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/****************************************************************************
* NCSA HDF *
* Software Development Group *
* National Center for Supercomputing Applications *
* University of Illinois at Urbana-Champaign *
* 605 E. Springfield, Champaign IL 61820 *
* *
* For conditions of distribution and use, see the accompanying *
* hdf/COPYING file. *
* *
****************************************************************************/
/* $Id: mfhdfp.h,v 1.1 1997/05/26 20:00:37 sxu Exp $ */
#ifndef _MFSD_H_
#define _MFSD_H_
#ifndef HDF
#define HDF 1
#endif
/* change this back if it causes problems on other machines than the Alhpa-QAK */
/* Reverse back to the previous way. AKC */
#include "hdf.h"
#include "netcdf.h"
#ifdef OLD_WAY
#include "local_nc.h"
#endif /* OLD_WAY */
#define SD_UNLIMITED NC_UNLIMITED /* use this as marker for unlimited dimension */
#define SD_NOFILL NC_NOFILL
#define SD_FILL NC_FILL
#define SD_DIMVAL_BW_COMP 1
#define SD_DIMVAL_BW_INCOMP 0
#define SD_RAGGED -1 /* marker for ragged dimension */
#ifdef __cplusplus
extern "C" {
#endif
extern int32 SDstart
(const char *name, int32 access);
extern intn SDend
(int32 fid);
extern intn SDfileinfo
(int32 fid, int32 *datasets, int32 *attrs);
extern int32 SDselect
(int32 fid, int32 index);
extern intn SDgetinfo
(int32 sdsid, char *name, int32 *rank, int32 *dimsizes,
int32 *nt, int32 *nattr);
#ifndef __CSTAR__
extern intn SDreaddata
(int32 sdsid, int32 *start, int32 *stride, int32 *end, VOIDP data);
#endif
extern uint16 SDgerefnumber
(int32 sdsid);
extern int32 SDnametoindex
(int32 fid, char *name);
extern intn SDgetrange
(int32 sdsid, VOIDP pmax, VOIDP pmin);
extern int32 SDcreate
(int32 fid, char *name, int32 nt, int32 rank, int32 *dimsizes);
extern int32 SDgetdimid
(int32 sdsid, intn number);
extern intn SDsetdimname
(int32 id, char *name);
extern intn SDendaccess
(int32 id);
extern intn SDsetrange
(int32 sdsid, VOIDP pmax, VOIDP pmin);
extern intn SDsetattr
(int32 id, char *name, int32 nt, int32 count, VOIDP data);
extern intn SDattrinfo
(int32 id, int32 index, char *name, int32 *nt, int32 *count);
extern intn SDreadattr
(int32 id, int32 index, VOIDP buf);
#ifndef __CSTAR__
extern intn SDwritedata
(int32 sdsid, int32 *start, int32 *stride, int32 *end, VOIDP data);
#endif
extern intn SDsetdatastrs
(int32 sdsid, char *l, char *u, char *f, char *c);
extern intn SDsetcal
(int32 sdsid, float64 cal, float64 cale, float64 ioff,
float64 ioffe, int32 nt);
extern intn SDsetfillvalue
(int32 sdsid, VOIDP val);
extern intn SDgetfillvalue
(int32 sdsid, VOIDP val);
extern intn SDsetfillmode
(int32 id, intn fillmode);
extern intn SDgetdatastrs
(int32 sdsid, char *l, char *u, char *f, char *c, intn len);
extern intn SDgetcal
(int32 sdsid, float64 *cal, float64 *cale, float64 *ioff,
float64 *ioffe, int32 *nt);
extern intn SDsetdimstrs
(int32 id, char *l, char *u, char *f);
extern intn SDsetdimscale
(int32 id, int32 count, int32 nt, VOIDP data);
extern intn SDgetdimscale
(int32 id, VOIDP data);
extern intn SDdiminfo
(int32 id, char *name, int32 *size, int32 *nt, int32 *nattr);
extern intn SDgetdimstrs
(int32 id, char *l, char *u, char *f, intn len);
extern intn SDsetexternalfile
(int32 id, char *filename, int32 offset);
extern intn SDsetnbitdataset
(int32 id, intn start_bit, intn bit_len, intn sign_ext, intn fill_one);
extern intn SDsetcompress
(int32 id, int32 type, comp_info *c_info);
extern int32 SDfindattr
(int32 id, char *attrname);
extern int32 SDidtoref
(int32 id);
extern int32 SDreftoindex
(int32 fid, int32 ref);
extern int32 SDisrecord
(int32 id);
extern intn SDiscoordvar
(int32 id);
extern intn SDsetaccesstype
(int32 id, uintn accesstype);
extern intn SDsetblocksize
(int32 sdsid, int32 block_size);
extern intn SDsetdimval_comp
(int32 dimid, intn compt_mode);
extern intn SDisdimval_bwcomp
(int32 dimid);
/*====================== Chunking Routines ================================*/
/* Bit - flags used for SDsetchunk() and SDgetChunkInfo() */
#define HDF_NONE 0x0
#define HDF_CHUNK 0x1
#define HDF_COMP 0x3
#define HDF_NBIT 0x5
/* Cache flags */
#define HDF_CACHEALL 0x1
/* Chunk Defintion */
typedef union hdf_chunk_def_u
{
/* Chunk Lengths only */
int32 chunk_lengths[MAX_VAR_DIMS]; /* chunk lengths along each dimension */
struct
{ /* For Compression info */
int32 chunk_lengths[MAX_VAR_DIMS]; /* chunk lengths along each dimension */
int32 comp_type; /* Compression type */
int32 model_type; /* Compression model type */
comp_info cinfo; /* Compression info struct */
model_info minfo; /* Compression model info struct */
}comp;
struct
{ /* For NBIT */
int32 chunk_lengths[MAX_VAR_DIMS]; /* chunk lengths along each dimension */
intn start_bit;
intn bit_len;
intn sign_ext;
intn fill_one;
} nbit;
} HDF_CHUNK_DEF;
/******************************************************************************
NAME
SDsetchunk -- make SDS a chunked SDS
DESCRIPTION
This routine makes the SDS a chunked SDS according to the chunk
definition passed in.
The dataset currently cannot be special already. i.e. NBIT,
COMPRESSED, or EXTERNAL. This is an Error.
The defintion of the HDF_CHUNK_DEF union with relvant fields is:
typedef union hdf_chunk_def_u
{
int32 chunk_lengths[MAX_VAR_DIMS]; Chunk lengths along each dimension
struct
{
int32 chunk_lengths[MAX_VAR_DIMS]; Chunk lengths along each dimension
int32 comp_type; Compression type
comp_info cinfo; Compression info struct
}comp;
} HDF_CHUNK_DEF
The simplist is the 'chunk_lengths' array specifiying chunk
lengths for each dimension where the 'flags' argument set to
'HDF_CHUNK';
COMPRESSION is set by using the 'HDF_CHUNK_DEF' structure to set the
appropriate compression information along with the required chunk lengths
for each dimension. The compression information is the same as
that set in 'SDsetcompress()'. The bit-or'd'flags' argument' is set to
'HDF_CHUNK | HDF_COMP'.
See the example in pseudo-C below for further usage.
The maximum number of Chunks in an HDF file is 65,535.
The dataset currently cannot have an UNLIMITED dimension.
The performance of the SDxxx interface with chunking is greatly
affected by the users access pattern over the dataset and by
the maximum number of chunks set in the chunk cache. The cache contains
the Least Recently Used(LRU cache replacment policy) chunks. See the
routine SDsetchunkcache() for further info on the chunk cache and how
to set the maximum number of chunks in the chunk cache. A default chunk
cache is always created.
The following example shows the organization of chunks for a 2D array.
e.g. 4x4 array with 2x2 chunks. The array shows the layout of
chunks in the chunk array.
4 ---------------------
| | |
Y | (0,1) | (1,1) |
^ | | |
| 2 ---------------------
| | | |
| | (0,0) | (1,0) |
| | | |
| ---------------------
| 0 2 4
---------------> X
--Without compression--:
{
HDF_CHUNK_DEF chunk_def;
.......
-- Set chunk lengths --
chunk_def.chunk_lengths[0]= 2;
chunk_def.chunk_lengths[1]= 2;
-- Set Chunking --
SDsetchunk(sdsid, chunk_def, HDF_CHUNK);
......
}
--With compression--:
{
HDF_CHUNK_DEF chunk_def;
.......
-- Set chunk lengths first --
chunk_def.chunk_lengths[0]= 2;
chunk_def.chunk_lengths[1]= 2;
-- Set compression --
chunk_def.comp.cinfo.deflate.level = 9;
chunk_def.comp.comp_type = COMP_CODE_DEFLATE;
-- Set Chunking with Compression --
SDsetchunk(sdsid, chunk_def, HDF_CHUNK | HDF_COMP);
......
}
RETURNS
SUCCEED/FAIL
******************************************************************************/
extern intn SDsetchunk
(int32 sdsid, /* IN: sds access id */
HDF_CHUNK_DEF chunk_def, /* IN: chunk definition */
int32 flags /* IN: flags */);
/******************************************************************************
NAME
SDgetchunkinfo -- get Info on SDS
DESCRIPTION
This routine gets any special information on the SDS. If its chunked,
chunked and compressed or just a regular SDS. Currently it will only
fill the array of chunk lengths for each dimension as specified in
the 'HDF_CHUNK_DEF' union. You can pass in a NULL for 'chunk_def'
if don't want the chunk lengths for each dimension.
Additionaly if successfull it will return a bit-or'd value in 'flags'
indicating if the SDS is:
Chunked -> flags = HDF_CHUNK
Chunked and compressed -> flags = HDF_CHUNK | HDF_COMP
Non-chunked -> flags = HDF_NONE
e.g. 4x4 array - Pseudo-C
{
int32 rcdims[3];
HDF_CHUNK_DEF rchunk_def;
int32 cflags;
...
rchunk_def.chunk_lengths = rcdims;
SDgetchunkinfo(sdsid, &rchunk_def, &cflags);
...
}
RETURNS
SUCCEED/FAIL
******************************************************************************/
extern intn SDgetchunkinfo
(int32 sdsid, /* IN: sds access id */
HDF_CHUNK_DEF *chunk_def, /* IN/OUT: chunk definition */
int32 *flags /* IN/OUT: flags */);
/******************************************************************************
NAME
SDwritechunk -- write the specified chunk to the SDS
DESCRIPTION
This routine writes a whole chunk of data to the chunked SDS
specified by chunk 'origin' for the given SDS and can be used
instead of SDwritedata() when this information is known. This
routine has less overhead and is much faster than using SDwritedata().
Origin specifies the co-ordinates of the chunk according to the chunk
position in the overall chunk array.
'datap' must point to a whole chunk of data.
See SDsetchunk() for a description of the organization of chunks in an SDS.
RETURNS
SUCCEED/FAIL
******************************************************************************/
extern intn SDwritechunk
(int32 sdsid, /* IN: sds access id */
int32 *origin, /* IN: origin of chunk to write */
const VOID *datap /* IN: buffer for data */);
/******************************************************************************
NAME
SDreadchunk -- read the specified chunk to the SDS
DESCRIPTION
This routine reads a whole chunk of data from the chunked SDS
specified by chunk 'origin' for the given SDS and can be used
instead of SDreaddata() when this information is known. This
routine has less overhead and is much faster than using SDreaddata().
Origin specifies the co-ordinates of the chunk according to the chunk
position in the overall chunk array.
'datap' must point to a whole chunk of data.
See SDsetchunk() for a description of the organization of chunks in an SDS.
RETURNS
SUCCEED/FAIL
******************************************************************************/
extern intn SDreadchunk
(int32 sdsid, /* IN: sds access id */
int32 *origin, /* IN: origin of chunk to read */
VOID *datap /* IN/OUT: buffer for data */);
/******************************************************************************
NAME
SDsetchunkcache -- maximum number of chunks to cache
DESCRIPTION
Set the maximum number of chunks to cache.
The cache contains the Least Recently Used(LRU cache replacment policy)
chunks. This routine allows the setting of maximum number of chunks that
can be cached, 'maxcache'.
The performance of the SDxxx interface with chunking is greatly
affected by the users access pattern over the dataset and by
the maximum number of chunks set in the chunk cache. The number chunks
that can be set in the cache is process memory limited. It is a good
idea to always set the maximum number of chunks in the cache as the
default heuristic does not take into account the memory available for
the application.
By default when the SDS is promoted to a chunked element the
maximum number of chunks in the cache 'maxcache' is set to the number of
chunks along the last dimension.
The values set here affects the current object's caching behaviour.
If the chunk cache is full and 'maxcache' is greater then the
current 'maxcache' value, then the chunk cache is reset to the new
'maxcache' value, else the chunk cache remains at the current
'maxcache' value.
If the chunk cache is not full, then the chunk cache is set to the
new 'maxcache' value only if the new 'maxcache' value is greater than the
current number of chunks in the cache.
Use flags argument of 'HDF_CACHEALL' if the whole object is to be cached
in memory, otherwise pass in zero(0). Currently you can only
pass in zero.
See SDsetchunk() for a description of the organization of chunks in an SDS.
RETURNS
Returns the 'maxcache' value for the chunk cache if successful
and FAIL otherwise
******************************************************************************/
extern intn SDsetchunkcache
(int32 sdsid, /* IN: sds access id */
int32 maxcache, /* IN: max number of chunks to cache */
int32 flags /* IN: flags = 0, HDF_CACHEALL */);
/* Define the FORTRAN names */
#ifndef MFSD_FNAMES
# define MFSD_FNAMES
#ifdef DF_CAPFNAMES
# if !(defined INTEL86) && !(defined WIN32)
# define nscstart FNAME(SCSTART)
# define nsfend FNAME(SFEND)
# define nsfendacc FNAME(SFENDACC)
# define nsffinfo FNAME(SFFINFO)
# define nsfselect FNAME(SFSELECT)
# define nscginfo FNAME(SCGINFO)
# define nscgainfo FNAME(SCGAINFO)
# define nscgdinfo FNAME(SCGDINFO)
# define nsfgcal FNAME(SFGCAL)
# define nsfscal FNAME(SFSCAL)
# define nsfgdscale FNAME(SFGDSCALE)
# define nsfsdscale FNAME(SFSDSCALE)
# define nsfgcfill FNAME(SFGCFILL)
# define nsfgfill FNAME(SFGFILL)
# define nsfscfill FNAME(SFSCFILL)
# define nsfsfill FNAME(SFSFILL)
# define nsfsflmd FNAME(SFSFLMD)
# define nsfgrange FNAME(SFGRANGE)
# define nsfsrange FNAME(SFSRANGE)
# define nscn2index FNAME(SCN2INDEX)
# define nsccreate FNAME(SCCREATE)
# define nscsdimstr FNAME(SCSDIMSTR)
# define nscsdimname FNAME(SCSDIMNAME)
# define nscsdatstr FNAME(SCSDATSTR)
# define nsfdimid FNAME(SFDIMID)
# define nsfrcatt FNAME(SFRCATT)
# define nsfrnatt FNAME(SFRNATT)
# define nsfrattr FNAME(SFRATTR)
# define nsfrcdata FNAME(SFRCDATA)
# define nsfrdata FNAME(SFRDATA)
# define nsfwcdata FNAME(SFWCDATA)
# define nsfwdata FNAME(SFWDATA)
# define nscgdatstrs FNAME(SCGDATSTRS)
# define nscgdimstrs FNAME(SCGDIMSTRS)
# define nscscatt FNAME(SCSCATT)
# define nscsnatt FNAME(SCSNATT)
# define nscsattr FNAME(SCSATTR)
# define nscfattr FNAME(SCFATTR)
# define nsfid2ref FNAME(SFID2REF)
# define nsfref2index FNAME(SFREF2INDEX)
# define nsfiscvar FNAME(SFISCVAR)
# define nscsextf FNAME(SCSEXTF)
# define nsfsnbit FNAME(SFSNBIT)
# define nsfsacct FNAME(SFSACCT)
# define nsfsdmvc FNAME(SFSDMVC)
# define nsfisdmvc FNAME(SFISDMVC)
# else /* Fortran PowerStation */
# define nscstart FNAME(SCSTART)
# define nscend FNAME(SCEND)
# define nscendacc FNAME(SCENDACC)
# define nscfinfo FNAME(SCFINFO)
# define nscselct FNAME(SCSELCT)
# define nscdimid FNAME(SCDIMID)
# define nscginfo FNAME(SCGINFO)
# define nscgainfo FNAME(SCGAINFO)
# define nscgdinfo FNAME(SCGDINFO)
# define nscgcal FNAME(SCGCAL)
# define nscscal FNAME(SCSCAL)
# define nscgdscale FNAME(SCGDSCALE)
# define nscsdscale FNAME(SCSDSCALE)
# define nscgcfill FNAME(SCGCFILL)
# define nscgfill FNAME(SCGFILL)
# define nscscfill FNAME(SCSCFILL)
# define nscsfill FNAME(SCSFILL)
# define nscsflmd FNAME(SCSFLMD)
# define nscgrange FNAME(SCGRANGE)
# define nscsrange FNAME(SCSRANGE)
# define nscn2index FNAME(SCN2INDEX)
# define nsccreate FNAME(SCCREATE)
# define nscsdimstr FNAME(SCSDIMSTR)
# define nscsdimname FNAME(SCSDIMNAME)
# define nscsdatstr FNAME(SCSDATSTR)
# define nscrcatt FNAME(SCRCATT)
# define nscrnatt FNAME(SCRNATT)
# define nscrattr FNAME(SCRATTR)
# define nscrcdata FNAME(SCRCDATA)
# define nscrdata FNAME(SCRDATA)
# define nscwcdata FNAME(SCWCDATA)
# define nscwdata FNAME(SCWDATA)
# define nscgdatstrs FNAME(SCGDATSTRS)
# define nscgdimstrs FNAME(SCGDIMSTRS)
# define nscscatt FNAME(SCSCATT)
# define nscsnatt FNAME(SCSNATT)
# define nscsattr FNAME(SCSATTR)
# define nscfattr FNAME(SCFATTR)
# define nscid2ref FNAME(SCID2REF)
# define nscr2idx FNAME(SCR2IDX)
# define nsciscvar FNAME(SCISCVAR)
# define nscsextf FNAME(SCSEXTF)
# define nscsnbit FNAME(SCSNBIT)
# define nscsacct FNAME(SCSACCT)
# define nscsdmvc FNAME(SCSDMVC)
# define nscisdmvc FNAME(SCISDMVC)
# endif /* Fortran PowerStation */
#else /* DF_CAPFNAMES */
# if !(defined INTEL86) && !(defined WIN32)
# define nscstart FNAME(scstart)
# define nsfend FNAME(sfend)
# define nsfendacc FNAME(sfendacc)
# define nsffinfo FNAME(sffinfo)
# define nsfselect FNAME(sfselect)
# define nscginfo FNAME(scginfo)
# define nscgainfo FNAME(scgainfo)
# define nscgdinfo FNAME(scgdinfo)
# define nsfgcal FNAME(sfgcal)
# define nsfscal FNAME(sfscal)
# define nsfgdscale FNAME(sfgdscale)
# define nsfsdscale FNAME(sfsdscale)
# define nsfgcfill FNAME(sfgcfill)
# define nsfgfill FNAME(sfgfill)
# define nsfscfill FNAME(sfscfill)
# define nsfsfill FNAME(sfsfill)
# define nsfsflmd FNAME(sfsflmd)
# define nsfgrange FNAME(sfgrange)
# define nsfsrange FNAME(sfsrange)
# define nscn2index FNAME(scn2index)
# define nsccreate FNAME(sccreate)
# define nscsdimstr FNAME(scsdimstr)
# define nscsdimname FNAME(scsdimname)
# define nscsdatstr FNAME(scsdatstr)
# define nsfdimid FNAME(sfdimid)
# define nsfrcatt FNAME(sfrcatt)
# define nsfrnatt FNAME(sfrnatt)
# define nsfrattr FNAME(sfrattr)
# define nscscatt FNAME(scscatt)
# define nscsnatt FNAME(scsnatt)
# define nscsattr FNAME(scsattr)
# define nscfattr FNAME(scfattr)
# define nsfrcdata FNAME(sfrcdata)
# define nsfrdata FNAME(sfrdata)
# define nsfwcdata FNAME(sfwcdata)
# define nsfwdata FNAME(sfwdata)
# define nscgdatstrs FNAME(scgdatstrs)
# define nscgdimstrs FNAME(scgdimstrs)
# define nsfid2ref FNAME(sfid2ref)
# define nsfref2index FNAME(sfref2index)
# define nsfiscvar FNAME(sfiscvar)
# define nscsextf FNAME(scsextf)
# define nsfsnbit FNAME(sfsnbit)
# define nsfsacct FNAME(sfsacct)
# define nsfsdmvc FNAME(sfsdmvc)
# define nsfisdmvc FNAME(sfisdmvc)
# else /* Powerstation */
# define nscstart FNAME(scstart)
# define nscend FNAME(scend)
# define nscendacc FNAME(scendacc)
# define nscfinfo FNAME(scfinfo)
# define nscselect FNAME(scselect)
# define nscginfo FNAME(scginfo)
# define nscgainfo FNAME(scgainfo)
# define nscgdinfo FNAME(scgdinfo)
# define nscgcal FNAME(scgcal)
# define nscscal FNAME(scscal)
# define nscgdscale FNAME(scgdscale)
# define nscsdscale FNAME(scsdscale)
# define nscgcfill FNAME(scgcfill)
# define nscgfill FNAME(scgfill)
# define nscscfill FNAME(scscfill)
# define nscsfill FNAME(scsfill)
# define nscsflmd FNAME(scsflmd)
# define nscgrange FNAME(scgrange)
# define nscsrange FNAME(scsrange)
# define nscn2index FNAME(scn2index)
# define nsccreate FNAME(sccreate)
# define nscsdimstr FNAME(scsdimstr)
# define nscsdimname FNAME(scsdimname)
# define nscsdatstr FNAME(scsdatstr)
# define nscdimid FNAME(scdimid)
# define nscrcatt FNAME(scrcatt)
# define nscrnatt FNAME(scrnatt)
# define nscrattr FNAME(scrattr)
# define nscscatt FNAME(scscatt)
# define nscsnatt FNAME(scsnatt)
# define nscsattr FNAME(scsattr)
# define nscfattr FNAME(scfattr)
# define nscrcdata FNAME(scrcdata)
# define nscrdata FNAME(scrdata)
# define nscwcdata FNAME(scwcdata)
# define nscwdata FNAME(scwdata)
# define nscgdatstrs FNAME(scgdatstrs)
# define nscgdimstrs FNAME(scgdimstrs)
# define nscid2ref FNAME(scid2ref)
# define nscr2idx FNAME(scr2idx)
# define nsciscvar FNAME(sciscvar)
# define nscsnbit FNAME(scsnbit)
# define nscsextf FNAME(scsextf)
# define nscsacct FNAME(scsacct)
# define nscsdmvc FNAME(scsdmvc)
# define nscisdmvc FNAME(scisdmvc)
# endif /* powerstation */
#endif /* capital */
#endif /* MFSD_FNAMES */
#ifdef __cplusplus
}
#endif
#endif /* _MFSD_H_ */
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