File: hrepack_sds.c

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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
 * Copyright by The HDF Group.                                               *
 * Copyright by the Board of Trustees of the University of Illinois.         *
 * All rights reserved.                                                      *
 *                                                                           *
 * This file is part of HDF.  The full HDF copyright notice, including       *
 * terms governing use, modification, and redistribution, is contained in    *
 * the COPYING file, which can be found at the root of the source code       *
 * distribution tree, or in https://support.hdfgroup.org/ftp/HDF/releases/.  *
 * If you do not have access to either file, you may request a copy from     *
 * help@hdfgroup.org.                                                        *
 * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */

#include <assert.h>
#include <limits.h>
#include <stdlib.h>
#include <string.h>

#include "hdf.h"
#include "mfhdf.h"
#include "hrepack.h"
#include "hrepack_sds.h"
#include "hrepack_an.h"
#include "hrepack_utils.h"
#include "hrepack_parse.h"
#include "hrepack_opttable.h"
#include "hrepack_dim.h"

#define H4TOOLS_BUFSIZE    (1024 * 1024)
#define H4TOOLS_MALLOCSIZE (1024 * 1024)

void print_info(int chunk_flags, HDF_CHUNK_DEF *chunk_def, int comp_type, char *path, char *ratio);

int get_print_info(int chunk_flags, HDF_CHUNK_DEF *chunk_def, int comp_type, char *path, char *sds_name,
                   int32 sd_id);

/*-------------------------------------------------------------------------
 * Function: copy_sds
 *
 * Purpose: copy an SDS from input file to output file and compress it
 *  using options
 *
 * Return: SUCCEED, FAIL
 *
 * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
 *
 * Date: July 10, 2003
 *
 *-------------------------------------------------------------------------
 */

int
copy_sds(int32 sd_in, int32 sd_out, int32 tag, /* tag of input SDS */
         int32      ref,                       /* ref of input SDS */
         int32      vgroup_id_out_par,         /* output parent group ID */
         char      *path_name,                 /* absolute path for input group name */
         options_t *options, list_table_t *list_tbl, dim_table_t *td1, dim_table_t *td2, int32 infile_id,
         int32 outfile_id)
{
    int32 sds_id,                  /* data set identifier */
        sds_out = FAIL,            /* data set identifier */
        sds_index,                 /* index number of the data set */
        dtype,                     /* SDS data type */
        dimsizes[H4_MAX_VAR_DIMS], /* dimensions of SDS */
        start[H4_MAX_VAR_DIMS],    /* read start */
        edges[H4_MAX_VAR_DIMS],    /* read edges */
        nattrs,                    /* number of SDS attributes */
        rank,                      /* rank of SDS */
        sds_ref,                   /* reference number of the output data set */
        numtype,                   /* number type */
        eltsz,                     /* element size */
        nelms,                     /* number of elements */
        dim_id,                    /* dimension ID */
        dim_out;                   /* dimension ID */
    char          sds_name[H4_MAX_NC_NAME];
    char          dim_name[H4_MAX_NC_NAME];
    char         *path    = NULL;
    void         *buf     = NULL;
    void         *dim_buf = NULL;
    int           i, j;
    int           info;           /* temporary int compression information */
    comp_coder_t  comp_type;      /* compression type requested  */
    comp_coder_t  comp_type_in;   /* compression type original  */
    comp_info     c_info;         /* compression information requested  */
    comp_info     c_info_in;      /* compression information original  */
    HDF_CHUNK_DEF chunk_def;      /* chunk definition */
    HDF_CHUNK_DEF chunk_def_in;   /* chunk definition original */
    int32         chunk_flags;    /* chunk flags */
    int32         chunk_flags_in; /* chunk flags original*/
    int           szip_mode;      /* szip mode, EC, NN */
    intn          empty_sds;
    int           have_info = 0;
    size_t        need; /* read size needed */
    void         *sm_buf    = NULL;
    int           is_record = 0;

    sds_index = SDreftoindex(sd_in, ref);
    sds_id    = SDselect(sd_in, sds_index);

    /*obtain name,rank,dimsizes,datatype and num of attributes of sds */
    if (SDgetinfo(sds_id, sds_name, &rank, dimsizes, &dtype, &nattrs) == FAIL) {
        printf("Could not get information for SDS\n");
        SDendaccess(sds_id);
        return FAIL;
    }

    /* check if the given SDS is a dimension scale, return 0 for no table add */
    if (SDiscoordvar(sds_id)) {
        /* add SDS coordinate variable to dimension table 1 */
        dim_table_add(td1, ref, sds_name);
        SDendaccess(sds_id);
        return SUCCEED;
    }

    /* initialize path */
    path = get_path(path_name, sds_name);

    /* add object to table */
    list_table_add(list_tbl, tag, ref, path);

    /*-------------------------------------------------------------------------
     * check if the input SDS is empty. if so , avoid some operations (mainly read, write)
     *-------------------------------------------------------------------------
     */
    if (SDcheckempty(sds_id, &empty_sds) == FAIL) {
        printf("Failed to check empty SDS <%s>\n", path);
        goto out;
    }

    /*-------------------------------------------------------------------------
     * element size and number of elements
     *-------------------------------------------------------------------------
     */

    /* compute the number of the bytes for each value */
    numtype = dtype & DFNT_MASK;
    eltsz   = DFKNTsize(numtype | DFNT_NATIVE);

    /* get number of elements */
    nelms = 1;
    for (j = 0; j < rank; j++) {
        nelms *= dimsizes[j];
    }

    /*-------------------------------------------------------------------------
     * get the original compression/chunk information from the object
     *-------------------------------------------------------------------------
     */

    /* reset variables before retrieving information */
    comp_type = comp_type_in = COMP_CODE_NONE;
    chunk_flags = chunk_flags_in = HDF_NONE;

    if (empty_sds == 0) {
        memset(&c_info_in, 0, sizeof(comp_info));
        if (SDgetcompinfo(sds_id, &comp_type_in, &c_info_in) == FAIL) {
            printf("Could not get compression information for SDS <%s>\n", path);
            goto out;
        }

        /* get chunk lengths */
        if (SDgetchunkinfo(sds_id, &chunk_def_in, &chunk_flags_in) == FAIL) {
            printf("Could not get chunking information for SDS <%s>\n", path);
            goto out;
        }

        /* retrieve the compress information if so */
        if ((HDF_CHUNK | HDF_COMP) == chunk_flags_in) {
            chunk_def_in.comp.comp_type = comp_type_in;
            switch (comp_type_in) {
                case COMP_CODE_RLE:
                    chunk_def_in.comp.comp_type = COMP_CODE_RLE;
                    break;
                case COMP_CODE_SKPHUFF:
                    chunk_def_in.comp.comp_type     = COMP_CODE_SKPHUFF;
                    chunk_def_in.comp.cinfo.skphuff = c_info_in.skphuff;
                    break;
                case COMP_CODE_DEFLATE:
                    chunk_def_in.comp.comp_type     = COMP_CODE_DEFLATE;
                    chunk_def_in.comp.cinfo.deflate = c_info_in.deflate;
                    break;
                case COMP_CODE_SZIP:
#ifdef H4_HAVE_LIBSZ
                    chunk_def_in.comp.comp_type  = COMP_CODE_SZIP;
                    chunk_def_in.comp.cinfo.szip = c_info_in.szip;
#else
                    printf("Error: SZIP compression is not available <%s>\n", path);
                    goto out;
#endif
                    break;
                default:
                    printf("Error: Unrecognized compression code in %d <%s>\n", comp_type_in, path);
                    goto out;
            };
        }

        /*-------------------------------------------------------------------------
         * set the default values to the ones read from the object
         *-------------------------------------------------------------------------
         */

        /*-------------------------------------------------------------------------
         * compression
         *-------------------------------------------------------------------------
         */

        comp_type = comp_type_in;

        switch (comp_type_in) {
            case COMP_CODE_NBIT:
                printf("Nbit compression not supported in this version <%s>\n", path);
                break;
            case COMP_CODE_NONE:
                break;
            case COMP_CODE_RLE:
                break;
            case COMP_CODE_SZIP:
#ifdef H4_HAVE_LIBSZ
                info = c_info_in.szip.pixels_per_block;
                if (c_info_in.szip.options_mask & SZ_EC_OPTION_MASK) {
                    szip_mode = EC_MODE;
                }
                else if (c_info_in.szip.options_mask & SZ_NN_OPTION_MASK) {
                    szip_mode = NN_MODE;
                }
#else
                printf("SZIP compression not supported in this version <%s>\n", path);
#endif
                break;
            case COMP_CODE_SKPHUFF:
                info = c_info_in.skphuff.skp_size;
                break;
            case COMP_CODE_DEFLATE:
                info = c_info_in.deflate.level;
                break;
            default:
                printf("Error: Unrecognized compression code in %d <%s>\n", comp_type, path);
                goto out;
                break;
        };

        /*-------------------------------------------------------------------------
         * chunking
         *-------------------------------------------------------------------------
         */

        chunk_flags = chunk_flags_in;

        if ((HDF_CHUNK) == chunk_flags) {
            for (i = 0; i < rank; i++)
                chunk_def.chunk_lengths[i] = chunk_def_in.chunk_lengths[i];
        }
        else if ((HDF_CHUNK | HDF_COMP) == chunk_flags) {
            for (i = 0; i < rank; i++) {
                chunk_def.chunk_lengths[i]      = chunk_def_in.chunk_lengths[i];
                chunk_def.comp.chunk_lengths[i] = chunk_def_in.chunk_lengths[i];
            }
            chunk_def.comp.comp_type = comp_type_in;
            switch (comp_type_in) {
                case COMP_CODE_RLE:
                    chunk_def.comp.comp_type = COMP_CODE_RLE;
                    break;
                case COMP_CODE_SKPHUFF:
                    chunk_def.comp.comp_type     = COMP_CODE_SKPHUFF;
                    chunk_def.comp.cinfo.skphuff = c_info_in.skphuff;
                    break;
                case COMP_CODE_DEFLATE:
                    chunk_def.comp.comp_type     = COMP_CODE_DEFLATE;
                    chunk_def.comp.cinfo.deflate = c_info_in.deflate;
                    break;
                case COMP_CODE_SZIP:
#ifdef H4_HAVE_LIBSZ
                    chunk_def.comp.comp_type  = COMP_CODE_SZIP;
                    chunk_def.comp.cinfo.szip = c_info_in.szip;
#else
                    printf("Error: SZIP compression not available in %d <%s>\n", comp_type_in, path);
#endif
                    break;
                default:
                    printf("Error: Unrecognized compression code in %d <%s>\n", comp_type_in, path);
                    goto out;
            };
        }

        /*-------------------------------------------------------------------------
         * get the compression/chunk information of this object from the table
         * translate to usable information
         * this is done ONLY for the second trip inspection
         *-------------------------------------------------------------------------
         */

        /* check inspection mode */
        if (options->trip > 0) {
            have_info = options_get_info(options,      /* global options */
                                         &chunk_flags, /* chunk flags OUT */
                                         &chunk_def,   /* chunk definition OUT */
                                         &info,        /* compression information OUT */
                                         &szip_mode,   /* compression information OUT */
                                         &comp_type,   /* compression type OUT  */
                                         rank,         /* rank of object IN */
                                         path,         /* path of object IN */
                                         1,            /* number of GR image planes (for SZIP), IN */
                                         dimsizes,     /* dimensions (for SZIP), IN */
                                         dtype         /* numeric type ( for SZIP), IN */
            );
            if (have_info == FAIL)
                goto out;
        } /* check inspection mode */

        /*-------------------------------------------------------------------------
         * check for maximum number of chunks threshold
         *-------------------------------------------------------------------------
         */
        if (options->trip > 0) {
            int count    = 1, nchunks;
            int maxchunk = INT_MAX;
            if ((chunk_flags == HDF_CHUNK) || (chunk_flags == (HDF_CHUNK | HDF_COMP))) {
                for (j = 0; j < rank; j++) {
                    count *= chunk_def.chunk_lengths[j];
                }
                nchunks = nelms / count;
                if (nchunks > maxchunk) {
                    printf("Warning: number of chunks is %d (greater than %d). Not chunking <%s>\n", nchunks,
                           maxchunk, path);
                    chunk_flags = HDF_NONE;
                }
            }
        }

        /*-------------------------------------------------------------------------
         * check for objects too small
         *-------------------------------------------------------------------------
         */
        if (have_info == 1 && options->trip > 0 && nelms * eltsz < options->threshold) {
            /* reset to the original values . we don't want to uncompress if it was */
            chunk_flags = chunk_flags_in;
            comp_type   = comp_type_in;
            if (options->verbose) {
                printf("Warning: object size smaller than %d bytes. Not compressing <%s>\n",
                       options->threshold, path);
            }
        }

    } /* empty_sds */

    /*-------------------------------------------------------------------------
     * check if the requested compression is valid
     * SDSs do not support JPEG
     *-------------------------------------------------------------------------
     */

    /* check inspection mode */
    if (options->trip > 0 && empty_sds == 0) {
        switch (comp_type) {
            case COMP_CODE_NONE:
            case COMP_CODE_RLE:
            case COMP_CODE_SKPHUFF:
            case COMP_CODE_DEFLATE:
            case COMP_CODE_SZIP:
            case COMP_CODE_NBIT:
                break;
            case COMP_CODE_JPEG:
                printf("Error: JPEG compression is not available for <%s>\n", path);
                goto out;
                break;
            default:
                printf("Error: Unrecognized compression code %d in <%s>\n", comp_type_in, path);
                goto out;
        }
    } /* check inspection mode */

    /*-------------------------------------------------------------------------
     * if we are in first trip inspection mode, exit, after printing the information
     *-------------------------------------------------------------------------
     */

    /* check inspection mode */
    if (options->trip == 0) {
        /* close sds before get info */
        SDendaccess(sds_id);

        if (options->verbose) {

            if (get_print_info(chunk_flags_in, &chunk_def, comp_type, path, sds_name, sd_in) == FAIL)
                goto out;
        }

        free(path);
        return SUCCEED;
    }

    /*-------------------------------------------------------------------------
     * create new SDS
     * check for unlimited dimension
     * SDisrecord determines whether the data set identified by the parameter sds_id
     * is appendable, which means that the slowest-changing dimension of the SDS array
     * is declared unlimited when the data set is created.
     *-------------------------------------------------------------------------
     */
    /* do not use unlimited if compression is needed since combination of unlimited
       and compression is not allowed. */
    if (SDisrecord(sds_id) && comp_type <= COMP_CODE_NONE) {
        int32 dimsizes_cre[H4_MAX_VAR_DIMS];

        is_record = 1;

        for (j = 0; j < rank; j++) {
            dimsizes_cre[j] = dimsizes[j];
        }
        dimsizes_cre[0] = SD_UNLIMITED;

        if ((sds_out = SDcreate(sd_out, sds_name, dtype, rank, dimsizes_cre)) == FAIL) {
            printf("Failed to create new SDS <%s>\n", path);
            goto out;
        }
    }
    else {

        if ((sds_out = SDcreate(sd_out, sds_name, dtype, rank, dimsizes)) == FAIL) {
            printf("Failed to create new SDS <%s>\n", path);
            goto out;
        }
    }

    /*-------------------------------------------------------------------------
     * set chunk
     *
     * Chunked                  -> flags = HDF_CHUNK
     * Chunked and compressed   -> flags = HDF_CHUNK | HDF_COMP
     * Non-chunked              -> flags = HDF_NONE
     *-------------------------------------------------------------------------
     */

    if (empty_sds == 0) {

        /* set chunk */
        if ((chunk_flags == HDF_CHUNK) || (chunk_flags == (HDF_CHUNK | HDF_COMP))) {

            /* unlimited dimensions don't work with chunking */
            if (!is_record) {

                if (SDsetchunk(sds_out, chunk_def, chunk_flags) == FAIL) {
                    printf("Error: Failed to set chunk dimensions for <%s>\n", path);
                    goto out;
                }
            }
        }

        /*-------------------------------------------------------------------------
         * set compression
         *
         * COMP_CODE_RLE       -> simple RLE encoding
         * COMP_CODE_SKPHUFF   -> Skipping huffman encoding
         * COMP_CODE_DEFLATE   -> gzip 'deflate' encoding
         *-------------------------------------------------------------------------
         */

        /* use compress without chunk-in */
        else if (chunk_flags == HDF_NONE && comp_type > COMP_CODE_NONE) {
            if (nelms * eltsz < options->threshold) {
                /* reset to the original values . we don't want to uncompress if it was */
                comp_type = COMP_CODE_NONE;
                if (options->verbose) {
                    printf("Warning: object size smaller than %d bytes. Not compressing <%s>\n",
                           options->threshold, path);
                }
            }
            else {
                /* setup compression factors */
                switch (comp_type) {
                    case COMP_CODE_SZIP:
                        if (set_szip(info, szip_mode, &c_info) == FAIL) {
                            comp_type = COMP_CODE_NONE;
                        }
                        break;
                    case COMP_CODE_RLE:
                        break;
                    case COMP_CODE_SKPHUFF:
                        c_info.skphuff.skp_size = info;
                        break;
                    case COMP_CODE_DEFLATE:
                        c_info.deflate.level = info;
                        break;
                    case COMP_CODE_NBIT:
                        comp_type = COMP_CODE_NONE; /* not supported in this version */
                        break;
                    default:
                        printf("Error: Unrecognized compression code %d\n", comp_type);
                        goto out;
                }

                /*
                  HDF4 2.6 does not allow the combination of unlimited dimensions
                  and compression. See bug HDFFR-1280
                  The fix: for the case of the combination of unlimited dimensions
                  and compression, compressed will be applied but dimension is changed
                  to limited size in hrepack.
                */
                if (SDsetcompress(sds_out, comp_type, &c_info) == FAIL) {
                    printf("Error: Failed to set compression for <%s>\n", path);
                    goto out;
                }
            }
        }

        need = (size_t)(nelms * eltsz); /* bytes needed */

        if (need < H4TOOLS_MALLOCSIZE ||
            /* for compressed datasets do one operation I/O, but allow hyperslab for chunked */
            (chunk_flags == HDF_NONE && comp_type > COMP_CODE_NONE)) {
            buf = (void *)malloc(need);
        }

        /*-------------------------------------------------------------------------
         * read all
         *-------------------------------------------------------------------------
         */

        if (buf != NULL) {

            /* set edges of SDS, select all */
            for (i = 0; i < rank; i++) {
                edges[i] = dimsizes[i];
                start[i] = 0;
            }

            /* read  */
            if (SDreaddata(sds_id, start, NULL, edges, buf) == FAIL) {
                printf("Could not read SDS <%s>\n", path);
                goto out;
            }

            /* write */
            if (SDwritedata(sds_out, start, NULL, edges, buf) == FAIL) {
                printf("Failed to write to new SDS <%s>\n", path);
                goto out;
            }
        }

        else /* possibly not enough memory, read/write by hyperslabs */

        {
            size_t p_type_nbytes = eltsz; /*size of type */
            uint32 p_nelmts      = nelms; /*total selected elmts */
            uint32 elmtno;                /*counter  */
            int    carry;                 /*counter carry value */

            /* stripmine info */
            int32 sm_size[H4_MAX_VAR_DIMS]; /*stripmine size */
            int32 sm_nbytes;                /*bytes per stripmine */

            /* hyperslab info */
            int32 hs_offset[H4_MAX_VAR_DIMS]; /*starting offset */
            int32 hs_size[H4_MAX_VAR_DIMS];   /*size this pass */
            int32 hs_nelmts;                  /*elements in request */

            /*
             * determine the strip mine size and allocate a buffer. The strip mine is
             * a hyperslab whose size is manageable.
             */
            sm_nbytes = p_type_nbytes;

            for (i = rank; i > 0; --i) {
                sm_size[i - 1] = MIN(dimsizes[i - 1], H4TOOLS_BUFSIZE / sm_nbytes);
                sm_nbytes *= sm_size[i - 1];
                assert(sm_nbytes > 0);
            }

            sm_buf = malloc((size_t)sm_nbytes);

            /* the stripmine loop */
            memset(hs_offset, 0, sizeof hs_offset);

            for (elmtno = 0; elmtno < p_nelmts; elmtno += hs_nelmts) {
                /* calculate the hyperslab size */
                if (rank > 0) {
                    for (i = 0, hs_nelmts = 1; i < rank; i++) {
                        hs_size[i] = MIN(dimsizes[i] - hs_offset[i], sm_size[i]);
                        hs_nelmts *= hs_size[i];
                    }
                }
                else {
                    hs_nelmts = 1;
                } /* rank */

                /* read */
                if (SDreaddata(sds_id, hs_offset, NULL, hs_size, sm_buf) == FAIL) {
                    printf("Could not read SDS <%s>\n", sds_name);
                    goto out;
                }

                /* write */
                if (SDwritedata(sds_out, hs_offset, NULL, hs_size, sm_buf) == FAIL) {
                    printf("Failed to write to new SDS <%s>\n", path);
                    goto out;
                }

                /* calculate the next hyperslab offset */
                for (i = rank, carry = 1; i > 0 && carry; --i) {
                    hs_offset[i - 1] += hs_size[i - 1];
                    if (hs_offset[i - 1] == dimsizes[i - 1])
                        hs_offset[i - 1] = 0;
                    else
                        carry = 0;
                } /* i */
            }     /* elmtno */

            /* free */
            free(sm_buf);
            sm_buf = NULL;

        } /* hyperslab read */

    } /* empty_sds */

    /*-------------------------------------------------------------------------
     * copy attributes
     *-------------------------------------------------------------------------
     */

    if (copy_sds_attrs(sds_id, sds_out, nattrs, options) == FAIL) {
        goto out;
    }

    /*-------------------------------------------------------------------------
     * copy dimension scales
     *-------------------------------------------------------------------------
     */

    /* loop through each dimension up to rank of SDS */
    for (i = 0; i < rank; i++) {
        int32 dim_size;

        /* get dimension handle for input dimension */
        if ((dim_id = SDgetdimid(sds_id, i)) == FAIL) {
            printf("Failed to get dimension %d of SDS <%s>\n", i, path);
            goto out;
        }
        /* get dimension handle for output dimension */
        if ((dim_out = SDgetdimid(sds_out, i)) == FAIL) {
            printf("Failed to get dim_id for dimension %d of SDS <%s>\n", i, path);
            goto out;
        }
        /* get dimension information for input dimension */
        if (SDdiminfo(dim_id, dim_name, &dim_size, &dtype, &nattrs) == FAIL) {
            printf("Failed to get information for dimension %d of SDS <%s>\n", i, path);
            goto out;
        }

        /* add dimension name to dimension scales table */
        dim_table_add(td2, -1, dim_name);

        /* set output dimension name */
        if (SDsetdimname(dim_out, dim_name) == FAIL) {
            printf("Failed to set dimension name %d of SDS <%s>\n", i, path);
            goto out;
        }
        /* copy attributes */
        if (nattrs && copy_sds_attrs(dim_id, dim_out, nattrs, options) == FAIL) {
            printf("Failed to copy attributes for dimension %d of of SDS <%s>\n", i, path);
            goto out;
        }
        /* copy scale information over */
        if (dtype != 0) {
            intn okdim;

            /* compute the number of the bytes for each value. */
            numtype = dtype & DFNT_MASK;
            eltsz   = DFKNTsize(numtype | DFNT_NATIVE);

            if ((dim_buf = (void *)malloc(dimsizes[i] * eltsz)) == NULL) {
                printf("Failed to alloc %d for dimension scale\n", dimsizes[i]);
                goto out;
            }
            if ((okdim = SDgetdimscale(dim_id, dim_buf)) == FAIL) {
                printf("Warning: Failed to get scale information for %s\n", dim_name);
            }
            if (okdim != FAIL) {
                /* use dimsizes returned by SDgetinfo */
                if (SDsetdimscale(dim_out, dimsizes[i], dtype, dim_buf) == FAIL) {
                    printf("Failed to set scale information for %s\n", dim_name);
                    goto out;
                }
            }
            free(dim_buf);
        }
    }

    /* obtain the reference number of the new SDS using its identifier */
    if ((sds_ref = SDidtoref(sds_out)) == FAIL) {
        printf("Failed to get new SDS reference in <%s>\n", path);
        goto out;
    }

    /*-------------------------------------------------------------------------
     * add SDS to group
     *-------------------------------------------------------------------------
     */

    /* add it to group, if present */
    if (vgroup_id_out_par) {
        /* add the SDS to the vgroup. the tag DFTAG_NDG is used */
        if (Vaddtagref(vgroup_id_out_par, TAG_GRP_DSET, sds_ref) == FAIL) {
            printf("Failed to add new SDS to group <%s>\n", path);
            goto out;
        }
    }

    /*-------------------------------------------------------------------------
     * copy ANs
     *-------------------------------------------------------------------------
     */

    if (copy_an(infile_id, outfile_id, ref, tag, sds_ref, tag, path, options) < 0) {
        goto out;
    }

    /*-------------------------------------------------------------------------
     * close
     *-------------------------------------------------------------------------
     */

    if (SDendaccess(sds_id) == FAIL)
        printf("Failed to close SDS <%s>\n", path);
    if (sds_out != FAIL) {
        if (SDendaccess(sds_out) == FAIL)
            printf("Failed to close SDS <%s>\n", path);
    }

    /*-------------------------------------------------------------------------
     * print compression
     *-------------------------------------------------------------------------
     */

    assert(options->trip == 1);
    if (options->verbose) {

        if (get_print_info(chunk_flags_in, &chunk_def, comp_type, path, sds_name, sd_out) == FAIL)
            goto out;
    }

    free(path);
    free(buf);

    return SUCCEED;

out:
    if (SDendaccess(sds_id) == FAIL)
        printf("Failed to close SDS <%s>\n", path);
    if (sds_out != FAIL) {
        if (SDendaccess(sds_out) == FAIL)
            printf("Failed to close SDS <%s>\n", path);
    }
    free(path);
    free(buf);

    return FAIL;
}

/*-------------------------------------------------------------------------
 * Function: copy_sds_attrs
 *
 * Purpose: copy SD attributes from input file to output file
 *   used for global, dataset and dimension attributes
 *
 * Return: SUCCEED, FAIL
 *
 * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
 *
 * Date: July 30, 2003
 *
 *-------------------------------------------------------------------------
 */

int
copy_sds_attrs(int32 id_in, int32 id_out, int32 nattrs, options_t *options)
{
    int32 dtype, /* SDS data type */
        numtype, /* number type */
        eltsz,   /* element size */
        nelms;   /* number of elements */
    char  attr_name[H4_MAX_NC_NAME];
    void *attr_buf = NULL;
    int   i;

    (void)options;

    /* loop through attributes in input SDS */
    for (i = 0; i < nattrs; i++) {
        if (SDattrinfo(id_in, i, attr_name, &dtype, &nelms) == FAIL) {
            printf("Cannot get information for attribute number %d\n", i);
            goto out;
        }
        /* compute the number of the bytes for each value. */
        numtype = dtype & DFNT_MASK;
        eltsz   = DFKNTsize(numtype | DFNT_NATIVE);
        if ((attr_buf = (void *)malloc(nelms * eltsz)) == NULL) {
            printf("Error allocating %d values of size %d for attribute %s", nelms, numtype, attr_name);
            goto out;
        }
        /* read attributes from input SDS */
        if (SDreadattr(id_in, i, attr_buf) == FAIL) {
            printf("Cannot read attribute %s\n", attr_name);
            goto out;
        }
        /* put attributes into output SDS */
        if (SDsetattr(id_out, attr_name, dtype, nelms, attr_buf) == FAIL) {
            printf("Cannot write attribute %s\n", attr_name);
            goto out;
        }

        free(attr_buf);
    }

    return SUCCEED;

out:

    free(attr_buf);

    return FAIL;
}

/*-------------------------------------------------------------------------
 * get_print_info
 *-------------------------------------------------------------------------
 */

int
get_print_info(int chunk_flags, HDF_CHUNK_DEF *chunk_def, /* chunk definition */
               int comp_type, char *path, char *sds_name, int32 sd_id)

{

    int32  comp_size;
    int32  uncomp_size;
    int32  sds_idx;
    int32  sds_id;
    double a, b, r = 0;
    char  *comp_str  = NULL;
    int    is_record = 0;

    if ((sds_idx = SDnametoindex(sd_id, sds_name)) == FAIL)
        goto out;
    if ((sds_id = SDselect(sd_id, sds_idx)) == FAIL)
        goto out;
    if (SDisrecord(sds_id))
        is_record = 1;
    if (SDgetdatasize(sds_id, &comp_size, &uncomp_size) == FAIL) {
        printf("Could not get data sizes for <%s>\n", sds_name);
        goto out;
    }
    if (SDendaccess(sds_id) == FAIL)
        goto out;

    /* Has to hold a double, which can have a LOT of digits. Even if that
     * isn't realistic in practice, the compiler will complain.
     */
    if (NULL == (comp_str = calloc(1, 512)))
        goto out;

    /* unlimited dimensions don't work with compression */
    if (is_record) {
        comp_type   = COMP_CODE_NONE;
        chunk_flags = HDF_NONE;
    }

    if (comp_type > COMP_CODE_NONE) {

        /* compression ratio = uncompressed size /  compressed size */
        a = uncomp_size;
        b = comp_size;
        if (b != 0)
            r = a / b;

        sprintf(comp_str, "(%.2f:1)", r);
    }

    print_info(chunk_flags, chunk_def, comp_type, path, comp_str);

    free(comp_str);

    return SUCCEED;

out:
    free(comp_str);
    return FAIL;
}

/*-------------------------------------------------------------------------
 * print_info
 *-------------------------------------------------------------------------
 */

void
print_info(int chunk_flags, HDF_CHUNK_DEF *chunk_def, /* chunk definition */
           int comp_type, char *path, char *ratio)
{
    int pr_comp_type = 0;
    int pr_chunk_flags;

    pr_chunk_flags = chunk_flags;

    if (comp_type > 0) {
        pr_comp_type = comp_type;
    }
    else {
        if (pr_chunk_flags == (HDF_CHUNK | HDF_COMP)) {
            pr_comp_type = chunk_def->comp.comp_type;
        }
    }
    printf(PFORMAT, (pr_chunk_flags > 0) ? "chunk" : "",      /*chunk information*/
           (pr_comp_type > 0) ? get_scomp(pr_comp_type) : "", /*compression information*/
           ratio,                                             /*ratio */
           path);                                             /*name*/
}