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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF. The full HDF copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at *
* http://hdfgroup.org/products/hdf4/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#include <assert.h>
#include "hdiff.h"
#include "hdiff_list.h"
#include "hdiff_mattbl.h"
#define H4TOOLS_BUFSIZE (1024 * 1024)
#define H4TOOLS_MALLOCSIZE (1024 * 1024)
static
uint32 diff_sds_attrs(int32 sds1_id,
int32 nattrs1,
int32 sds2_id,
int32 nattrs2,
char* sds1_name,
diff_opt_t * opt);
/*-------------------------------------------------------------------------
* Function: diff_sds
*
* Purpose: diff for SDS
*
* Return: Number of differences found
*
* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
*
* Date: August 25, 2003
*
*-------------------------------------------------------------------------
*/
uint32 diff_sds(int32 sd1_id,
int32 sd2_id,
int32 ref1,
int32 ref2,
diff_opt_t * opt)
{
int32 sds1_id=-1, /* data set identifier */
sds1_index, /* index number of the data set */
dtype1, /* SDS data type */
dimsizes1[H4_MAX_VAR_DIMS],/* dimensional size of SDS */
nattrs1, /* number of SDS attributes */
rank1, /* rank of SDS */
sds2_id=-1, /* data set identifier */
sds2_index, /* index number of the data set */
dtype2, /* SDS data type */
dimsizes2[H4_MAX_VAR_DIMS],/* dimensional size of SDS */
nattrs2, /* number of SDS attributes */
rank2, /* rank of SDS */
start[H4_MAX_VAR_DIMS], /* read start */
edges[H4_MAX_VAR_DIMS], /* read edges */
numtype, /* number type */
eltsz; /* element size */
uint32 nelms; /* number of elements */
size_t need; /* read size needed */
char sds1_name[H4_MAX_NC_NAME];
char sds2_name[H4_MAX_NC_NAME];
int dim_diff=0; /* dimensions are different */
intn empty1_sds;
intn empty2_sds;
VOIDP buf1=NULL;
VOIDP buf2=NULL;
uint32 max_err_cnt;
int i;
VOIDP fill1=NULL;
VOIDP fill2=NULL;
uint32 nfound=0;
void *sm_buf1=NULL;
void *sm_buf2=NULL;
/*-------------------------------------------------------------------------
* object 1
*-------------------------------------------------------------------------
*/
sds1_index = SDreftoindex(sd1_id,ref1);
sds1_id = SDselect(sd1_id,sds1_index);
/*obtain name,rank,dimsizes,datatype and num of attributes of sds */
if (SDgetinfo(sds1_id,sds1_name,&rank1,dimsizes1,&dtype1,&nattrs1)==FAIL) {
printf( "Failed to get info for SDS ref <%ld>\n",ref1);
goto out;
}
/*-------------------------------------------------------------------------
* object 2
*-------------------------------------------------------------------------
*/
sds2_index = SDreftoindex(sd2_id,ref2);
sds2_id = SDselect(sd2_id,sds2_index);
/*obtain name,rank,dimsizes,datatype and num of attributes of sds */
if (SDgetinfo(sds2_id,sds2_name,&rank2,dimsizes2,&dtype2,&nattrs2)==FAIL) {
printf( "Failed to get info for SDS ref <%ld>\n",ref2);
goto out;
}
/* flag to compare SDSs */
if (opt->sd == 1)
{
/*-------------------------------------------------------------------------
* check for input SDs
*-------------------------------------------------------------------------
*/
if (opt->nlvars > 0) /* if specified vdata is selected */
{
int imatch = 0, j;
for (j = 0; j < opt->nlvars; j++)
{
if (strcmp(sds1_name, opt->lvars[j]) == 0)
{
imatch = 1;
break;
}
}
if (imatch == 0)
{
goto do_nothing;
}
}
/*-------------------------------------------------------------------------
* check for different type
*-------------------------------------------------------------------------
*/
if (dtype1 != dtype2)
{
printf("Comparison not supported\n");
printf("<%s> has datatype %ld, <%s> has datatype %ld ",sds1_name,dtype1,sds2_name,dtype2);
goto do_nothing;
}
/*-------------------------------------------------------------------------
* check for the same rank
*-------------------------------------------------------------------------
*/
if ( rank1 != rank2 )
{
printf("Comparison not supported\n");
printf("<%s> has rank %ld, dimensions ", sds1_name, rank1);
print_dims(rank1,dimsizes1);
printf("\n" );
printf("<%s> has rank %ld, dimensions ", sds2_name, rank2);
print_dims(rank2,dimsizes2);
goto do_nothing;
}
/*-------------------------------------------------------------------------
* check for different dimensions
*-------------------------------------------------------------------------
*/
for ( i=0; i<rank1; i++)
{
if ( dimsizes1[i] != dimsizes2[i] )
dim_diff=1;
}
/*-------------------------------------------------------------------------
* dimensions
*-------------------------------------------------------------------------
*/
if (dim_diff==1)
{
printf("Comparison not supported\n");
printf("<%s> has rank %ld, dimensions ", sds1_name, rank1);
print_dims(rank1,dimsizes1);
printf("\n" );
printf("<%s> has rank %ld, dimensions ", sds2_name, rank2);
print_dims(rank2,dimsizes2);
goto do_nothing;
}
/*-------------------------------------------------------------------------
* check if the input SDSs are empty. if so , return
*-------------------------------------------------------------------------
*/
if (SDcheckempty( sds1_id, &empty1_sds ) == FAIL) {
printf( "Failed to check empty SDS <%s>\n", sds1_name);
goto out;
}
if (empty1_sds==1)
{
if (opt->verbose)
printf( "Empty SDS <%s>\n", sds1_name);
goto do_nothing;
}
if (SDcheckempty( sds2_id, &empty2_sds ) == FAIL) {
printf( "Failed to check empty SDS <%s>\n", sds2_name);
goto out;
}
if (empty2_sds==1 )
{
if (opt->verbose)
printf( "Empty SDS <%s>\n", sds2_name);
goto do_nothing;
}
/*-------------------------------------------------------------------------
* get size
*-------------------------------------------------------------------------
*/
/* compute the number of the bytes for each value. */
numtype = dtype1 & DFNT_MASK;
eltsz = DFKNTsize(numtype | DFNT_NATIVE);
/*-------------------------------------------------------------------------
* get fill values
*-------------------------------------------------------------------------
*/
fill1 = (VOIDP) HDmalloc(eltsz);
fill2 = (VOIDP) HDmalloc(eltsz);
if (fill1!=NULL && SDgetfillvalue(sds1_id,fill1)<0)
{
HDfree(fill1);
fill1 = NULL;
}
if (fill2!=NULL && SDgetfillvalue(sds2_id,fill2)<0)
{
HDfree(fill2);
fill2 = NULL;
}
/*-------------------------------------------------------------------------
* read
*-------------------------------------------------------------------------
*/
nelms = 1;
for (i = 0; i < rank1; i++)
{
nelms *= dimsizes1[i];
}
need = (size_t)(nelms * eltsz); /* bytes needed */
if ( need < H4TOOLS_MALLOCSIZE)
{
buf1 = (VOIDP)HDmalloc(need);
buf2 = (VOIDP)HDmalloc(need);
}
/*-------------------------------------------------------------------------
* read all
*-------------------------------------------------------------------------
*/
if ( buf1!=NULL && buf2!=NULL)
{
/* select all */
for (i = 0; i < rank1; i++)
{
edges[i] = dimsizes1[i];
start[i] = 0;
}
/* read */
if (SDreaddata (sds1_id, start, NULL, edges, buf1) == FAIL)
{
printf( "Could not read SDS <%s>\n", sds1_name);
goto out;
}
/* read */
if (SDreaddata (sds2_id, start, NULL, edges, buf2) == FAIL)
{
printf( "Could not read SDS <%s>\n", sds2_name);
goto out;
}
/*-------------------------------------------------------------------------
* comparing
*-------------------------------------------------------------------------
*/
if (opt->verbose)
printf("Comparing <%s>\n",sds1_name);
/* if the given max_err_cnt is set (i.e. not its default MAX_DIFF),
use it, otherwise, use the total number of elements in the dataset */
max_err_cnt = (opt->max_err_cnt != MAX_DIFF) ? opt->max_err_cnt : nelms;
nfound=array_diff(buf1,
buf2,
nelms,
sds1_name,
sds2_name,
rank1,
dimsizes1,
dtype1,
opt->err_limit,
opt->err_rel,
max_err_cnt,
opt->statistics,
fill1,
fill2);
}
else /* possibly not enough memory, read/compare by hyperslabs */
{
size_t p_type_nbytes = eltsz; /*size of type */
uint32 p_nelmts = nelms; /*total selected elmts */
uint32 elmtno; /*counter */
int carry; /*counter carry value */
/* stripmine info */
int32 sm_size[H4_MAX_VAR_DIMS]; /*stripmine size */
int32 sm_nbytes; /*bytes per stripmine */
int32 sm_nelmts; /*elements per stripmine*/
/* hyperslab info */
int32 hs_offset[H4_MAX_VAR_DIMS]; /*starting offset */
int32 hs_size[H4_MAX_VAR_DIMS]; /*size this pass */
int32 hs_nelmts; /*elements in request */
/*
* determine the strip mine size and allocate a buffer. The strip mine is
* a hyperslab whose size is manageable.
*/
sm_nbytes = p_type_nbytes;
for (i = rank1; i > 0; --i)
{
sm_size[i - 1] = MIN(dimsizes1[i - 1], H4TOOLS_BUFSIZE / sm_nbytes);
sm_nbytes *= sm_size[i - 1];
assert(sm_nbytes > 0);
}
sm_buf1 = HDmalloc((size_t)sm_nbytes);
sm_buf2 = HDmalloc((size_t)sm_nbytes);
sm_nelmts = sm_nbytes / p_type_nbytes;
/* the stripmine loop */
memset(hs_offset, 0, sizeof hs_offset);
for (elmtno = 0; elmtno < p_nelmts; elmtno += hs_nelmts)
{
/* calculate the hyperslab size */
if (rank1 > 0)
{
for (i = 0, hs_nelmts = 1; i < rank1; i++)
{
hs_size[i] = MIN(dimsizes1[i] - hs_offset[i], sm_size[i]);
hs_nelmts *= hs_size[i];
}
}
else
{
hs_nelmts = 1;
} /* rank */
/* read */
if (SDreaddata (sds1_id, hs_offset, NULL, hs_size, sm_buf1) == FAIL)
{
printf( "Could not read SDS <%s>\n", sds1_name);
goto out;
}
/* read */
if (SDreaddata (sds2_id, hs_offset, NULL, hs_size, sm_buf2) == FAIL)
{
printf( "Could not read SDS <%s>\n", sds2_name);
goto out;
}
/*-------------------------------------------------------------------------
* comparing
*-------------------------------------------------------------------------
*/
if (opt->verbose)
printf("Comparing <%s>\n",sds1_name);
/* if the given max_err_cnt is set (i.e. not its default MAX_DIFF),
use it, otherwise, use the total number of elements in the dataset */
max_err_cnt = (opt->max_err_cnt != MAX_DIFF) ? opt->max_err_cnt : nelms;
/* get array differences. in the case of hyperslab read, increment the number of differences
found in each hyperslab and pass the position at the beggining for printing
*/
nfound=array_diff(sm_buf1,
sm_buf2,
hs_nelmts,
sds1_name,
sds2_name,
rank1,
dimsizes1,
dtype1,
opt->err_limit,
opt->err_rel,
max_err_cnt,
opt->statistics,
fill1,
fill2);
/* calculate the next hyperslab offset */
for (i = rank1, carry = 1; i > 0 && carry; --i)
{
hs_offset[i - 1] += hs_size[i - 1];
if (hs_offset[i - 1] == dimsizes1[i - 1])
hs_offset[i - 1] = 0;
else
carry = 0;
} /* i */
} /* elmtno */
/* free */
if (sm_buf1!=NULL)
{
free(sm_buf1);
sm_buf1=NULL;
}
if (sm_buf2!=NULL)
{
free(sm_buf2);
sm_buf2=NULL;
}
} /* hyperslab read */
} /* flag to compare SDSs */
/* flag to compare SDSs local attributes */
if (opt->sa == 1)
{
nfound += diff_sds_attrs(sds1_id,nattrs1,sds2_id,nattrs2,sds1_name,opt);
}
/*-------------------------------------------------------------------------
* close
*-------------------------------------------------------------------------
*/
do_nothing:
SDendaccess(sds1_id);
SDendaccess(sds2_id);
if (buf1) HDfree(buf1);
if (buf2) HDfree(buf2);
if (fill1) HDfree(fill1);
if (fill2) HDfree(fill2);
return nfound;
out:
opt->err_stat = 1;
if (sds1_id!=-1)
SDendaccess(sds1_id);
if (sds2_id!=-1)
SDendaccess(sds2_id);
if (buf1) HDfree(buf1);
if (buf2) HDfree(buf2);
if (fill1) HDfree(fill1);
if (fill2) HDfree(fill2);
return 0;
}
/*-------------------------------------------------------------------------
* Function: diff_sds_attrs
*
* Purpose: compare SDS attributes
*
* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
*
* Date: September 2, 2003
*
*-------------------------------------------------------------------------
*/
static
uint32 diff_sds_attrs(int32 sds1_id,
int32 nattrs1,
int32 sds2_id,
int32 nattrs2,
char* sds1_name,
diff_opt_t * opt)
{
int32 dtype1, /* SDS data type */
nelms1, /* number of elements */
dtype2, /* SDS data type */
nelms2; /* number of elements */
char attr1_name[H4_MAX_NC_NAME];
char attr2_name[H4_MAX_NC_NAME];
VOIDP attr1_buf=NULL;
VOIDP attr2_buf=NULL;
int i, cmp;
uint32 nfound=0;
if ( nattrs1!=nattrs2) {
printf( "Different number of atrributes\n");
return 0;
}
/* loop through attributes */
for (i = 0; i < nattrs1; i++)
{
if (SDattrinfo (sds1_id, i, attr1_name, &dtype1, &nelms1) == FAIL) {
printf( "Cannot get info for attribute number %d\n", i);
goto out;
}
if (SDattrinfo (sds2_id, i, attr2_name, &dtype2, &nelms2) == FAIL) {
printf( "Cannot get info for attribute number %d\n", i);
goto out;
}
if (dtype1 != dtype2 || nelms1 != nelms2 || (strcmp(attr1_name,attr2_name)!=0)) {
printf( "Different information for attribute <%d>\n", i);
continue;
}
attr1_buf = (void *) malloc((unsigned)nelms1*DFKNTsize(dtype1 | DFNT_NATIVE));
if (!attr1_buf) {
printf("Out of memory!");
goto out;;
}
attr2_buf = (void *) malloc((unsigned)nelms2*DFKNTsize(dtype2 | DFNT_NATIVE));
if (!attr2_buf) {
printf("Out of memory!");
goto out;
}
if (SDreadattr(sds1_id, i, attr1_buf)==FAIL ) {
printf( "Could not read attribute number %d\n", i);
goto out;
}
if (SDreadattr(sds2_id, i, attr2_buf)==FAIL ) {
printf( "Could not read attribute number %d\n", i);
goto out;
}
cmp = HDmemcmp(attr1_buf,attr2_buf,nelms1*DFKNTsize(dtype1 | DFNT_NATIVE));
if (cmp!=0)
{
printf("\n---------------------------\n");
printf ("%s:%s = \n",sds1_name,attr1_name);
printf("<<<<\n");
pr_att_vals((nc_type)dtype1, nelms1, attr1_buf);
printf (" ;\n");
printf(">>>>\n");
pr_att_vals((nc_type)dtype2, nelms2, attr2_buf);
printf (" ;\n");
nfound++;
}
if (attr1_buf) free(attr1_buf);
if (attr2_buf) free(attr2_buf);
}
return nfound;
out:
if (attr1_buf) free(attr1_buf);
if (attr2_buf) free(attr2_buf);
opt->err_stat = 1;
return 0;
}
/*-------------------------------------------------------------------------
* Function: print_dims
*
* Purpose: print dimensions
*
* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
*
* Date: May 9, 2003
*
* Comments:
*
*-------------------------------------------------------------------------
*/
void print_dims( int r, int32 *d )
{
int i;
printf("[ " );
for ( i=0; i<r; i++ )
printf("%d ",(int)d[i] );
printf("] " );
}
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