natt);
return natt;
}
NcAtt * NcVar::get_att( NcToken aname ) const
{
NcAtt* att = new NcAtt(the_file, this, aname);
return att;
}
NcAtt * NcVar::get_att( int n ) const
{
if (n < 0 || n >= num_atts())
return 0;
NcToken aname = attname(n);
NcAtt *ap = get_att(aname);
delete [] (char *)aname;
return ap;
}
long NcVar::num_vals( void ) const
{
long prod = 1;
NcDim* dim;
for (int d = 0; dim = get_dim(d); d++)
prod *= dim->size();
return prod;
}
NcValues* NcVar::values( void ) const
{
int ndims = num_dims();
long crnr[MAX_NC_DIMS];
long edgs[MAX_NC_DIMS];
for (int i = 0; i < ndims; i++) {
crnr[i] = 0;
edgs[i] = get_dim(i)->size();
}
NcValues* valp = get_space();
if (ncvarget(the_file->id(), the_id, crnr, edgs, valp->base()) == ncBad)
return 0;
return valp;
}
#define NcVar_put_array(TYPE) \
NcBool NcVar::put( const TYPE* vals, \
long edge0, \
long edge1, \
long edge2, \
long edge3, \
long edge4) \
{ \
if (type() != NcTypeEnum(TYPE)) \
return FALSE; \
if (! the_file->data_mode()) \
return FALSE; \
long count[5]; \
count[0] = edge0; \
count[1] = edge1; \
count[2] = edge2; \
count[3] = edge3; \
count[4] = edge4; \
for (int i = 0; i < 5; i++) { \
if (count[i]) { \
if (num_dims() < i) \
return FALSE; \
} else \
break; \
} \
static long start[5] = {0, 0, 0, 0, 0}; \
for (int j = 0; j < 5; j++) { \
start[j] = the_cur[j]; \
} \
return ncvarput(the_file->id(), the_id, start, count, vals) != ncBad; \
}
NcVar_put_array(char)
NcVar_put_array(short)
NcVar_put_array(long)
NcVar_put_array(int)
NcVar_put_array(float)
NcVar_put_array(double)
#define NcVar_put_nd_array(TYPE) \
NcBool NcVar::put( const TYPE* vals, const long* count ) \
{ \
if (type() != NcTypeEnum(TYPE)) \
return FALSE; \
if (! the_file->data_mode()) \
return FALSE; \
long start[MAX_NC_DIMS]; \
for (int i = 0; i < num_dims(); i++) \
start[i] = the_cur[i]; \
return ncvarput(the_file->id(), the_id, start, count, vals) != ncBad; \
}
NcVar_put_nd_array(char)
NcVar_put_nd_array(short)
NcVar_put_nd_array(long)
NcVar_put_nd_array(int)
NcVar_put_nd_array(float)
NcVar_put_nd_array(double)
#define NcVar_get_array(TYPE) \
NcBool NcVar::get( TYPE* vals, \
long edge0, \
long edge1, \
long edge2, \
long edge3, \
long edge4) const \
{ \
if (type() != NcTypeEnum(TYPE)) \
return FALSE; \
if (! the_file->data_mode()) \
return FALSE; \
long count[5]; \
count[0] = edge0; \
count[1] = edge1; \
count[2] = edge2; \
count[3] = edge3; \
count[4] = edge4; \
for (int i = 0; i < 5; i++) { \
if (count[i]) { \
if (num_dims() < i) \
return FALSE; \
} else \
break; \
} \
static long start[5] = {0, 0, 0, 0, 0}; \
for (int j = 0; j < 5; j++) { \
start[j] = the_cur[j]; \
} \
return ncvarget(the_file->id(), the_id, start, count, vals) != ncBad; \
}
NcVar_get_array(char)
NcVar_get_array(short)
NcVar_get_array(long)
NcVar_get_array(int)
NcVar_get_array(float)
NcVar_get_array(double)
#define NcVar_get_nd_array(TYPE) \
NcBool NcVar::get( TYPE* vals, const long* count ) const \
{ \
if (type() != NcTypeEnum(TYPE)) \
return FALSE; \
if (! the_file->data_mode()) \
return FALSE; \
long start[MAX_NC_DIMS]; \
for (int i = 0; i < num_dims(); i++) \
start[i] = the_cur[i]; \
return ncvarget(the_file->id(), the_id, start, count, vals) != ncBad; \
}
NcVar_get_nd_array(char)
NcVar_get_nd_array(short)
NcVar_get_nd_array(long)
NcVar_get_nd_array(int)
NcVar_get_nd_array(float)
NcVar_get_nd_array(double)
// If no args, set cursor to all zeros. Else set initial elements of cursor
// to args provided, rest to zeros.
NcBool NcVar::set_cur(long c0, long c1, long c2, long c3, long c4)
{
long t[5];
t[0] = c0;
t[1] = c1;
t[2] = c2;
t[3] = c3;
t[4] = c4;
for(int j = 0; j < 5; j++) {
if (t[j] == -1) {
if (num_dims() < j)
return FALSE; // too many for variable's dimensionality
for (int i = 0; i < j; i++) {
if (t[i] >= get_dim(i)->size())
return FALSE; // too big for dimension
the_cur[i] = t[i];
}
for(i = j; i < num_dims(); i++)
the_cur[i] = 0;
return TRUE;
}
}
}
NcBool NcVar::set_cur(long *cur)
{
for(int i = 0; i < num_dims(); i++) {
if (cur[i] >= get_dim(i)->size())
return FALSE;
the_cur[i] = cur[i];
}
return TRUE;
}
#define NcVar_add_scalar_att(TYPE) \
NcBool NcVar::add_att(NcToken aname, TYPE val) \
{ \
if (! the_file->define_mode()) \
return FALSE; \
if (ncattput(the_file->id(), the_id, aname, (nc_type) NcTypeEnum(TYPE), \
1, &val) == ncBad) \
return FALSE; \
return TRUE; \
} \
NcVar_add_scalar_att(char)
NcVar_add_scalar_att(short)
NcVar_add_scalar_att(long)
NcVar_add_scalar_att(double)
NcBool NcVar::add_att(NcToken aname, int val)
{
if (! the_file->define_mode())
return FALSE;
if (ncattput(the_file->id(), the_id, aname, (nc_type) ncLong,
1, &val) == ncBad)
return FALSE;
return TRUE;
}
NcBool NcVar::add_att(NcToken aname, float val)
{
if (! the_file->define_mode())
return FALSE;
float fval = (float) val; // workaround for bug, val passed as double??
if (ncattput(the_file->id(), the_id, aname, (nc_type) ncFloat,
1, &fval) == ncBad)
return FALSE;
return TRUE;
}
NcBool NcVar::add_att(NcToken aname, const char* val)
{
if (! the_file->define_mode())
return FALSE;
if (ncattput(the_file->id(), the_id, aname, (nc_type) ncChar,
strlen(val) + 1, val) == ncBad)
return FALSE;
return TRUE;
}
#define NcVar_add_vector_att(TYPE) \
NcBool NcVar::add_att(NcToken aname, int len, const TYPE* vals) \
{ \
if (! the_file->define_mode()) \
return FALSE; \
if (ncattput(the_file->id(), the_id, aname, (nc_type) NcTypeEnum(TYPE), \
len, vals) == ncBad) \
return FALSE; \
return TRUE; \
}
NcVar_add_vector_att(char)
NcVar_add_vector_att(short)
NcVar_add_vector_att(long)
NcVar_add_vector_att(int)
NcVar_add_vector_att(float)
NcVar_add_vector_att(double)
NcBool NcVar::rename(NcToken newname)
{
NcBool ret = ncvarrename(the_file->id(), the_id, newname) != ncBad;
if (ret) {
delete [] the_name;
the_name = new char [1 + strlen(newname)];
strcpy(the_name, newname);
}
return ret;
}
int NcVar::id( void ) const
{
return the_id;
}
NcVar::NcVar(NcFile* nc, int id)
: NcTypedComponent(nc), the_id(id)
{
char nam[MAX_NC_NAME];
if (the_file
&& ncvarinq(the_file->id(), the_id, nam, 0, 0, 0, 0) != ncBad) {
the_name = new char[1 + strlen(nam)];
strcpy(the_name, nam);
} else {
the_name = 0;
}
init_cur();
}
int NcVar::attnum( NcToken attrname ) const
{
for(int num=0; num < num_atts(); num++) {
char aname[MAX_NC_NAME];
ncattname(the_file->id(), the_id, num, aname);
if (strcmp(aname, attrname) == 0)
break;
}
return num; // num_atts() if no such attribute
}
NcToken NcVar::attname( int attnum ) const // caller must delete[]
{
if (attnum < 0 || attnum >= num_atts())
return 0;
char aname[MAX_NC_NAME];
if (ncattname(the_file->id(), the_id, attnum, aname) == ncBad)
return 0;
char* rname = new char[1 + strlen(aname)];
strcpy(rname, aname);
return rname;
}
void NcVar::init_cur( void )
{
the_cur = new long[MAX_NC_DIMS]; // *** don't know num_dims() yet?
for(int i = 0; i < MAX_NC_DIMS; i++)
the_cur[i] = 0;
}
NcAtt::NcAtt(NcFile* nc, const NcVar* var, NcToken name)
: NcTypedComponent(nc), the_variable(var)
{
the_name = new char[1 + strlen(name)];
strcpy(the_name, name);
}
NcAtt::NcAtt(NcFile* nc, NcToken name)
: NcTypedComponent(nc), the_variable(NULL)
{
the_name = new char[1 + strlen(name)];
strcpy(the_name, name);
}
NcAtt::~NcAtt( void )
{
delete [] the_name;
}
NcToken NcAtt::name( void ) const
{
return the_name;
}
NcType NcAtt::type( void ) const
{
nc_type typ;
ncattinq(the_file->id(), the_variable->id(), the_name, &typ, 0);
return (NcType) typ;
}
long NcAtt::num_vals( void ) const
{
int len;
ncattinq(the_file->id(), the_variable->id(), the_name, 0, &len);
return len;
}
NcBool NcAtt::is_valid( void ) const
{
return the_file->is_valid() &&
the_variable->is_valid() &&
ncattinq(the_file->id(), the_variable->id(), the_name, 0, 0) != ncBad;
}
NcValues* NcAtt::values( void ) const
{
NcValues* valp = get_space();
if (ncattget(the_file->id(),
the_variable->id(),
the_name,
valp->base()) == ncBad) {
delete valp;
return 0;
}
return valp;
}
NcBool NcAtt::rename(NcToken newname)
{
return ncattrename(the_file->id(), the_variable->id(),
the_name, newname) != ncBad;
}
NcBool NcAtt::remove( void )
{
return ncattdel(the_file->id(), the_variable->id(), the_name) != ncBad;
}
NcError::NcError( Behavior b )
{
the_old_state = ncopts; // global variable in C interface
the_old_err = ncerr; // global variable in C interface
ncopts = (int) b;
}
NcError::~NcError( void )
{
ncopts = the_old_state;
ncerr = the_old_err;
}
int NcError::get_err( void ) // returns most recent error
{
return ncerr;
}
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