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|
==========================================================================
= =
= This file contains a history of the HDF4.* releases. =
= =
= To find information about a particular release search =
= for %%%4.#.# string, for example 4.2.6, or =
= for %%%4.#r# string, for example 4.1r2, prior to 2010. =
= List of all releases is at the top of this file. =
= =
= Documents in this file refer to several *.txt files that were =
= originally stored in the release_notes directory of the HDF4 =
= source tree. Those file are now combined into one misc_docs.txt =
= file in the same directory. =
= =
==========================================================================
List of the HDF4 releases
4.3.0 February 2024
4.2.16-2 June 2023 /* patch release */
4.2.16 February 2023
4.2.15 February 2020
4.2.14 June 2018
4.2.13 June 2017
4.2.12 June 2016 /* delayed dues to 1.10 and 1.8.17 releases */
4.2.11 February 2015
4.2.10 February 2014
4.2.9 February 2013
4.2.8 August 2012
4.2.7 February 2012
4.2.6 June 2011
4.2.5 February 2010
4.2r4 January 2009
4.2r3 January 2008
4.2r2 October 2007
4.2r1 February 2005
4.2r0 December 2003
4.2r0-Beta September 2003
4.1r5 November 2001
4.1r4 October 2000
4.1r3 May 1999
4.1r2 March 1998
4.1r1 February 1997
4.1b1 December 1996
4.0r2 July 1996
4.0r1 February 1996
4.0b2 November 1995
4.0b1 July 1995
4.0.alpha November 1994
==========================================================================
%%%4.3.0%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
HDF version 4.3.0 released on 2024-02-29
====================================================
INTRODUCTION
This document describes the differences between this release and the
HDF 4.2.16-2 release. It is written for people who are familiar with
previous releases of HDF and wish to migrate to this version of HDF.
Note that the HDF4 documentation will be updated at the time of
each final release and can be found on the HDF4 support page at:
https://portal.hdfgroup.org/display/HDF4/HDF4
The official HDF4 releases can be obtained from:
https://portal.hdfgroup.org/downloads/index.html
If you have any questions or comments, please send them to the HDF Help Desk:
help@hdfgroup.org
CONTENTS
- New features and changes
-- Configuration
-- C Library
- Bugs fixed since HDF 4.2.16-2
-- Configuration
-- Library
-- Utilities
- Documentation
- Platforms Tested
- Known problems
New features and changes
========================
Configuration:
-------------
- Changed minimum CMake version to 3.18
Requirement for CMake 3.18 allows removal of special checks for message,
EOL checks and Visual Studio 2019 version. Visual Studio 2022 requires
CMake version 3.21.
- Added versioning support to CMake builds
Added config/lt.vers.am file with soversion numbers for each library.
- Removed CMake's HDF_ENABLE_LARGE_FILE option
We now assume that LFS exists, as in the Autotools.
- New option for building and naming tools in CMake
The following option has been added:
HDF4_BUILD_STATIC_TOOLS "Build Static Tools Not Shared Tools" OFF
The default will build shared tools unless BUILD_SHARED_LIBS = OFF.
- XDR changes
We now only support building HDF4 with the XDR implementation packaged
with the HDF4 source, which is always built with the mfhdf library.
The following options have been removed:
Autotools: --enable-hdf4-xdr
CMake: HDF4_BUILD_XDR_LIB
The following header files are no longer deployed:
types.h, xdr.h
The XDR functionality has been incorporated into the mfhdf library,
so a separate XDR library is no longer distributed with either build
system.
- Man pages were removed
The few man pages in the HDF4 library are woefully incomplete and/or
outdated. We have no resources to properly update those and to add the
missing ones. Instead, we will try to create better man pages from Doxygen.
- Incorporated HDF4 examples repository into HDF4 library.
The HDF4Examples folder is equivalent to the repository hdf4-examples.
As such it can build and test the examples during library build or after
the library is installed. Previously, the hdf4-repository archives were
downloaded for packaging with the library. Now the examples can be built
and tested without a packaged install of the library.
However to maintain the ability to use the HDF4Examples with an installed
library, it is necessary to translate or synch the option names from those
used by the library to those used by the examples. The typical pattern is:
<example option> = <library option>
HDF_BUILD_JAVA = ${HDF4_BUILD_JAVA}
- Autotools and CMake target added to produce doxygen generated documentation
The default is OFF or disabled.
Autoconf option is '--enable-doxygen'
autotools make target is 'doxygen' and will build all doxygen targets
CMake configure option is 'HDF4_BUILD_DOC'.
CMake target is 'doxygen' for all available doxygen targets
CMake target is 'hdf4lib_doc' for the src subdirectory
- Added support for CMake presets file.
CMake supports two main files, CMakePresets.json and CMakeUserPresets.json,
that allow users to specify common configure options and share them with others.
HDF added a CMakePresets.json file of a typical configuration and support
file, config/cmake-presets/hidden-presets.json.
Also added a section to INSTALL_CMake.txt with very basic explanation of the
process to use CMakePresets.
- Private headers are no longer deployed
* dfi.h - Declared private, unused, undocumented in UG/RM/DG, has been
removed from the library entirely.
- Dropped support for MacFS I/O
MacFS was an obscure I/O system from the late 90s used to access HFS
volumes on MacOS 9 and earlier (publication CMU-CS-98-145 can be
found via an internet search).
HDF4 allows a library builder to manually specify the FILELIB symbol
found in hdfi.h to use C standard library buffered I/O (fopen, etc.),
POSIX unbuffered I/O (open, etc.), or MacFS I/O (mopen, etc.). The
library default is to use C buffered I/O and there is no obvious
build-time or run-time option to change that. The FILELIB value is
then used to map HI_OPEN, etc. to appropriate I/O calls.
The "alternative" I/O schemes (POSIX unbuffered and MacFS) are not
tested. Due to its age and obscurity, MacFS support is being dropped.
The POSIX unbuffered I/O scheme will remain in place for now since it
might be interesting to profile that vs C stdio.h calls.
This change will have *NO IMPACT* on modern Macs. Files created using
MacFS in the 90s and early 2000s can be accessed using C standard
library I/O.
C Library:
----------
- Private headers are no longer deployed
The following private headers are not a part of the public API and
will no longer be deployed when installing the library:
atom.h
bitvect.h
cdeflate.h
cnbit.h
cnone.h
crle.h
cskphuff.h
cszip.h
dfan.h
dfgr.h
dfrig.h
dfsd.h
dfufp2i.h
dynarray.h
hchunks.h
hcompi.h
hconv.h
hdfi.h
hfile.h
hkit.h
linklist.h
local_nc.h
mfani.h
mfgri.h
mstdio.h
tbbt.h
- Most of hbitio.h moved to hbitio_priv.h
Still in hbitio.h:
* BITNUM #define
* Hputbit() function-like macro
These are referenced in older versions of the reference manual, e.g., in
the Hendbitaccess() entry.
Moved to hbitio_priv.h:
* BITBUF_SIZE, DATANUM #defines
* bitrec_t struct
* maskc and maskl variable declarations
- Most of hfile.h moved to hfile_priv.h
Still in hfile.h:
LIBVER_MAJOR
LIBVER_MINOR
LIBVER_RELEASE
LIBVER_SUBRELEASE
LIBVER_STRING
LIBVSTR_LEN
LIBVER_LEN
Everything else has been moved to hfile_priv.h
NOTE that hfile.h is NOT included via hdf.h and must be included
separately, which is the same behavior as HDF 4.2.x.
- hdfi.h is no longer included by hdf.h
In the past, hdfi.h (an internal header file) was included in the
public hdf.h header. This is no longer the case. Anything that
should be public has been moved from hdfi.h to hdf.h, including:
* The C99-like types (e.g., float32)
* The archaic VOID/VOIDP macros
* The intf Fortran integer type
* The HD library macros (e.g., HDmalloc)
All of these things are considered obsolete and we only maintain
them in the public header so that old code does not have to be
modified. It is unwise to use them in new code.
NOTE: hdfi.h included many POSIX, Windows, and C standard library
headers.
*** THESE WILL NO LONGER BE BROUGHT IN BY INCLUDING HDF.H!!! ***
If you have been relying on hdf.h to bring in headers like
stdlib.h, windows.h, or unistd.h, you will need to update your
code when you move to HDF 4.3.0.
Bugs fixed since HDF 4.2.16-2
===========================
- Corrected handling of SDgetcompress()
SDgetcompress() was deprecated in HDF 4.2.9 (2013) and hidden behind
ifdefs controlled by the --enable-deprecated-symbols (Autotools) and
HDF4_ENABLE_DEPRECATED_SYMBOLS (CMake) options. These ifdefs were
incompletely propagated throughout the library.
In this release:
* CMake builds did not expose H4_NO_DEPRECATED_SYMBOLS via
h4config.h
* The mfhdf.h header now hides the SDgetcompress() call behind an
H4_NO_DEPRECATED_SYMBOLS ifdef (pulled in via h4config.h via hdf.h)
* The Java wrappers now correctly exclude SDgetcompress() when
deprecated symbols are disabled
* The libhdf4.settings file now indicates whether HDF4 was built
with or without deprecated symbols
- Fix --with-szlib with no paths not detecting the encoder
The --with-szlib option in the Autotools has been broken when used
without include/library paths for the past decade (git blame says 11
years ago). A misnamed variable and a missing setting would skip
the encoder check, so the library could only be added in decode-only
mode.
This has been fixed and szip encoding will now be detected normally.
- Build fortran with -fallow-argument-mismatch w/ gcc 10+
The gfortran configuration checks checked the version via a variable that
was never set, preventing -fallow-argument-mismatch from being set w/
gcc 10+, which would prevent building the fortran interface.
Fixes HDFFR-1582
- JNI SDSreaddata functions for float and double used mismatched buffer macros
The SDreaddata_double and SDreaddata_float function created data buffers with
PIN_DOUBLE_ARRAY_CRITICAL and PIN_FLOAT_ARRAY_CRITICAL macros then tried to
free the buffers with UNPIN_DOUBLE_ARRAY and UNPIN_FLOAT_ARRAY macros. This caused
free() call to use an invalid pointer.
Change the macros PIN_DOUBLE_ARRAY_CRITICAL to PIN_DOUBLE_ARRAY and
PIN_FLOAT_ARRAY_CRITICAL to PIN_DOUBLE_ARRAY.
Github issue #355
- Vstart/Vinitialize did not fail as expected
User simulated a failure in Vstart while using hrepack, but the
function did not fail as expected.
This is now fixed.
Github issue #354
- DF24getimage caused a segfault when reading corrupted file
When jpeg_start_decompress failed to decompress a corrupted file, the
JPEG library exit with failure, causing a segfault in user's application.
The library now overrides the JPEG routine error_exit to return an
error code instead.
Github issue #295
- SDgetcompinfo returned incorrect option masks for szip compression
A special bit, SZ_H4_REV_2, was used to indicate that the szip info
was stored in a new way. This bit was set in the options mask field
of the szip info struct. As a result, the value of options mask
became incorrect. For example, an option mask value was 132 but with
the special bit set, it was returned as 65668.
In this release, the special bit is removed from the option mask before
it is returned to the application. This change does not affect the data
format in the file.
JIRA issue HDFFR-82
Documentation
=============
Platforms Tested
================
This version has been tested in the following platforms:
(Format:
uname -s, uname -r
uname -v, uname -p, uname -m)
Linux 6.7.4 GNU gcc (GCC) 13.2.1
Fedora 39 Clang version 17.0.6
Linux 5.15.0 GNU gcc (GCC) 11.3.0, 11.4.0, 12
Ubuntu SMP x86_64 GNU/Linux GNU Fortran (GCC) 11.3.0, 12
Ubuntu 22.04 Clang version 14.0.0
Intel OneApi 2023.1.0, 2023.2.0, 2024.0
Nvidia nvc 23.9
AOCC 4.1.0, Clang 16.0.3
Mingw, GNU GCC 10.0.0
(cmake and autotools)
Linux 5.13.0 GNU gcc (GCC) 9.4.0
Ubuntu SMP x86_64 GNU/Linux GNU Fortran (GCC) 9.4.0
Ubuntu 20.04 Clang version 10.0.0
Intel OneApi 2023.1.0
(cmake and autotools)
Linux 4.18.0-348.7.1.el8_5 gcc (GCC) 8.5.0 20210514 (Red Hat 8.5.0-4)
#1 SMP x86_64 GNU/Linux GNU Fortran (GCC) 8.5.0 20210514 (Red Hat 8.5.0-4)
CentOS8 clang version 12.0.1 (Red Hat 12.0.1)
Intel OneApi 2023.1.0
(cmake and autotools)
Linux 3.10.0-1160.36.2.el7.ppc64 gcc (GCC) 4.8.5 20150623 (Red Hat 4.8.5-39)
#1 SMP ppc64 GNU/Linux g++ (GCC) 4.8.5 20150623 (Red Hat 4.8.5-39)
(echidna) GNU Fortran (GCC) 4.8.5 20150623 (Red Hat 4.8.5-39)
IBM XL C/C++ V13.1
IBM XL Fortran V15.1f
Linux 3.10.0-327.18.2.el7.x86_64 GNU C (gcc) and Fortran (gfortran) compilers:
#1 SMP x86_64, GNU/Linux Version 4.8.5 20150623 (Red Hat 4.8.5-4)
(jelly/moohan) Version 5.3.0, 6.3.0, 7.2.0, 8.3.0, 9.1.0, 10.2.0
Intel(R) C (icc) and Fortran (ifort) compilers:
Version 17.0.0.098 Build 20160721
pgcc and pgf90 17.10-0 64-bit target
on x86-64 Linux -tp haswell
Linux 2.6.32-754.11.1.el6.x86_64 gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)
#1 SMP, x86_64 GNU Fortran (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)
(platypus) icc (ICC) 17.0.0.098 Build 20160721
ifort (IFORT) 17.0.0.098 Build 20160721
pgcc and pgf90 17.10-0 64-bit target
on x86-64 Linux -tp nehalem
macOS Sonoma 14 Apple clang version 15.0.7
Darwin 23.2.0 arm64 Clang 17.0.0
macOS Ventura 13.6.4 Apple clang version 15.0.0
Darwin 22.6.0 x86_64
macOS Monterey 12 Apple clang version 14.0.0
Darwin 21.6.0 x86_64 gfortran GNU Fortran (Homebrew GCC 13.2.0) 13.2.0
(philo) Intel icc/icpc/ifort version 2021.10.0 20230609
macOS Apple M1 11.7.3 Apple clang version 13.0.0 (clang-1300.0.29.30)
Darwin 20.6.0 arm64 gfortran GNU Fortran (Homebrew GCC 12.2.0) 12.2.0
(macmini-m1) Intel icc/icpc/ifort version 2021.8.0 20221120
macOS Big Sur 11.7.3 Apple clang version 12.0.5 (clang-1205.0.22.9)
Darwin 20.4.0 x86_64 gfortran GNU Fortran (Homebrew GCC 12.2.0) 12.2.0
(bigsur-1) Intel icc/icpc/ifort version 2021.7.1 20221019
Windows 10 x64 Visual Studio 2019 w/ clang 12.0.0
with MSVC-like command-line (C/C++ only - cmake)
Visual Studio 2019 w/ Intel C/C++/Fortran oneAPI 2024 (cmake)
Visual Studio 2022 w/ clang 17.0.1
with MSVC-like command-line (C/C++ only - cmake)
Visual Studio 2022 w/ Intel C/C++/Fortran oneAPI 2024 (cmake)
Known problems
==============
o The Fortran interface does not work on 64-bit systems as it stores addresses
in memory as Fortran INTEGER values, which are typically 32-bit. The
Fortran interface is currently disabled by default due to this. It should
only be enabled on 32-bit systems.
o Builds with the autotools option --enable-hdf4-xdr fail on Solaris and
on IBM ppc64 with the xlc compiler. The option should not be used on
those platforms.
o A number of tools and tests fail to free small amounts of memory if they
are just going to exit anyway. This doesn't appear to be a memory leak
in the core library. We're planning to fix these leaks in future releases,
likely by modifying these tools to have a single point of return, where
resource cleanup will be carried out.Â
o CMake files do not behave correctly with paths containing spaces.
Do not use spaces in paths because the required escaping for handling spaces
results in very complex and fragile build files.
ADB - 2019/05/07
o Several Fortran examples print "^@" when displaying strings (for example,
names of the attributes). This happens because Fortran application
doesn't know the length of the strings passed from the C library.
EIP - 2015-01-11, HDFFR-1477
o CMake fails to set the full path to the install location on Windows:
The configuration file for examples, HDF4_Examples.cmake, must be updated
with the correct value by editing the file or using the INSTALLDIR option.
This issue is because of spaces in the path.
ADB - 2014/02/03
o CMake "make install" fails installing the tools:
Use CPack to create an install package.
ADB - 2014/02/03
o On IBM PowerPC 64, hdftest fails when gcc 4.4.6 is used with -O3 optimization
level.
o When building on Linux/UNIX platforms, the szip shared library files must
be in the system library path. This can be done by adding a link to
the libsz.* files in the /usr/lib folder or by adding the library
location to the LD_LIBRARY_PATH environment variable.
Ex. export LD_LIBRARY_PATH=path_to_szip_lib:$LD_LIBRARY_PATH
Optionally, one can use the static szip library files by adding '-static'
to the CFLAGS environment variable.
o Existing data written by an HDF4 Library prior to HDF 4.2r2:
When a one-dimensional SDS and a dimension scale have
the same name, subsequent accesses to the dimension scale or to the
SDS might produce undesired results because the libraries could not
distinguish between the two objects. In the case of writing, data
might even be corrupted. For example, SDS data might be written to a
dimension variable or vice versa. (bugzilla #624)
HDF4 Library Releases 4.2r2 and later make a distinction between an SDS
and a dimension variable. However, as with older versions, these recent
versions are unable to detect such conflicts in files created by earlier
releases. It is therefore STRONGLY recommended to check for such name
duplication before working with data created with a pre-4.2r2 library.
The functions SDgetnumvars_byname and SDnametoindices are provided
to help detect such name conflicts and select the correct object to
access, respectively; see the HDF Reference Manual entries for
further details.
FB - 2009/01/26
BMR - revised 2011/06/24
o N-bit compression is not supported with Fortran APIs.
o Using both fill-value and compression on SD datasets does not work.
o When using PGI compilers, make sure that the JPEG library is also compiled
with a PGI C compiler; linking with a JPEG library built with gcc causes
JPEG library tests to fail. To bypass the problem:
x Set LIBS flag to $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
where $PGI_JPEG_INSTALL_DIR points to the installation directory
for the PGI-compiled JPEG library:
setenv LIBS $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
x Use the --with-jpeg=$PGI_JPEG_INSTALL_DIR configure flag to
configure with the PGI-compiled JPEG library:
./configure --with-jpeg=$PGI_JPEG_INSTALL_DIR --with-zlib....
o In order for the API SDgetdatasize to get the correct compressed size
of the data, the dataset needs to be closed (SDendaccess) or read
(SDreaddata) after being written and before SDgetdatasize is called.
BMR - 2008/11/22
%%%4.2.16-2%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
HDF version 4.2.16-2 released on 2023-06-30
====================================================
INTRODUCTION
This document describes the differences between this release and the
HDF 4.2.16 release. It is written for people who are familiar with
previous releases of HDF and wish to migrate to this version of HDF.
Note that the HDF4 documentation will be updated at the time of
each final release and can be found on the HDF4 support page at:
https://portal.hdfgroup.org/display/HDF4/HDF4
The official HDF4 releases can be obtained from:
https://portal.hdfgroup.org/display/support/Download+HDF4
If you have any questions or comments, please send them to the HDF Help Desk:
help@hdfgroup.org
CONTENTS
- New features and changes
-- Configuration
- Support for new platforms and compilers
- Bugs fixed since HDF 4.2.16
-- Configuration
-- Library
-- Utilities
- Documentation
- Platforms Tested
- Known problems
New features and changes
========================
None since HDF 4.2.16, see HDF 4.2.16 history for the complete list since
HDF 4.2.15. This is only a patch release of HDF 4.2.16.
Support for new platforms and compilers
=======================================
- CMake added support for clang 12.0.0 with MSVC-like command line in VS2019,
and for VS2022 with clang 15.0.1 and with Intel oneAPI 2022
- Ubuntu 22.04, Linux 5.15.0 with GCC 11.3.0 and clang version 14.0.0-1
- Ubuntu 20.04, Linux 5.13.0 with GCC 9.4.0 and clang version 10.0.0-4
- macOS M1 11.7.3, Darwin 20.6.0 with Apple clang version 13.0.0 and
Intel icc/icpc/ifort version 2021.8.0
- macOS Big Sur 11.7.3, Darwin 20.4.0 with Apple clang version 12.0.5 and
Intel icc/icpc/ifort version 2021.7.1
Bugs fixed since HDF 4.2.16
===========================
- Fixed an external file bug introduced in 4.2.16
Fixing HDFFR-1607 introduced a bug where the flag that indicates whether
the external file directory has been changed from the previous location
was not reset properly.
Reset the flag after building a filename path for an external element.
Fixes HDFFR-1609
- Build fortran with -fallow-argument-mismatch w/ gcc 10+
The gfortran configuration checks checked the version via a variable that
was never set, preventing -fallow-argument-mismatch from being set w/
gcc 10+, which would prevent building the fortran interface.
Fixes HDFFR-1582
- JNI SDSreaddata functions for float and double used mismatched buffer macros
The SDreaddata_double and SDreaddata_float function created data buffers with
PIN_DOUBLE_ARRAY_CRITICAL and PIN_FLOAT_ARRAY_CRITICAL macros then tried to
free the buffers with UNPIN_DOUBLE_ARRAY and UNPIN_FLOAT_ARRAY macros. This caused
free() call to use an invalid pointer.
Change the macros PIN_DOUBLE_ARRAY_CRITICAL to PIN_DOUBLE_ARRAY and
PIN_FLOAT_ARRAY_CRITICAL to PIN_FLOAT_ARRAY.
Github issue #355
Documentation
=============
Platforms Tested
================
This version has been tested in the following platforms:
(Format:
uname -s, uname -r
uname -v, uname -p, uname -m)
Linux 5.15.0-1026-aws gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
#30-Ubuntu SMP x86_64 GNU/Linux GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
Ubuntu 22.04 Ubuntu clang version 14.0.0-1ubuntu1
(cmake and autotools)
Linux 5.15.0 GNU gcc (GCC) 11.3.0
Ubuntu SMP x86_64 GNU/Linux GNU Fortran (GCC) 11.3.0-
Ubuntu 22.04 Ubuntu clang version 10.0.0-4
(mingw64) (cmake and autotools)
Linux 5.13.0-1031-aws GNU gcc (GCC) 9.4.0-1ubuntu1
#35-Ubuntu SMP x86_64 GNU/Linux GNU Fortran (GCC) 9.4.0-1ubuntu1
Ubuntu 20.04 clang version 10.0.0-4ubuntu1
(cmake and autotools)
Linux 4.18.0-348.7.1.el8_5 gcc (GCC) 8.5.0 20210514 (Red Hat 8.5.0-4)
#1 SMP x86_64 GNU/Linux GNU Fortran (GCC) 8.5.0 20210514 (Red Hat 8.5.0-4)
CentOS8 clang version 12.0.1 (Red Hat 12.0.1)
(cmake and autotools)
Linux 3.10.0-1160.36.2.el7.ppc64 gcc (GCC) 4.8.5 20150623 (Red Hat 4.8.5-39)
#1 SMP ppc64 GNU/Linux g++ (GCC) 4.8.5 20150623 (Red Hat 4.8.5-39)
(echidna) GNU Fortran (GCC) 4.8.5 20150623 (Red Hat 4.8.5-39)
IBM XL C/C++ V13.1
IBM XL Fortran V15.1
Linux 3.10.0-327.18.2.el7.x86_64 GNU C (gcc) and Fortran (gfortran) compilers:
#1 SMP x86_64, GNU/Linux Version 4.8.5 20150623 (Red Hat 4.8.5-4)
jelly/moohan) Version 4.9.3, 5.3.0, 6.2.0, 7.1.0, 8.3.0
Intel(R) C (icc) and Fortran (ifort) compilers:
Version 17.0.0.098 Build 20160721
pgcc and pgf90 17.10-0 64-bit target
on x86-64 Linux -tp haswell
Linux 2.6.32-754.11.1.el6.x86_64 gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)
#1 SMP, x86_64 GNU Fortran (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)
(platypus) icc (ICC) 17.0.0.098 Build 20160721
ifort (IFORT) 17.0.0.098 Build 20160721
pgcc and pgf90 17.10-0 64-bit target
on x86-64 Linux -tp nehalem
macOS Apple M1 11.7.3 Apple clang version 13.0.0 (clang-1300.0.29.30)
Darwin 20.6.0 arm64 gfortran GNU Fortran (Homebrew GCC 12.2.0) 12.2.0
(macmini-m1) Intel icc/icpc/ifort version 2021.8.0 20221120
macOS Big Sur 11.7.3 Apple clang version 12.0.5 (clang-1205.0.22.9)
Darwin 20.4.0 x86_64 gfortran GNU Fortran (Homebrew GCC 12.2.0) 12.2.0
(bigsur-1) Intel icc/icpc/ifort version 2021.7.1 20221019
macOS High Sierra 10.13.6 Apple LLVM version 10.0.0 (clang-1000.10.44.4)
64-bit gfortran GNU Fortran (GCC) 6.3.0
(bear) Intel icc/icpc/ifort version 18.0.4.233 20190416
macOS Sierra 10.12.6 Apple LLVM version 9.0.0 (clang-900.39.2)
64-bit gfortran GNU Fortran (GCC) 7.4.0
(kite) Intel icc/icpc/ifort version 17.0.2
Mac OS X El Capitan 10.11.5 Apple clang version 7.3 from Xcode 7.3
Darwin 15.6.0 x86_64 gfortran GNU Fortran (GCC) 5.2.0
(osx1011test) Intel icc and ifort version 15.0.3
Windows 10 x64 Visual Studio 2019 w/ clang 12.0.0
with MSVC-like command-line (C/C++ only - cmake)
Visual Studio 2019 w/ Intel C/C++/Fortran oneAPI 2023 (cmake)
Visual Studio 2022 w/ clang 15.0.1
with MSVC-like command-line (C/C++ only - cmake)
Visual Studio 2022 w/ Intel C/C++/Fortran oneAPI 2023 (cmake)
Known problems
==============
o The Fortran interface does not work on 64-bit systems as it stores addresses
in memory as Fortran INTEGER values, which are typically 32-bit. The
Fortran interface is currently disabled by default due to this. It should
only be enabled on 32-bit systems.
o Builds with the autotools option --enable-hdf4-xdr fail on Solaris and
on IBM ppc64 with the xlc compiler. The option should not be used on
those platforms.
o When building HDF4 in 32-bit mode on 64-bit Linux platforms with the -m32
flag, many tests fail with errors converting data. We have not seen these
test failures building on 32-bit systems. The problem seems to be caused
specifically by building with the -m32 flag on 64-bit systems. It will be
investigated; the -m32 flag on 64-bit systems should not be used with this
HDF4 release.
o A number of tools and tests fail to free small amounts of memory if they
are just going to exit anyway. This doesn't appear to be a memory leak
in the core library. We're planning to fix these leaks in future releases,
likely by modifying these tools to have a single point of return, where
resource cleanup will be carried out.Â
o CMake files do not behave correctly with paths containing spaces.
Do not use spaces in paths because the required escaping for handling spaces
results in very complex and fragile build files.
ADB - 2019/05/07
o Several Fortran examples print "^@" when displaying strings (for example,
names of the attributes). This happens because Fortran application
doesn't know the length of the strings passed from the C library.
EIP - 2015-01-11, HDFFR-1477
o CMake fails to set the full path to the install location on Windows:
The configuration file for examples, HDF4_Examples.cmake, must be updated
with the correct value by editing the file or using the INSTALLDIR option.
This issue is because of spaces in the path.
ADB - 2014/02/03
o CMake "make install" fails installing the tools:
Use CPack to create an install package.
ADB - 2014/02/03
o CMake does not install these man pages:
hdf.1, ncdump.1, ncgen.1
AKC/BMR - 2014/02/02
o On IBM PowerPC 64, hdftest fails when gcc 4.4.6 is used with -O3 optimization
level.
o When building on Linux/UNIX platforms, the szip shared library files must
be in the system library path. This can be done by adding a link to
the libsz.* files in the /usr/lib folder or by adding the library
location to the LD_LIBRARY_PATH environment variable.
Ex. export LD_LIBRARY_PATH=path_to_szip_lib:$LD_LIBRARY_PATH
Optionally, one can use the static szip library files by adding '-static'
to the CFLAGS environment variable.
o Existing data written by an HDF4 Library prior to HDF 4.2r2:
When a one-dimensional SDS and a dimension scale have
the same name, subsequent accesses to the dimension scale or to the
SDS might produce undesired results because the libraries could not
distinguish between the two objects. In the case of writing, data
might even be corrupted. For example, SDS data might be written to a
dimension variable or vice versa. (bugzilla #624)
HDF4 Library Releases 4.2r2 and later make a distinction between an SDS
and a dimension variable. However, as with older versions, these recent
versions are unable to detect such conflicts in files created by earlier
releases. It is therefore STRONGLY recommended to check for such name
duplication before working with data created with a pre-4.2r2 library.
The functions SDgetnumvars_byname and SDnametoindices are provided
to help detect such name conflicts and select the correct object to
access, respectively; see the HDF Reference Manual entries for
further details.
FB - 2009/01/26
BMR - revised 2011/06/24
o N-bit compression is not supported with Fortran APIs.
o Using both fill-value and compression on SD datasets does not work.
o When using PGI compilers, make sure that the JPEG library is also compiled
with a PGI C compiler; linking with a JPEG library built with gcc causes
JPEG library tests to fail. To bypass the problem:
x Set LIBS flag to $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
where $PGI_JPEG_INSTALL_DIR points to the installation directory
for the PGI-compiled JPEG library:
setenv LIBS $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
x Use the --with-jpeg=$PGI_JPEG_INSTALL_DIR configure flag to
configure with the PGI-compiled JPEG library:
./configure --with-jpeg=$PGI_JPEG_INSTALL_DIR --with-zlib....
o In order for the API SDgetdatasize to get the correct compressed size
of the data, the dataset needs to be closed (SDendaccess) or read
(SDreaddata) after being written and before SDgetdatasize is called.
BMR - 2008/11/22
%%%4.2.16%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
HDF version 4.2.16 released on 2023-03-06
====================================================
INTRODUCTION
This document describes the differences between this release and the
HDF 4.2.15 release. It is written for people who are familiar with
previous releases of HDF and wish to migrate to this version of HDF.
Note that the HDF4 documentation will be updated at the time of
each final release and can be found on the HDF4 support page at:
https://portal.hdfgroup.org/display/HDF4/HDF4
The official HDF4 releases can be obtained from:
https://portal.hdfgroup.org/display/support/Download+HDF4
If you have any questions or comments, please send them to the HDF Help Desk:
help@hdfgroup.org
CONTENTS
- New features and changes
-- Configuration
- Support for new platforms and compilers
- Bugs fixed since HDF 4.2.15
-- Configuration
-- Library
-- Utilities
- Documentation
- Platforms Tested
- Known problems
New features and changes
========================
Configuration:
-------------
- The Autotools no longer strip -g from production CFLAGS
configure would strip -g from CFLAGS when --enable-production was
specified. This is no longer the case.
(DER - 2023/03/01)
- The Autotools now set -DNDEBUG/-UNDEBUG via build mode
Several makefiles set -DNDEBUG for all build modes. This is now set
via the build mode configure options. Production sets -DNDEBUG and
development sets -UNDEBUG.
(DER - 2023/03/01)
- Tools are now built by default in CMake
The option to build and test the HDF4 tools hdiff, hrepack, hdfimport,
and dumper was disabled by default. It is now enabled by default.
This option also controls the ability to build the netCDF tools.
(DER - 2023/02/28)
- Added an option to disable building the netCDF tools ncdump and ncgen
HDF4 builds netCDF 2.3.2 versions of ncdump and ncgen. These can conflict
with the official versions so an option to disable building them has
been added.
CMake: HDF_ENABLE_NETCDF_TOOLS
Autotools: --enable-netcdf-tools
This option can be set independently of the option that controls netCDF
name mangling (HDF_ENABLE_NETCDF / --enable-netcdf) as no C library
functionality is affected by that option.
This option is enabled by default. HDF4_BUILD_TOOLS must be enabled to
build the netCDF tools.
(DER - 2023/02/28)
- Removed checks for flex/lex and bison/yacc in the Autotools
flex and bison are only needed to regenerate the ncgen parser files.
This is done via bin/genparser and not using Makefiles, so the checks
for these programs have been removed from configure (they were never
checked for in CMake).
(DER - 2023/02/23)
- Removed VOID and VOIDP from hdfi.h
These were typedef'd to void and void *, respectively. Although they did
not appear in the public API, they were used in the examples.
(DER - 2023/02/05)
- Added Intel OneAPI compiler support to the configuration files
The CMake toolchain file for Intel was updated to allow the
LLVM based compilers to be chosen. The autotools config for
Intel check for the new compiler name; icx.
(ADB - 2023/02/02)
- Updated the warnings flags for compilers with files for gcc,
clang and Intel compilers.
As explained in a README file in config, the warnings are generally
version-specific based on a common file. Warnings that are no longer
an issue are configured to generate an error if it is accidentally
introduced. Other compilers could be added.
(ADB - 2023/01/31)
- The FreeBSD Autotools config was updated to work like MacOS and Linux
The config/freebsd file was updated to try a variety of compilers and
the default was set to 'cc', which should map to clang. Fortran is less
well tested due to its issues with 64-bit systems, but the default
of 'f77' was left alone.
It may be necessary to specify --with-jpeg=/usr/local if libjpeg was
installed via the package manager.
(DER - 2023/01/25)
- The vattr.h header file is no longer distributed
This header file was empty aside from including hdf.h and vg.h.
(DER - 2023/01/22)
- Better Autotools compiler support on Linux and MacOS
The machine configuration files have been split into machine and
compiler files, which have been updated with additional warning
flags and compiler support.
Both Linux and MacOS now support:
* gcc
* clang
* icc/icx
(DER - 2023/01/20)
- The Fortran interface is considered deprecated
The Fortran interface is broken on 64-bit systems (see the known
problems section) and is currently disabled by default. It may
be removed in a future version of the library or replaced with an
alternative Fortran wrapper, possibly as early as 4.2.17.
(DER - 2023/01/15)
- Fixed-width HDF4 types like int16 now map to C99 types under the hood
In an effort to make HDF4 more maintainable and "just work" for more
platforms, the scheme where HDF4 fixed-width integer types like int16
were mapped to C native types like int and short has been replaced
with a system that maps them to equivalent C99 types.
(DER - 2023/01/15)
- Changed how maintainer mode works in the Autotools
The macro has changed from AM_MAINTAINER_MODE to
AM_MAINTAINER_MODE([enable]) in master and AM_MAINTAINER_MODE([disable])
at release time. The main change is that build dependencies will be ON
by default in master so out-of-date configure, Makefile.in will be
regenerated when their input files (configure.ac, Makefile.am, etc.)
change.
We previously used the macro with no parameter since we checked in the
Autotools-generated files. This allowed switching on maintainer mode
with a command-line option, but left maintainer mode off to avoid
regenerating the build files when checking out from git did not
preserve timestamps, making the files look out-of-date. Now that we no
longer check in Autotools-geneated files, we can turn the
dependencies on.
Detailed comments about the behavior of this macro have been added to
configure.ac where we define the macro.
(DER - 2023/01/13)
- Removed the hdf/util/MacProjects directory
It's unclear what build system these were for, but they have been
unmaintained for some time and have been removed. MacOS users can
build with the Autotools or CMake.
(DER - 2023/01/13)
- Dropped support for many obsolete platforms
HDF4 uses pre-defined machine configurations instead of configure tests
to include header files, set up typedefs, etc. In the future, the
library will be adapted to use a flexible configure test scheme like
HDF5, but in the meantime we have simplified the machine configuration
header by dropping configurations for the following platforms:
- Irix / MIPS
- Itanium
- Intel i860
- Fujitsu VP
- Convex
- "K&R Sun" and Solaris on x86
- DEC Alpha
- Apollo
- HP-UX / HP-9000
- Motorola m88k
- NeXT
- MacOS on PowerPC chipsets
- IBM RS/6000
In addition, many #defines have been updated to reflect modern usage,
particularly on Windows and MacOS.
(DER - 2023/01/13)
- Added new option to build jpeg, libaec and zlib inline with CMake.
Using the CMake FetchContent module, the external filters can populate
content at configure time via any method supported by the ExternalProject
module. Whereas ExternalProject_Add() downloads at build time, the
FetchContent module makes content available immediately, allowing the
configure step to use the content in commands like add_subdirectory(),
include() or file() operations.
The HDF options (and defaults) for using this are:
BUILD_JPEG_WITH_FETCHCONTENT:BOOL=OFF
JPEG_USE_LOCALCONTENT:BOOL=OFF
BUILD_SZIP_WITH_FETCHCONTENT:BOOL=OFF
LIBAEC_USE_LOCALCONTENT:BOOL=OFF
BUILD_ZLIB_WITH_FETCHCONTENT:BOOL=OFF
ZLIB_USE_LOCALCONTENT:BOOL=OFF
The CMake variables to control the path and file names:
JPEG_TGZ_ORIGPATH:STRING
JPEG_TGZ_ORIGNAME:STRING
LIBAEC_TGZ_ORIGPATH:STRING
LIBAEC_TGZ_ORIGNAME:STRING
ZLIB_TGZ_ORIGPATH:STRING
ZLIB_TGZ_ORIGNAME:STRING
See the CMakeFilters.cmake and config/cmake/cacheinit.cmake files for usage.
(ADB - 2023/01/13)
- Removed all references to C++
HDF4 does not have a C++ wrapper and, like HDF5, we do not support
building the library with a C++ compiler since the languages are
diverging.
Despite this, some parts of the build system checked for a C++ compiler,
manipulated CXXFLAGS, etc. This was mainly in files that were brought
over from HDF5. This build system code has been removed.
As a part of this C++ cleanup, the extern "C" ifdefs in the header files
no longer test for c_plusplus.
(DER - 2023/01/13)
- The Fortran interface is disabled by default
The Fortran interface is unsafe on 32-bit systems as it stores pointers
in 32-bit integers. It will be removed in a future release, but for now
it will be disabled by default in both CMake and the Autotools.
(DER - 2023/01/12)
- Add new CMake configuration variable HDF4_USE_GNU_DIRS
HDF4_USE_GNU_DIRS (default OFF) selects the use of GNU Coding Standard install
directory variables by including the CMake module, GNUInstallDirs(see CMake
documentation for details). The HDF_DIR_PATHS macro in the HDFMacros.cmake file
sets various PATH variables for use during the build, test and install processes.
By default, the historical settings for these variables will be used.
(ADB - 2022/10/21)
- Corrected path searched by CMake find_package command
The install path for cmake find_package files had been changed to use
"share/cmake"
on all platforms. However, the trailing "hdf4" directory was not removed
at that time. This "hdf4" additional directory has been removed from all
the install paths.
(ADB - 2021/09/27)
- Corrected pkg-config compile script
It was discovered that the position of the "$@" argument for the command
in the compile script may fail on some platforms and configurations. The
position of the "$@"command argument was moved to a position before the
pkg-config sub command.
(ADB - 2021/08/30)
- CMake option to use AEC (open source SZip) library instead of SZip
The open source AEC library is a replacement library for SZip. In
order to use it for hdf4 the libaec CMake source was changed to add
"-fPIC" and exclude test files. Autotools does not build the
compression libraries within hdf4 builds. New option USE_LIBAEC is
required to compensate for the different files produced by AEC build.
(ADB - 2020/04/22, OESS-65)
Support for new platforms and compilers
=======================================
- CMake added support for clang 12.0.0 with MSVC-like command line in VS2019,
and for VS2022 with clang 15.0.1 and with Intel oneAPI 2022
- Ubuntu 22.04, Linux 5.15.0 with GCC 11.3.0 and clang version 14.0.0-1
- Ubuntu 20.04, Linux 5.13.0 with GCC 9.4.0 and clang version 10.0.0-4
- macOS M1 11.7.3, Darwin 20.6.0 with Apple clang version 13.0.0 and
Intel icc/icpc/ifort version 2021.8.0
- macOS Big Sur 11.7.3, Darwin 20.4.0 with Apple clang version 12.0.5 and
Intel icc/icpc/ifort version 2021.7.1
Bugs fixed since HDF 4.2.15
===========================
- Applied a user's patch to fix a failure with SDwritedata
The access to an internal element was not terminated in one of the SD
APIs causing the subsequent call to SDwritedata to fail. The user's
patch ended access to the element.
(BMR - 2023/03/01, HDFFR-1573)
- Corrected the setting of directory for external file
When application called HXsetdir after a read of an external data, the
new setting of the external directory did not have any effect because
the library would just use the currently opened file. The library now
closes the opened external file and reopens it at the new location if
the external directory is changed.
(BMR - 2023/02/22, HDFFR-1607)
- Correct theCMake generated pkg-config file
The pkg-config file generated by CMake had the order and placement of the
libraries wrong. Also added support for debug library names.
Changed the order of Libs.private libraries so that dependencies come after
dependents. Did not move the compression libraries into Requires.private
because there was not a way to determine if the compression libraries had
supported pkconfig files. Still recommend that the CMake config file method
be used for building projects with CMake.
(ADB - 2023/02/16)
- Fixed a small memory leak in the atom code
The atom list hast table of each atom group list was not cleaned up at
library shutdown, leading to a small memory leak (at most, a few kB).
(DER - 2023/01/29)
- Specifying CC on the command line works correctly in the Autotools
The CC variable was processed incorrectly in the Autotools build files
which led to minimal CFLAGS, etc. flags being specified when anything
other than CC=gcc was specified.
(DER - 2023/01/20)
- --enable-production in the Autotools works correctly
The variable that was checked when processing --enable-production in
the Autotools was spelled incorrectly, leading an Autotools build
to default to a "user defined" build that specified minimal flags
in CFLAGS, etc.
(DER - 2023/01/20)
- A segfault is replaced by a failure
A segfault had occurred when reading a user's file. Examining the file
contents showed that the value for the number of fields in one of the
vdata had been corrupted and became larger than the maximum number of
fields allowed in a vdata. The library now detects such situation and
fails instead of producing a segfault.
(BMR - 2023/01/19, HDFFR-1593)
- jpeglib.h `boolean` type no longer conflicts with windows.h
jpeglib.h defines a `boolean` type that conflicts with the `boolean`
type defined in windows.h. In previous versions of the library, this
could cause compilation errors when the types clashed.
We now ensure that `HAVE_BOOLEAN` is defined before jpeglib.h when
building on Windows, which avoids the redefinition.
(DER - 2022/01/15)
Documentation
=============
Platforms Tested
================
This version has been tested in the following platforms:
(Format:
uname -s, uname -r
uname -v, uname -p, uname -m)
Linux 5.15.0-1026-aws gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
#30-Ubuntu SMP x86_64 GNU/Linux GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
Ubuntu 22.04 Ubuntu clang version 14.0.0-1ubuntu1
(cmake and autotools)
Linux 5.15.0 GNU gcc (GCC) 11.3.0
Ubuntu SMP x86_64 GNU/Linux GNU Fortran (GCC) 11.3.0-
Ubuntu 22.04 Ubuntu clang version 10.0.0-4
(mingw64) (cmake and autotools)
Linux 5.13.0-1031-aws GNU gcc (GCC) 9.4.0-1ubuntu1
#35-Ubuntu SMP x86_64 GNU/Linux GNU Fortran (GCC) 9.4.0-1ubuntu1
Ubuntu 20.04 clang version 10.0.0-4ubuntu1
(cmake and autotools)
Linux 4.18.0-348.7.1.el8_5 gcc (GCC) 8.5.0 20210514 (Red Hat 8.5.0-4)
#1 SMP x86_64 GNU/Linux GNU Fortran (GCC) 8.5.0 20210514 (Red Hat 8.5.0-4)
CentOS8 clang version 12.0.1 (Red Hat 12.0.1)
(cmake and autotools)
Linux 3.10.0-1160.36.2.el7.ppc64 gcc (GCC) 4.8.5 20150623 (Red Hat 4.8.5-39)
#1 SMP ppc64 GNU/Linux g++ (GCC) 4.8.5 20150623 (Red Hat 4.8.5-39)
(echidna) GNU Fortran (GCC) 4.8.5 20150623 (Red Hat 4.8.5-39)
IBM XL C/C++ V13.1
IBM XL Fortran V15.1
Linux 3.10.0-327.18.2.el7.x86_64 GNU C (gcc) and Fortran (gfortran) compilers:
#1 SMP x86_64, GNU/Linux Version 4.8.5 20150623 (Red Hat 4.8.5-4)
jelly/moohan) Version 4.9.3, 5.3.0, 6.2.0, 7.1.0, 8.3.0
Intel(R) C (icc) and Fortran (ifort) compilers:
Version 17.0.0.098 Build 20160721
pgcc and pgf90 17.10-0 64-bit target
on x86-64 Linux -tp haswell
Linux 2.6.32-754.11.1.el6.x86_64 gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)
#1 SMP, x86_64 GNU Fortran (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)
(platypus) icc (ICC) 17.0.0.098 Build 20160721
ifort (IFORT) 17.0.0.098 Build 20160721
pgcc and pgf90 17.10-0 64-bit target
on x86-64 Linux -tp nehalem
macOS Apple M1 11.7.3 Apple clang version 13.0.0 (clang-1300.0.29.30)
Darwin 20.6.0 arm64 gfortran GNU Fortran (Homebrew GCC 12.2.0) 12.2.0
(macmini-m1) Intel icc/icpc/ifort version 2021.8.0 20221120
macOS Big Sur 11.7.3 Apple clang version 12.0.5 (clang-1205.0.22.9)
Darwin 20.4.0 x86_64 gfortran GNU Fortran (Homebrew GCC 12.2.0) 12.2.0
(bigsur-1) Intel icc/icpc/ifort version 2021.7.1 20221019
macOS High Sierra 10.13.6 Apple LLVM version 10.0.0 (clang-1000.10.44.4)
64-bit gfortran GNU Fortran (GCC) 6.3.0
(bear) Intel icc/icpc/ifort version 18.0.4.233 20190416
macOS Sierra 10.12.6 Apple LLVM version 9.0.0 (clang-900.39.2)
64-bit gfortran GNU Fortran (GCC) 7.4.0
(kite) Intel icc/icpc/ifort version 17.0.2
Mac OS X El Capitan 10.11.5 Apple clang version 7.3 from Xcode 7.3
Darwin 15.6.0 x86_64 gfortran GNU Fortran (GCC) 5.2.0
(osx1011test) Intel icc and ifort version 15.0.3
Windows 10 x64 Visual Studio 2015 (cmake)
Visual Studio 2017 w/ Intel C/C++/Fortran 19 (cmake)
Visual Studio 2019 w/ clang 12.0.0
with MSVC-like command-line (C/C++ only - cmake)
Visual Studio 2019 w/ Intel C/C++/Fortran oneAPI 2022 (cmake)
Visual Studio 2022 w/ clang 15.0.1
with MSVC-like command-line (C/C++ only - cmake)
Visual Studio 2022 w/ Intel C/C++/Fortran oneAPI 2022 (cmake)
Known problems
==============
o The Fortran interface does not work on 64-bit systems as it stores addresses
in memory as Fortran INTEGER values, which are typically 32-bit. The
Fortran interface is currently disabled by default due to this. It should
only be enabled on 32-bit systems.
o Builds with the autotools option --enable-hdf4-xdr fail on Solaris and
on IBM ppc64 with the xlc compiler. The option should not be used on
those platforms.
o A number of tools and tests fail to free small amounts of memory if they
are just going to exit anyway. This doesn't appear to be a memory leak
in the core library. We're planning to fix these leaks in future releases,
likely by modifying these tools to have a single point of return, where
resource cleanup will be carried out.Â
o CMake files do not behave correctly with paths containing spaces.
Do not use spaces in paths because the required escaping for handling spaces
results in very complex and fragile build files.
ADB - 2019/05/07
o Several Fortran examples print "^@" when displaying strings (for example,
names of the attributes). This happens because Fortran application
doesn't know the length of the strings passed from the C library.
EIP - 2015-01-11, HDFFR-1477
o CMake fails to set the full path to the install location on Windows:
The configuration file for examples, HDF4_Examples.cmake, must be updated
with the correct value by editing the file or using the INSTALLDIR option.
This issue is because of spaces in the path.
ADB - 2014/02/03
o CMake "make install" fails installing the tools:
Use CPack to create an install package.
ADB - 2014/02/03
o CMake does not install these man pages:
hdf.1, ncdump.1, ncgen.1
AKC/BMR - 2014/02/02
o On IBM PowerPC 64, hdftest fails when gcc 4.4.6 is used with -O3 optimization
level.
o When building on Linux/UNIX platforms, the szip shared library files must
be in the system library path. This can be done by adding a link to
the libsz.* files in the /usr/lib folder or by adding the library
location to the LD_LIBRARY_PATH environment variable.
Ex. export LD_LIBRARY_PATH=path_to_szip_lib:$LD_LIBRARY_PATH
Optionally, one can use the static szip library files by adding '-static'
to the CFLAGS environment variable.
o Existing data written by an HDF4 Library prior to HDF 4.2r2:
When a one-dimensional SDS and a dimension scale have
the same name, subsequent accesses to the dimension scale or to the
SDS might produce undesired results because the libraries could not
distinguish between the two objects. In the case of writing, data
might even be corrupted. For example, SDS data might be written to a
dimension variable or vice versa. (bugzilla #624)
HDF4 Library Releases 4.2r2 and later make a distinction between an SDS
and a dimension variable. However, as with older versions, these recent
versions are unable to detect such conflicts in files created by earlier
releases. It is therefore STRONGLY recommended to check for such name
duplication before working with data created with a pre-4.2r2 library.
The functions SDgetnumvars_byname and SDnametoindices are provided
to help detect such name conflicts and select the correct object to
access, respectively; see the HDF Reference Manual entries for
further details.
FB - 2009/01/26
BMR - revised 2011/06/24
o N-bit compression is not supported with Fortran APIs.
o Using both fill-value and compression on SD datasets does not work.
o When using PGI compilers, make sure that the JPEG library is also compiled
with a PGI C compiler; linking with a JPEG library built with gcc causes
JPEG library tests to fail. To bypass the problem:
x Set LIBS flag to $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
where $PGI_JPEG_INSTALL_DIR points to the installation directory
for the PGI-compiled JPEG library:
setenv LIBS $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
x Use the --with-jpeg=$PGI_JPEG_INSTALL_DIR configure flag to
configure with the PGI-compiled JPEG library:
./configure --with-jpeg=$PGI_JPEG_INSTALL_DIR --with-zlib....
o In order for the API SDgetdatasize to get the correct compressed size
of the data, the dataset needs to be closed (SDendaccess) or read
(SDreaddata) after being written and before SDgetdatasize is called.
BMR - 2008/11/22
%%%4.2.15%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
HDF version 4.2.15 released on 2020-02-12
====================================================
INTRODUCTION
This document describes the differences between this release and the
HDF 4.2.14 release. It is written for people who are familiar with
previous releases of HDF and wish to migrate to this version of HDF.
Note that the HDF4 documentation will be updated at the time of
each final release and can be found on the HDF4 support page at:
https://portal.hdfgroup.org/display/HDF4/HDF4
The official HDF4 releases can be obtained from:
https://portal.hdfgroup.org/display/support/Download+HDF4
If you have any questions or comments, please send them to the HDF Help Desk:
help@hdfgroup.org
CONTENTS
- New features and changes
-- Configuration
- Support for new platforms and compilers
- Bugs fixed since HDF 4.2.14
-- Configuration
-- Library
-- Utilities
- Documentation
- Platforms tested
- Known problems
New features and changes
========================
Configuration:
-------------
- Updated configuration for both build systems
Synchronized configuration variables between build systems to create
the same variables in h4config.h. Replaced the defines used in #ifdef
blocks with the appropriate H4_XXX defines. Updated the internal xdr
code to handle the different size of integers across platforms.
Also removed the restriction on building 64-bit platforms. Users on
macOS platforms (10.13 and newer) must build with the hdf4 xdr by
adding the following options during configuration:
autotools add "--enable-hdf4-xdr"
CMake add "HDF4_BUILD_XDR_LIB:BOOL=ON"
See INSTALL file for details on configure options.
(ADB - 2020/02/21)
- Update CMake for VS2019 support
CMake added support for VS2019 in version 3.15. Changes to the CMake
generator setting required changes to scripts. Also updated version
references in CMake files as necessary.
(ADB - 2019/11/18, HDFFR-1581)
- Update CMake tests to use FIXTURES
CMake test fixtures allow setup/cleanup tests and other dependency
requirements as properties for tests. This is more flexible for
modern CMake code.
(ADB - 2019/07/23, HDFFV-10529)
- Windows PDB files are always installed
There are build configuration or flag settings for Windows that may not
generate PDB files. If those files are not generated then the install
utility will fail because those PDB files are not found. An optional
variable, DISABLE_PDB_FILES, was added to not install PDB files.
(ADB - 2019/07/17, HDFFV-10424)
- Add mingw CMake support with a toolchain file
There has been a number of mingw issues that has been linked under
HDFFV-10845. It has been decided to implement the CMake cross-compiling
technique of toolchain files. We will use a linux platform with the mingw
compiler stack for testing. Only the C language is fully supported, and
the error tests are skipped. The C++ language works for static but shared
builds has a shared library issue with the mingw Standard Exception Handling
library, which is not available on Windows. Fortran has a common cross-compile
problem with the fortran configure tests.
(ADB - 2019/07/12, HDFFV-10845, HDFFV-10595)
- Windows PDB files are installed incorrectly
For static builds, the PDB files for windows should be installed next
to the static libraries in the lib folder. Also the debug versions of
libraries and PDB files are now correctly built using the default
CMAKE_DEBUG_POSTFIX setting.
(ADB - 2019/07/09, HDFFV-10581)
- Add option to build only shared libs
A request was made to prevent building static libraries and only build
shared. A new option was added to CMake, HDF4_ONLY_SHARED_LIBS, which will
skip building static libraries. Certain utility functions will build with
static libs but are not published. Tests are adjusted to use the correct
libraries depending on SHARED/STATIC settings.
(ADB - 2019/06/12, HDFFV-10805)
Support for new platforms and compilers
=======================================
- CMake added support for VS2019 in version 3.15. Updated scripts.
- macOS 10.13.6, Darwin 17.7.0 with Apple clang LLVM version 10.0.0
- macOS 10.14.6, Darwin 18.7.0 with Apple clang LLVM version 10.0.1
Bugs fixed since HDF 4.2.14
===========================
- netCDF test failed on multiple Mac
The netCDF test in the hdf4 library had failed either with segfault
or incorrect reading data on multiple versions of Mac machines, when
compiling with -O2. The segfault appeared to happen during the use
of various system XDR functions. In previous releases, -O0 level
optimization was used to avoid this problem. In this release, the
hdf4's internal xdr library has been updated to handle the different
size of integers across platforms, based on the newer tirpc library
code and netCDF xdr code.
(ADB/BMR/LRK - 2020/02/15, EED-439)
- Several memory leaks are fixed
There were memory leaks caused by the allocated xdr structure not released
and several missing to free allocated buffers in tests. These are now fixed.
(BMR - 2019/11/15)
Documentation
=============
Platforms tested
================
This version has been tested in the following platforms:
(Format:
uname -s, uname -r
uname -v, uname -p, uname -m)
Linux 2.6.32-754.11.1.el6.x86_64 gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)
#1 SMP, x86_64 GNU Fortran (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)
(mayll/platypus) icc (ICC) 17.0.0.098 Build 20160721
ifort (IFORT) 17.0.0.098 Build 20160721
pgcc and pgf90 17.10-0 64-bit target
on x86-64 Linux -tp nehalem
Linux, 3.10.0-327.18.2.el7.x86_64 GNU C (gcc) and Fortran (gfortran) compilers:
#1 SMP x86_64, GNU/Linux Version 4.8.5 20150623 (Red Hat 4.8.5-4)
jelly/moohan) Version 4.9.3, 5.3.0, 6.2.0, 7.1.0, 8.3.0
Intel(R) C (icc) and Fortran (ifort) compilers:
Version 17.0.0.098 Build 20160721
pgcc and pgf90 17.10-0 64-bit target
on x86-64 Linux -tp haswell
Linux, 2.6.32-573.18.1.el6.ppc64 GNU C (gcc) and Fortran (gfortran) compilers:
#1 SMP, ppc64 (ostrich) Version 4.4.7 20120313 (Red Hat 4.4.7-18)
Fortran (xlf) for Linux Version 15.1
SunOS 5.11 (32- and 64-bit) Sun C 5.12 SunOS_sparc 2011/11/16
11.1, sparc, sun4v (emu) Sun Fortran 95 8.6 SunOS_sparc 2011/11/16
Windows 7 x64 Visual Studio 2015 w/ Intel C, Fortran 2018 (cmake)
Windows 10 x64 Visual Studio 2015 w/ Intel C, Fortran 2018 (cmake)
Visual Studio 2017 w/ Intel C, Fortran 2019 (cmake)
Visual Studio 2019 w/ Intel C, Fortran 2019 (cmake)
Mac OS X 10.11.5, Darwin, 15.6.0 Apple clang version 7.3 from Xcode 7.3
x86_64 gfortran GNU Fortran (GCC) 5.2.0
(osx1011test) Intel icc and ifort version 15.0.3
macOS Sierra 10.12.5, Darwin, Apple clang version 8.1.0 from Xcode 8.3
16.6.0, x86_64 gfortran GNU Fortran (GCC) 7.4.0
(kite) Intel icc and ifort version 17.0.2
macOS 10.13.6, Darwin, Apple clang LLVM version 10.0.0
17.7.0, x86_64 gfortran GNU Fortran (GCC) 6.3.0
(bear) Intel icc and ifort version 19.0.4
macOS 10.14.6, Darwin, Apple clang LLVM version 10.0.1
18.7.0, x86_64 gfortran GNU Fortran (GCC) 6.3.0
(bobcat) Intel icc version 19.0.4
Fedora30 5.3.11-200.fc30.x86_64
#1 SMP x86_64 GNU/Linux gcc (GCC) 9.2.1 20190827 (Red Hat 9.2.1 20190827)
GNU Fortran (GCC) 9.2.1 20190827 (Red Hat 9.2.1 20190827)
(cmake and autotools)
Linux, 4.15.0-1051-aws
#53-Ubuntu SMP, x86_64, x86_64 gcc (Ubuntu 7.4.0-1ubuntu18.04.1) 7.4.0
GNU Fortran (Ubuntu 7.4.0-1ubuntu18.04.1) 7.4.0
(cmake and autotools)
Known problems
==============
o Builds with the autotools option --enable-hdf4-xdr fail on Solaris and
on IBM ppc64 with the xlc compiler. The option should not be used on
those platforms.
o CMake files do not behave correctly with paths containing spaces.
Do not use spaces in paths because the required escaping for handling spaces
results in very complex and fragile build files.
ADB - 2019/05/07
o Several Fortran examples print "^@" when displaying strings (for example,
names of the attributes). This happens because Fortran application
doesn't know the length of the strings passed from the C library.
EIP - 2015-01-11, HDFFR-1477
o CMake fails to set the full path to the install location on Windows:
The configuration file for examples, HDF4_Examples.cmake, must be updated
with the correct value by editing the file or using the INSTALLDIR option.
This issue is because of spaces in the path.
ADB - 2014/02/03
o CMake "make install" fails installing the tools:
Use CPack to create an install package.
ADB - 2014/02/03
o CMake does not install these man pages:
hdf.1, ncdump.1, ncgen.1
AKC/BMR - 2014/02/02
o For Mac OS X 10.7 Lion, 10.8 Mountain Lion, 10.9 Mavericks, 10.10 Yosemite,
and 10.11 El Capitan, when compiling with -O2, some xdr functions might cause
memory corruption. This happened for GCC, Intel and Clang compilers.
Currently, -O0 level optimization is used to avoid this problem.
(HDFFR-1318,1327,1358,1425) EIP - 2013/02/05, BMR - 2016/06/24
Update: This issue has been addressed in 4.2.15. BMR - 2020/02/24
o On IBM PowerPC 64, hdftest fails when gcc 4.4.6 is used with -O3 optimization
level.
o When building in AIX systems, if CC is xlc with -qlanglvl=ansi, configure
will fail when checking for the jpeglib.h header due to the duplicated
macro definition of HAVE_STDLIB_H. This is because some newer builds
of the jpeg library have HAVE_STDLIB_H defined in the jconfig.h header file.
Without the -qlanglvl=ansi, some older xlc versions (e.g., V7.0) still
fail, but newer xlc versions (e.g., V9.0) pass. AKC - 2010/02/17
o When building on Linux/UNIX platforms, the szip shared library files must
be in the system library path. This can be done by adding a link to
the libsz.* files in the /usr/lib folder or by adding the library
location to the LD_LIBRARY_PATH environment variable.
Ex. export LD_LIBRARY_PATH=path_to_szip_lib:$LD_LIBRARY_PATH
Optionally, one can use the static szip library files by adding '-static'
to the CFLAGS environment variable.
o Existing data written by an HDF4 Library prior to HDF 4.2r2:
When a one-dimensional SDS and a dimension scale have
the same name, subsequent accesses to the dimension scale or to the
SDS might produce undesired results because the libraries could not
distinguish between the two objects. In the case of writing, data
might even be corrupted. For example, SDS data might be written to a
dimension variable or vice versa. (bugzilla #624)
HDF4 Library Releases 4.2r2 and later make a distinction between an SDS
and a dimension variable. However, as with older versions, these recent
versions are unable to detect such conflicts in files created by earlier
releases. It is therefore STRONGLY recommended to check for such name
duplication before working with data created with a pre-4.2r2 library.
The functions SDgetnumvars_byname and SDnametoindices are provided
to help detect such name conflicts and select the correct object to
access, respectively; see the HDF Reference Manual entries for
further details.
FB - 2009/01/26
BMR - revised 2011/06/24
o N-bit compression is not supported with Fortran APIs.
o Using both fill-value and compression on SD datasets does not work.
o When using PGI compilers, make sure that the JPEG library is also compiled
with a PGI C compiler; linking with a JPEG library built with gcc causes
JPEG library tests to fail. To bypass the problem:
x Set LIBS flag to $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
where $PGI_JPEG_INSTALL_DIR points to the installation directory
for the PGI-compiled JPEG library:
setenv LIBS $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
x Use the --with-jpeg=$PGI_JPEG_INSTALL_DIR configure flag to
configure with the PGI-compiled JPEG library:
./configure --with-jpeg=$PGI_JPEG_INSTALL_DIR --with-zlib....
o In order for the API SDgetdatasize to get the correct compressed size
of the data, the dataset needs to be closed (SDendaccess) or read
(SDreaddata) after being written and before SDgetdatasize is called.
BMR - 2008/11/22
%%%4.2.14%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
HDF version 4.2.14 released on 2018-06-26
====================================================
INTRODUCTION
This document describes the differences between this release and the
HDF 4.2.13 release. It is written for people who are familiar with
previous releases of HDF and wish to migrate to this version of HDF.
Note that the HDF4 documentation will be updated at the time of
each final release and can be found on the HDF4 support page at:
https://portal.hdfgroup.org/display/HDF4/HDF4
The official HDF4 releases can be obtained from:
https://portal.hdfgroup.org/display/support/Download+HDF4
If you have any questions or comments, please send them to the HDF Help Desk:
help@hdfgroup.org
CONTENTS
- New features and changes
-- Configuration
- Support for new platforms and compilers
- Bugs fixed since HDF 4.2.13
-- Configuration
-- Library
-- Utilities
- Documentation
- Platforms tested
- Known problems
New features and changes
========================
Configuration:
-------------
- CMake
Refactor use of CMAKE_BUILD_TYPE for new variable, which understands
the type of generator in use.
Added new configuration macros to use new HDF_BUILD_TYPE variable. This
variable is set correctly for the type of generator being used for the build.
Changes follow from hdf5.
(ADB - 2018/01/08, HDFFV-10385, HDFFV-10296)
- XDR
glibc stopped installing rpc headers by default back in 2011:
versions 2.14 and 2.15 never install them, versions 2.16 and
higher require the configuration option --enable-obsolete-rpc.
Most distros still install the headers for backwards compatibility,
but Fedora 28 has now stopped support.
The preferred library is libtirpc. On Fedora 28, install the
libtirpc-devel package.
(ADB - 2018/05/29, HDFFR-1568)
Support for new platforms and compilers
=======================================
Bugs fixed since HDF 4.2.13
===========================
Configuration:
-------------
- CMake
Update CMake commands configuration.
A number of improvements were made to the CMake commands. Most
changes simplify usage or eliminate unused constructs. Also,
some changes support better cross-platform support. Changes
follow from hdf5.
(ADB - 2018/02/01, HDFFV-10398)
- CMake
Correct usage of CMAKE_BUILD_TYPE variable.
The use of the CMAKE_BUILD_TYPE is incorrect for multi-config
generators (Visual Studio and XCode) and is optional for single
config generators. Created a new macro to check
GLOBAL PROPERTY -> GENERATOR_IS_MULTI_CONFIG
Created two new HDF variable, HDF_BUILD_TYPE and HDF_CFG_BUILD_TYPE.
Defaults for these variables is "Release". Changes
follow from hdf5.
Library:
--------
- Removal of a memory leak
HTPendaccess was missing from HRPendaccess and resulting in a memory
leak. This is now fixed.
(BMR - 2018/06/18, HDFFR-1560)
- Fortran
Changed array data constructor to be g77 compatible. Updated
INSTALL notes about FFLAGS for g77.
(MSB - 2018/05/23, HDFFR-1553)
- Java
JNI functions called routine with wrong interface.
GRsetchunk, GRsetchunkcache changed from SD in hdfgrImp.c.
SDfileinfo changed from SD in hdfsdsImp.c.
(ADB - 2018/05/29, HDFFR-1565)
- Java
JNI functions used wrong constants.
MAX_VAR_DIMS and MAX_NC_NAME should have been H4_MAX_VAR_DIMS and H4_MAX_NC_NAME.
MAX_VAR_DIMS used in Java source is assigned the H4_MAX_VAR_DIMS value.
(ADB - 2018/05/29, HDFFR-1563)
Documentation
=============
- Various minor improvements are made to the User's Guide and Reference Manual.
(BMR - 2018/06/26)
Platforms tested
================
This version has been tested in the following platforms:
(Format:
uname -s, uname -r
uname -v, uname -p, uname -m)
Linux 2.6.32-573.22.1.el6.x86_64 gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)
#1 SMP, x86_64 GNU Fortran (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)
(mayll/platypus) icc (ICC) 17.0.0.098 Build 20160721
ifort (IFORT) 17.0.0.098 Build 20160721
pgcc and pgf90 17.10-0 64-bit target
on x86-64 Linux -tp nehalem
Linux, 3.10.0-327.10.1.el7.x86_64 gcc (GCC) 4.8.5 20150623 (Red Hat 4.8.5-4)
#1 SMP x86_64, GNU/Linux GNU Fortran (GCC) 4.8.5 20150623 (Red Hat 4.8.5-4)
(jelly/moohan) icc (ICC) 17.0.0.098 Build 20160721
ifort (IFORT) 17.0.0.098 Build 20160721
pgcc and pgf90 17.10-0 64-bit target
on x86-64 Linux -tp haswell
Linux, 2.6.32-573.18.1.el6.ppc64 gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-18)
#1 SMP, ppc64 (ostrich) (1) GNU Fortran (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)
(2) IBM XL Fortran for Linux, V15.1 (64-bit mode)
SunOS 5.11 (32- and 64-bit) Sun C 5.12 SunOS_sparc 2011/11/16
11.1, sparc, sun4v (emu) Sun Fortran 95 8.6 SunOS_sparc 2011/11/16
Windows 7 Visual Studio 2012 w/ Intel Fortran 15 (cmake)
Visual Studio 2013 w/ Intel Fortran 15 (cmake)
Visual Studio 2015 w/ Intel Fortran 16 (cmake)
Windows 7 x64 Visual Studio 2012 w/ Intel Fortran 15 (cmake)
Visual Studio 2013 w/ Intel Fortran 15 (cmake)
Visual Studio 2015 w/ Intel Fortran 16 (cmake)
Visual Studio 2015 w/ Intel C, Fortran 2017 (cmake)
Windows 10 Visual Studio 2015 w/ Intel Fortran 16 (cmake)
Cygwin(CYGWIN_NT-6.1 2.8.0(0.309/5/3)
gcc and gfortran compilers (GCC 5.4.0)
(cmake and autotools)
Windows 10 x64 Visual Studio 2015 w/ Intel Fortran 16 (cmake)
Mac OS X 10.10.5, Darwin, 14.5.0 Apple clang version 6.1 from Xcode 7.0
x86_64 gfortran GNU Fortran (GCC) 4.9.2
(osx1010dev) Intel icc and ifort version 15.0.3
Mac OS X 10.11.5, Darwin, 15.6.0 Apple clang version 7.3 from Xcode 7.3
x86_64 gfortran GNU Fortran (GCC) 5.2.0
(osx1010dev) Intel icc and ifort version 15.0.3
macOS Sierra 10.12.5, Darwin, Apple clang version 8.1.0 from Xcode 8.3
16.6.0, x86_64 gfortran GNU Fortran (GCC) 7.1.0
(kite) Intel icc and ifort version 17.0.2
Debian 8.6.0 3.16.0-4-amd64
#1 SMP Debian 3.16.43-2, x86_64 GNU/Linux
gcc (Debian 4.9.2-10) 4.9.2
GNU Fortran (Debian 4.9.2-10) 4.9.2
(cmake and autotools)
Fedora24 4.7.2-201.fc24.x86_64
#1 SMP x86_64 GNU/Linux gcc (GCC) 6.1.1 20160621 (Red Hat 6.1.1-3)
GNU Fortran (GCC) 6.1.1 20160621 (Red Hat 6.1.1-3)
(cmake and autotools)
Ubuntu 16.04.1 4.4.0-38-generic
#57-Ubuntu SMP x86_64 GNU/Linux gcc (Ubuntu 5.4.0-6ubuntu16.04.4) 5.4.0
GNU Fortran (Ubuntu 5.4.0-6ubuntu16.04.4) 5.4.0
(cmake and autotools)
Known problems
==============
o Several Fortran examples print "^@" when displaying strings (for example,
names of the attributes). This happens because Fortran application
doesn't know the length of the strings passed from the C library.
EIP - 2015-01-11, HDFFR-1477
o CMake fails to set the full path to the install location on Windows:
The configuration file for examples, HDF4_Examples.cmake, must be updated
with the correct value by editing the file or using the INSTALLDIR option.
This issue is because of spaces in the path.
ADB - 2014/02/03
o CMake "make install" fails installing the tools:
Use CPack to create an install package.
ADB - 2014/02/03
o CMake does not install these man pages:
hdf.1, ncdump.1, ncgen.1
AKC/BMR - 2014/02/02
o For Mac OS X 10.7 Lion, 10.8 Mountain Lion, 10.9 Mavericks, 10.10 Yosemite,
and 10.11 El Capitan, when compiling with -O2, some xdr functions might cause
memory corruption. This happened for GCC, Intel and Clang compilers.
Currently, -O0 level optimization is used to avoid this problem.
(HDFFR-1318,1327,1358,1425) EIP - 2013/02/05, BMR - 2016/06/24
o On IBM PowerPC 64, hdftest fails when gcc 4.4.6 is used with -O3 optimization
level.
o When building in AIX systems, if CC is xlc with -qlanglvl=ansi, configure
will fail when checking for the jpeglib.h header due to the duplicated
macro definition of HAVE_STDLIB_H. This is because some newer builds
of the jpeg library have HAVE_STDLIB_H defined in the jconfig.h header file.
Without the -qlanglvl=ansi, some older xlc versions (e.g., V7.0) still
fail, but newer xlc versions (e.g., V9.0) pass. AKC - 2010/02/17
o When building on Linux/UNIX platforms, the szip shared library files must
be in the system library path. This can be done by adding a link to
the libsz.* files in the /usr/lib folder or by adding the library
location to the LD_LIBRARY_PATH environment variable.
Ex. export LD_LIBRARY_PATH=path_to_szip_lib:$LD_LIBRARY_PATH
Optionally, one can use the static szip library files by adding '-static'
to the CFLAGS environment variable.
o Existing data written by an HDF4 Library prior to HDF 4.2r2:
When a one-dimensional SDS and a dimension scale have
the same name, subsequent accesses to the dimension scale or to the
SDS might produce undesired results because the libraries could not
distinguish between the two objects. In the case of writing, data
might even be corrupted. For example, SDS data might be written to a
dimension variable or vice versa. (bugzilla #624)
HDF4 Library Releases 4.2r2 and later make a distinction between an SDS
and a dimension variable. However, as with older versions, these recent
versions are unable to detect such conflicts in files created by earlier
releases. It is therefore STRONGLY recommended to check for such name
duplication before working with data created with a pre-4.2r2 library.
The functions SDgetnumvars_byname and SDnametoindices are provided
to help detect such name conflicts and select the correct object to
access, respectively; see the HDF Reference Manual entries for
further details.
FB - 2009/01/26
BMR - revised 2011/06/24
o N-bit compression is not supported with Fortran APIs.
o Using both fill-value and compression on SD datasets does not work.
o When using PGI compilers, make sure that the JPEG library is also compiled
with a PGI C compiler; linking with a JPEG library built with gcc causes
JPEG library tests to fail. To bypass the problem:
x Set LIBS flag to $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
where $PGI_JPEG_INSTALL_DIR points to the installation directory
for the PGI-compiled JPEG library:
setenv LIBS $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
x Use the --with-jpeg=$PGI_JPEG_INSTALL_DIR configure flag to
configure with the PGI-compiled JPEG library:
./configure --with-jpeg=$PGI_JPEG_INSTALL_DIR --with-zlib....
o In order for the API SDgetdatasize to get the correct compressed size
of the data, the dataset needs to be closed (SDendaccess) or read
(SDreaddata) after being written and before SDgetdatasize is called.
BMR - 2008/11/22
%%%4.2.13%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
HDF version 4.2.13 released on 2017-06-24
====================================================
INTRODUCTION
This document describes the differences between HDF 4.2.12 and HDF 4.2.13.
It is written for people who are familiar with previous releases of HDF
and wish to migrate to HDF 4.2.13.
The HDF 4.2.13 documentation can be found on the The HDF Group's website
at:
https://www.hdfgroup.org/release4/doc/
First-time HDF users are encouraged to read the HDF FAQ, which can be
reached from the HDF product home page:
https://support.hdfgroup.org/products/hdf4/
CONTENTS
- New features and changes
-- Configuration
- Support for new platforms and compilers
- Bugs fixed since HDF 4.2.12
-- Configuration
-- Library
-- Utilities
- Documentation
- Platforms tested
- Known problems
New features and changes
========================
Configuration
=============
- CMake
CMake minimum version is 3.2.2
Support for new platforms and compilers
=======================================
- Support for macOS Sierra 10.12.5 was added (LK - 2017/06/23, HDFFR-1558)
Bugs fixed since HDF 4.2.12
=========================
Library
=========
- Several memory leaks occurred in an SD API internal function. These leaks
are now removed.
(BMR - 2017/06/23, HDFFR-1534)
- Memory leaks occurred because memory returned by HDstrdup were not freed.
This is now fixed.
(BMR - 2017/06/23, HDFFR-1536)
Documentation
=============
- Minor improvements were made to the User's Guide, Reference Manual, and
Specification and Developer’s Guide.
(BMR - 2017/06/23)
Platforms tested
================
This version has been tested in the following platforms:
(Format:
uname -s, uname -r
uname -v, uname -p, uname -m)
Linux 2.6.32-573.22.1.el6.x86_64 gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)
#1 SMP, x86_64 GNU Fortran (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)
(mayll/platypus) icc (ICC) 15.0.3.187 Build 20150407
ifort (IFORT) 15.0.3.187 Build 20150407
pgcc and pgf90 15.7-0 64-bit target on x86-64 Linux -tp nehalem
Linux, 3.10.0-327.10.1.el7.x86_64 gcc (GCC) 4.8.5 20150623 (Red Hat 4.8.5-4)
#1 SMP x86_64, GNU/Linux GNU Fortran (GCC) 4.8.5 20150623 (Red Hat 4.8.5-4)
(kituo/moohan) icc (ICC) 15.0.3.187 Build 20150407
ifort (IFORT) 15.0.3.187 Build 20150407
Linux, 2.6.32-573.18.1.el6.ppc64 (1) GNU Fortran (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)
#1 SMP, ppc64 (ostrich) (2) IBM XL Fortran for Linux, V15.1 (64-bit mode)
SunOS 5.11 (32- and 64-bit) Sun C 5.12 SunOS_sparc 2011/11/16
11.1, sparc, sun4v (emu) Sun Fortran 95 8.6 SunOS_sparc 2011/11/16
Windows 7 Visual Studio 2012 w/ Intel Fortran 15 (cmake)
Visual Studio 2013 w/ Intel Fortran 15 (cmake)
Visual Studio 2015 w/ Intel Fortran 16 (cmake)
Windows 7 x64 Visual Studio 2012 w/ Intel Fortran 15 (cmake)
Visual Studio 2013 w/ Intel Fortran 15 (cmake)
Visual Studio 2015 w/ Intel Fortran 16 (cmake)
Visual Studio 2015 w/ Intel C, Fortran 2017 (cmake)
Windows 10 Visual Studio 2015 w/ Intel Fortran 16 (cmake)
Cygwin(CYGWIN_NT-6.1 2.8.0(0.309/5/3)
gcc and gfortran compilers (GCC 5.4.0)
(cmake and autotools)
Windows 10 x64 Visual Studio 2015 w/ Intel Fortran 16 (cmake)
Mac OS X 10.9.5, Darwin, 13.4.0 Apple clang version 6.0 from Xcode 6.2
x86_64 gfortran GNU Fortran (GCC) 4.9.2
(wren,quail) Intel icc and ifort Version 15.0.3
Mac OS X 10.10.5, Darwin, 14.5.0 Apple clang version 6.1 from Xcode 7.0
x86_64 gfortran GNU Fortran (GCC) 4.9.2
(osx1010dev) Intel icc and ifort version 15.0.3
Mac OS X 10.11.5, Darwin, 15.6.0 Apple clang version 7.3 from Xcode 7.3
x86_64 gfortran GNU Fortran (GCC) 5.2.0
(osx1010dev) Intel icc and ifort version 15.0.3
macOS Sierra 10.12.5, Darwin, Apple clang version 8.1.0 from Xcode 8.3
16.6.0, x86_64 gfortran GNU Fortran (GCC) 7.1.0
(kite) Intel icc and ifort version 17.0.2
Debian 8.6.0 3.16.0-4-amd64
#1 SMP Debian 3.16.43-2, x86_64 GNU/Linux
gcc (Debian 4.9.2-10) 4.9.2
GNU Fortran (Debian 4.9.2-10) 4.9.2
(cmake and autotools)
Fedora24 4.7.2-201.fc24.x86_64
#1 SMP x86_64 GNU/Linux gcc (GCC) 6.1.1 20160621 (Red Hat 6.1.1-3)
GNU Fortran (GCC) 6.1.1 20160621 (Red Hat 6.1.1-3)
(cmake and autotools)
SUSE Server 12 SP1 3.12.49-1
#1 SMP x86_64 GNU/Linux gcc (SUSE Linux) 4.8.5
GNU Fortran (SUSE Linux) 4.8.5
(cmake and autotools)
Ubuntu 14.04 4.4.0-81-generic
#104-Ubuntu SMP x86_64 GNU/Linux gcc (Ubuntu 5.4.0-6ubuntu16.04.4) 5.4.0
GNU Fortran (Ubuntu 5.4.0-6ubuntu16.04.4) 5.4.0
(cmake and autotools)
Known problems
==============
o Several Fortran examples print "^@" when displaying strings (for example,
names of the attributes). This happens because Fortran application
doesn't know the length of the strings passed from the C library.
EIP - 2015-01-11, HDFFR-1477
o CMake fails to set the full path to the install location on Windows:
The configuration file for examples, HDF4_Examples.cmake, must be updated
with the correct value by editing the file or using the INSTALLDIR option..
ADB - 2014/02/03
o CMake "make install" fails installing the tools:
Use CPack to create an install package.
ADB - 2014/02/03
o CMake does not install these man pages:
hdf.1, ncdump.1, ncgen.1
AKC/BMR - 2014/02/02
o For Mac OS X 10.7 Lion, 10.8 Mountain Lion, 10.9 Mavericks, 10.10 Yosemite,
and 10.11 El Capitan, when compiling with -O2, some xdr functions might cause
memory corruption. This happened for GCC, Intel and Clang compilers.
Currently, -O0 level optimization is used to avoid this problem.
(HDFFR-1318,1327,1358,1425) EIP - 2013/02/05, BMR - 2016/06/24
o On IBM PowerPC 64, hdftest fails when gcc 4.4.6 is used with -O3 optimization
level.
o When building in AIX systems, if CC is xlc with -qlanglvl=ansi, configure
will fail when checking for the jpeglib.h header due to the duplicated
macro definition of HAVE_STDLIB_H. This is because some newer builds
of the jpeg library have HAVE_STDLIB_H defined in the jconfig.h header file.
Without the -qlanglvl=ansi, some older xlc versions (e.g., V7.0) still
fail, but newer xlc versions (e.g., V9.0) pass. AKC - 2010/02/17
o When building on Linux/UNIX platforms, the szip shared library files must
be in the system library path. This can be done by adding a link to
the libsz.* files in the /usr/lib folder or by adding the library
location to the LD_LIBRARY_PATH environment variable.
Ex. export LD_LIBRARY_PATH=path_to_szip_lib:$LD_LIBRARY_PATH
Optionally, one can use the static szip library files by adding '-static'
to the CFLAGS environment variable.
o Existing data written by an HDF4 Library prior to HDF 4.2r2:
When a one-dimensional SDS and a dimension scale have
the same name, subsequent accesses to the dimension scale or to the
SDS might produce undesired results because the libraries could not
distinguish between the two objects. In the case of writing, data
might even be corrupted. For example, SDS data might be written to a
dimension variable or vice versa. (bugzilla #624)
HDF4 Library Releases 4.2r2 and later make a distinction between an SDS
and a dimension variable. However, as with older versions, these recent
versions are unable to detect such conflicts in files created by earlier
releases. It is therefore STRONGLY recommended to check for such name
duplication before working with data created with a pre-4.2r2 library.
The functions SDgetnumvars_byname and SDnametoindices are provided
to help detect such name conflicts and select the correct object to
access, respectively; see the HDF Reference Manual entries for
further details.
FB - 2009/01/26
BMR - revised 2011/06/24
o N-bit compression is not supported with Fortran APIs.
o Using both fill-value and compression on SD datasets does not work.
o When using PGI compilers, make sure that the JPEG library is also compiled
with a PGI C compiler; linking with a JPEG library built with gcc causes
JPEG library tests to fail. To bypass the problem:
x Set LIBS flag to $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
where $PGI_JPEG_INSTALL_DIR points to the installation directory
for the PGI-compiled JPEG library:
setenv LIBS $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
x Use the --with-jpeg=$PGI_JPEG_INSTALL_DIR configure flag to
configure with the PGI-compiled JPEG library:
./configure --with-jpeg=$PGI_JPEG_INSTALL_DIR --with-zlib....
o In order for the API SDgetdatasize to get the correct compressed size
of the data, the dataset needs to be closed (SDendaccess) or read
(SDreaddata) after being written and before SDgetdatasize is called.
BMR - 2008/11/22
%%%4.2.12%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
HDF version 4.2.12 released on 2016-06-29
====================================================
INTRODUCTION
This document describes the differences between HDF 4.2.11 and HDF 4.2.12.
It is written for people who are familiar with previous releases of HDF
and wish to migrate to HDF 4.2.12.
The HDF 4.2.11 documentation can be found on the The HDF Group's website
at:
https://www.hdfgroup.org/release4/doc/
First-time HDF users are encouraged to read the HDF FAQ, which can be
reached from the HDF product home page:
https://hdfgroup.org/products/hdf4/
If you have any questions or comments, please see the HDF Support page:
https://hdfgroup.org/services/support.html
CONTENTS
- New features and changes
-- Configuration
- Support for new platforms and compilers
- Bugs fixed since HDF 4.2.11
-- Configuration
-- Library
-- Utilities
- Documentation
- Platforms tested
- Known problems
New features and changes
========================
Configuration
=============
- None
Library
=========
- Behavior of HDstrdup changed
HDstrdup now checks the input string for NULL. (BMR, 2016/05/12)
- Behavior of SDsetexternalfile changed
Previously, when SDsetexternalfile was called more than once on a data
set, the library would repeatedly store the external file information in
the main file, at different offsets. SDsetexternalfile is now fixed to
cause no effect when the data set is already external. (BMR, 2016/05/30)
- Added new utility function HDisnetcdf64 for use in tools
HDisnetcdf64 returns TRUE(1) or FALSE(0) if a file is a netCDF 64-bit
file or not.
intn HDisnetcdf64(const char *filename)
(BMR, 2016/06/14)
Utilities
=========
- hdp: detection of netCDF 64-bit file
The utility hdp simply failed when the input file was a netCDF 64-bit
file. It now reports that it cannot read a netCDF 64-bit file then
exits or continue to the next input file.
(BMR, 2016/06/14)
Support for new platforms and compilers
=======================================
- Support for Mac OS X Yosemeti 10.10 added (AKC - 2015/03/04, HDFFR-1500)
- Support for Mac OS X El Capitan 10.11 added (AKC - 2015/11/18, HDFFR-1425)
(BMR, added for AKC, 2016/06/24)
Java Wrapper Library
--------------------
The Java HDF JNI library has been integrated into the HDF repository.
The configure option is "--enable-java", and the CMake option is
HDF4_BUILD_JAVA:BOOL=ON. The package hierarchy has changed from the
HDF 4 JNI, which was "ncsa.hdf.hdflib", to HDF 4.2.12,
"hdf.hdflib".
Bugs fixed since HDF 4.2.11
=========================
Configuration
=============
- Examples from mfhdf and hdf will now be installed according to $DESTDIR when
it is supplied. (LRK, 2016/06/29, HDFFR-1491)
Library
=========
- SDsetexternalfile on special elements
When the data element is already special, incorrect data length was used
for the element in subsequent calls to SDsetexternalfile, causing
failures sometimes. This is now fixed. (BMR, 2016/01/04, HDFFR-1516)
Utilities
=========
- None
Documentation
=============
- In addition to minor improvements in the contents, user documentation
have a new format to improve usability.
(BMR, 2016/06/24)
Platforms tested
================
This version has been tested in the following platforms:
(Format:
uname -s, uname -r
uname -v, uname -p, uname -m)
Linux 2.6.32-573.22.1.el6.x86_64 gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)
#1 SMP, x86_64 GNU Fortran (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)
(mayll/platypus) icc (ICC) 15.0.3.187 Build 20150407
ifort (IFORT) 15.0.3.187 Build 20150407
pgcc and pgf90 15.7-0 64-bit target on x86-64 Linux -tp nehalem
Linux, 3.10.0-327.10.1.el7.x86_64 gcc (GCC) 4.8.5 20150623 (Red Hat 4.8.5-4)
#1 SMP x86_64, GNU/Linux GNU Fortran (GCC) 4.8.5 20150623 (Red Hat 4.8.5-4)
(kituo/moohan) icc (ICC) 15.0.3.187 Build 20150407
ifort (IFORT) 15.0.3.187 Build 20150407
Linux, 2.6.32-573.18.1.el6.ppc64 (1) GNU Fortran (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)
#1 SMP, ppc64 (ostrich) (2) IBM XL Fortran for Linux, V15.1 (64-bit mode)
SunOS 5.11 (32- and 64-bit) Sun C 5.12 SunOS_sparc 2011/11/16
11.1, sparc, sun4v (emu) Sun Fortran 95 8.6 SunOS_sparc 2011/11/16
Windows 7 Visual Studio 2012 w/ Intel Fortran 15 (cmake)
Visual Studio 2013 w/ Intel Fortran 15 (cmake)
Visual Studio 2015 w/ Intel Fortran 16 (cmake)
Cygwin(CYGWIN_NT-6.1 2.2.1(0.289/5/3)
gcc(4.9.3) compiler and gfortran)
(cmake and autotools)
Windows 7 x64 Visual Studio 2012 w/ Intel Fortran 15 (cmake)
Visual Studio 2013 w/ Intel Fortran 15 (cmake)
Visual Studio 2015 w/ Intel Fortran 16 (cmake)
Windows 8.1 Visual Studio 2012 w/ Intel Fortran 15 (cmake)
Visual Studio 2013 w/ Intel Fortran 15 (cmake)
Windows 8.1 x64 Visual Studio 2012 w/ Intel Fortran 15 (cmake)
Visual Studio 2013 w/ Intel Fortran 15 (cmake)
Mac OS X 10.8.5, Darwin, 12.6.0 Apple clang version 5.1 from Xcode 5.1
12.6.0, x86_64 gfortran GNU Fortran (GCC) 4.8.2
(swallow,kite) Intel icc and ifort Version 15.0.3
Mac OS X 10.9.5, Darwin, 13.4.0 Apple clang version 6.0 from Xcode 6.2
13.4.0, x86_64 gfortran GNU Fortran (GCC) 4.9.2
(wren,quail) Intel icc and ifort Version 15.0.3
Mac OS X 10.10.5, Darwin, 14.5.0 Apple clang version 6.0 from Xcode 7.0
14.5.0, x86_64 666666 gfortran GNU Fortran (GCC) 4.9.2
(osx1010dev) Intel icc and ifort version 15.0.3
Mac OS X 10.11.5, Darwin, 15.4.0 Apple clang version 7.3 from Xcode 7.3
15.5.0, x86_64 666666 gfortran GNU Fortran (GCC) 5.2.0
(osx1010dev) Intel icc and ifort version 15.0.3
Debian7.5.0 3.2.0-4-amd64
#1 SMP Debian 3.2.51-1, x86_64 GNU/Linux
gcc (Debian 4.7.2-5) 4.7.2
GNU Fortran (Debian 4.7.2-5) 4.7.2
(cmake and autotools)
Fedora20 3.15.3-200.fc20.x86_64
#1 SMP x86_64 GNU/Linux gcc (GCC) 4.8.3 20140624 (Red Hat 4.8.3-1)
GNU Fortran (GCC) 4.8.3 20140624 (Red Hat 4.8.3-1)
(cmake and autotools)
SUSE 13.1 3.11.10-17-desktop
#1 SMP PREEMPT x86_64 GNU/Linux gcc (SUSE Linux) 4.8.1
GNU Fortran (SUSE Linux) 4.8.1
(cmake and autotools)
Ubuntu 14.04 3.13.0-35-generic
#62-Ubuntu SMP x86_64 GNU/Linux gcc (Ubuntu/Linaro 4.9.1-0ubuntu1) 4.9.1
GNU Fortran (Ubuntu/Linaro 4.9.1-0ubuntu1) 4.9.1
(cmake and autotools)
Known problems
==============
o Several Fortran examples print "^@" when displaying strings (for example,
names of the attributes). This happens because Fortran application
doesn't know the length of the strings passed from the C library.
EIP - 2015-01-11, HDFFR-1477
o CMake builds in Windows uses the same pre-generated ncgen*.[ch] files from
the yacc/lex input files. The generated file, ncgenyy.c, uses the <unistd.h>
header file that Windows does not support. This must be blocked out in
order for Windows to use it.
AKC 2014-02-03, HDFFR-1424
o CMake "make install" fails installing the tools:
Use CPack to create an install package.
ADB - 2014/02/03
o CMake does not install these man pages:
hdf.1, ncdump.1, ncgen.1
AKC/BMR - 2014/02/02
o For Mac OS X 10.7 Lion, 10.8 Mountain Lion, 10.9 Mavericks, 10.10 Yosemite,
and 10.11 El Capitan, when compiling with -O2, some xdr functions might cause
memory corruption. This happened for GCC, Intel and Clang compilers.
Currently, -O0 level optimization is used to avoid this problem.
(HDFFR-1318,1327,1358,1425) EIP - 2013/02/05, BMR - 2016/06/24
o On IBM PowerPC 64, hdftest fails when gcc 4.4.6 is used with -O3 optimization
level.
o When building in AIX systems, if CC is xlc with -qlanglvl=ansi, configure
will fail when checking for the jpeglib.h header due to the duplicated
macro definition of HAVE_STDLIB_H. This is because some newer builds
of the jpeg library have HAVE_STDLIB_H defined in the jconfig.h header file.
Without the -qlanglvl=ansi, some older xlc versions (e.g., V7.0) still
fail, but newer xlc versions (e.g., V9.0) pass. AKC - 2010/02/17
o When building on Linux/UNIX platforms, the szip shared library files must
be in the system library path. This can be done by adding a link to
the libsz.* files in the /usr/lib folder or by adding the library
location to the LD_LIBRARY_PATH environment variable.
Ex. export LD_LIBRARY_PATH=path_to_szip_lib:$LD_LIBRARY_PATH
Optionally, one can use the static szip library files by adding '-static'
to the CFLAGS environment variable.
o Existing data written by an HDF4 Library prior to HDF 4.2r2:
When a one-dimensional SDS and a dimension scale have
the same name, subsequent accesses to the dimension scale or to the
SDS might produce undesired results because the libraries could not
distinguish between the two objects. In the case of writing, data
might even be corrupted. For example, SDS data might be written to a
dimension variable or vice versa. (bugzilla #624)
HDF4 Library Releases 4.2r2 and later make a distinction between an SDS
and a dimension variable. However, as with older versions, these recent
versions are unable to detect such conflicts in files created by earlier
releases. It is therefore STRONGLY recommended to check for such name
duplication before working with data created with a pre-4.2r2 library.
The functions SDgetnumvars_byname and SDnametoindices are provided
to help detect such name conflicts and select the correct object to
access, respectively; see the HDF Reference Manual entries for
further details.
FB - 2009/01/26
BMR - revised 2011/06/24
o N-bit compression is not supported with Fortran APIs.
o Using both fill-value and compression on SD datasets does not work.
o When using PGI compilers, make sure that the JPEG library is also compiled
with a PGI C compiler; linking with a JPEG library built with gcc causes
JPEG library tests to fail. To bypass the problem:
x Set LIBS flag to $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
where $PGI_JPEG_INSTALL_DIR points to the installation directory
for the PGI-compiled JPEG library:
setenv LIBS $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
x Use the --with-jpeg=$PGI_JPEG_INSTALL_DIR configure flag to
configure with the PGI-compiled JPEG library:
./configure --with-jpeg=$PGI_JPEG_INSTALL_DIR --with-zlib....
o In order for the API SDgetdatasize to get the correct compressed size
of the data, the dataset needs to be closed (SDendaccess) or read
(SDreaddata) after being written and before SDgetdatasize is called.
BMR - 2008/11/22
%%%4.2.11%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
HDF version 4.2.11 released on 2015-02-09
==============================================
INTRODUCTION
This document describes the differences between HDF 4.2.10 and HDF 4.2.11.
It is written for people who are familiar with previous releases of HDF
and wish to migrate to HDF 4.2.11.
The HDF 4.2.11 documentation can be found on the The HDF Group's website
at:
http://www.hdfgroup.org/release4/doc/
First-time HDF users are encouraged to read the HDF FAQ, which can be
reached from the HDF product home page:
http://hdfgroup.org/products/hdf4/
If you have any questions or comments, please see the HDF Support page:
http://hdfgroup.org/services/support.html
CONTENTS
- New features and changes
-- Configuration
- Support for new platforms and compilers
- Bugs fixed since HDF 4.2.10
-- Configuration
-- Library
-- Utilities
- Documentation
- Platforms tested
- Known problems
New features and changes
========================
Configuration
=============
- None
Support for new platforms and compilers
=======================================
- None
Bugs fixed since HDF 4.2.10
=========================
Configuration
=============
- Windows installer incorrect display of PATH environment variable.
In the Windows installer, the dialog box where the user can elect to
add the product's bin path to the %PATH% environment variable displayed
an incorrect path. This path was missing the C:\Program Files part
and used the POSIX file separator '/' before the bin (<path>/bin,
instead of <path>\bin).
The dialog box text was changed to simply say that the product's bin
path would be added instead of explicitly displaying the path.
This is in line with most installers. The reason for not fixing the
displayed path instead is that it is difficult to pass the correct
path from CPack to the NSIS installer for display.
Note that this was never a code issue - it was just a display
problem. The installer always did the right thing when updating the
environment variable.
(DER - 2014/11/14, HDFFV-9016)
Library
=========
- Warning "array subscript is below array bounds"
Applied user's patch to remove the warning.
(BMR 2014/06/02, HDFFR-1379)
Utilities
=========
- Detection of read failure in ncdump
Previously, ncdump did not detect failure from ncvarget because the
returned value from ncvarget was not checked, and the calling function
simply returned 0.
The error code ERR_READFAIL (-2) is added to ncdump only to indicate this
failure within ncdump, which will display this message:
"Reading failed for variable <Variable name>, the data is possibly corrupted."
(BMR 2015/01/21, HDFFR-1468)
- Improvement of the ncgen's usage statement.
Previously, ncgen's usage looked like this:
ncgen: -: Usage: ncgen [-V] [ -b ] [ -c ] [ -f ] [ -o outfile] [ file... ]
More details are added to the usage to improve clarity. Now, it is more
clear, and consistent with ncdump, like this:
Usage: ncgen [-V] [ -b ] [ -c ] [ -f ] [ -o outfile] [ file ... ]
[-V] Display version of the HDF4 library and exit
[-b] For binary netCDF output, '.nc' extension
[-c] For C output
[-f] For Fortran output
[-o <outfile>] Explicitly specify output file name
(BMR 2015/01/19, HDFFR-1459)
- Output of hrepack containing an unnecessary vgroup of class RIG0.0
When the input file did not have any GR elements, hrepack still opened and
closed the output file using the GR API, which caused the RIG0.0 vgroup to
be written to the output file.
Hrepack now skips accessing the output file using GR API, when the input
file doesn't have any images and any GR attributes.
(BMR 2015/01/18, HDFFR-1428)
- Compliance with Fedora standard regarding printf/fprintf statements
Users sent patches for the problem where the format string is missing from
the printf/fprintf statements. This is in compliance with Fedora standard.
For more information, see
https://fedoraproject.org/wiki/Format-Security-FAQ.
In the context where this problem occurred, the benefit of using puts/fputs
over printf/fprintf is insignificant. Thus, the fix was adding "%s" to
those printf/fprintf statements that don't have the format string instead
of switching to puts/fputs.
(BMR 2014/12/16, HDFFR-1423 and HDFFR-1475)
- Failure of hdp on some hdfeos generated files
Attribute vdatas created by hdfeos API have the field named "AttrValues".
The utility functions Vattrhdfsize and VSattrhdfsize, in hdp.c, used
ATTR_FIELD_NAME ("VALUES") to verify that a vdata is storing an attribute,
causing failure on some hdfeos generated files. In addition, when this
failure occurred, the calling function tried to free allocated resources
prematurely.
The check against ATTR_FIELD_NAME and the premature resource deallocation
are removed.
(BMR 2014/12/08, HDFFR-1471)
- nclong versus long in tests
Applied the user's patch to remove a test failure.
(BMR 2014/10/21, HDFFR-1378)
Documentation
=============
- Updated Reference Manual and User's Guide
The documents were updated to contain information of the changes to
the tools. In addition, various improvements were applied.
(BMR 2015/2/04)
Platforms tested
================
This version has been tested in the following platforms:
Linux 2.6.32-358.18.1 gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)
.el6.ppc64 #1 GNU Fortran (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)
SMP ppc64 GNU/Linux IBM XL Fortran for Linux, V15.1 (64-bit mode)
(ostrich)
Linux 2.6.18-308.13.1.el5 #1 gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-55)
SMP i686 i386 GNU Fortran (GCC) 4.1.2 20080704
(jam) (Red Hat 4.1.2-55)
pgcc and pgf90 14.10-0 32-bit target
on x86 Linux -tp penryn
Intel(R) C Compiler, Version 15.0.1 20141022
Intel(R) Fortran Compiler, Version 15.0.1
Linux 2.6.18-398.el5 #1 gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-55)
SMP x86_64 GNU/Linux GNU Fortran (GCC) 4.1.2 20080704
(koala) (Red Hat 4.1.2-55)
icc (ICC) 15.0.1 20141022
ifort (IFORT) 15.0.1 20141022
Linux 2.6.32-504.1.3.el6 gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)
#1 SMP x86_64 GNU/Linux GNU Fortran (GCC) 4.4.7 20120313
(platypus) (Red Hat 4.4.7-11)
icc (ICC) 15.0.1 20141022
ifort (IFORT) 15.0.1 20141022
pgcc and pgf90 14.10-0 64-bit target
on x86-64 Linux -tp nehalem
Linux 3.10.0-123.8.1.el7 gcc (GCC) 4.8.2 20140120 (Red Hat 4.8.2-16)
#1 SMP x86_64 GNU/Linux GNU Fortran (GCC) 4.8.2 20140120
(aws ec2 CentOS 7 image) (Red Hat 4.8.2-16)
SunOS 5.11 32- and 64-bit Sun C 5.12 SunOS_sparc 2011/11/16
(emu) (see "Known problem" section)
Sun Fortran 95 8.6 SunOS_sparc 2011/11/16
Windows 7 Visual Studio 2008 (cmake)
Visual Studio 2010 w/ Intel Fortran 14 (cmake)
Visual Studio 2012 w/ Intel Fortran 14 (cmake)
Visual Studio 2013 w/ Intel Fortran 14 (cmake)
Cygwin(CYGWIN_NT-6.1 1.7.32(0.274/5/3) gcc(4.8.3) compiler and gfortran)
(cmake and autotools)
Windows 7 x64 Visual Studio 2008 (cmake)
Visual Studio 2010 w/ Intel Fortran 14 (cmake)
Visual Studio 2012 w/ Intel Fortran 14 (cmake)
Visual Studio 2013 w/ Intel Fortran 14 (cmake)
Windows 8.1 Visual Studio 2012 w/ Intel Fortran 14 (cmake)
Visual Studio 2013 w/ Intel Fortran 14 (cmake)
Windows 8.1 x64 Visual Studio 2012 w/ Intel Fortran 14 (cmake)
Visual Studio 2013 w/ Intel Fortran 14 (cmake)
Mac OS X 10.7.5 Apple clang version 3.0 from Xcode 4.6.1
Darwin 11.4.2 gfortran GNU Fortran (GCC) 4.8.2
(duck) icc and ifort Version 13.0.3 20130606
Mac OS X 10.8.5 Apple clang version 5.1 from Xcode 5.1
Darwin 12.5.0 gfortran GNU Fortran (GCC) 4.8.2
(swallow,kite) icc and ifort Version 14.0.4 20140805
Mac OS X 10.9.5 Apple clang version 6.0 from Xcode 6.0.1
Darwin 13.4.0 gfortran GNU Fortran (GCC) 4.8.2
(wren,quail) icc and ifort Version 15.0.1 20141022
Debian7.5.0 3.2.0-4-amd64 #1 SMP Debian 3.2.51-1 x86_64 GNU/Linux
gcc (Debian 4.7.2-5) 4.7.2
GNU Fortran (Debian 4.7.2-5) 4.7.2
(cmake and autotools)
Fedora20 3.15.3-200.fc20.x86_64 #1 SMP x86_64 x86_64 x86_64 GNU/Linux
gcc (GCC) 4.8.3 20140624 (Red Hat 4.8.3-1)
GNU Fortran (GCC) 4.8.3 20140624 (Red Hat 4.8.3-1)
(cmake and autotools)
SUSE 13.1 3.11.10-17-desktop #1 SMP PREEMPT x86_64 x86_64 x86_64 GNU/Linux
gcc (SUSE Linux) 4.8.1
GNU Fortran (SUSE Linux) 4.8.1
(cmake and autotools)
Ubuntu 14.04 3.13.0-35-generic #62-Ubuntu SMP x86_64 GNU/Linux
gcc (Ubuntu/Linaro 4.9.1-0ubuntu1) 4.9.1
GNU Fortran (Ubuntu/Linaro 4.9.1-0ubuntu1) 4.9.1
(cmake and autotools)
Known problems
==============
o Several Fortran examples print "^@" when displaying strings (for example,
names of the attributes). This happens because Fortran application
doesn't know the length of the strings passed from the C library.
EIP - 2015-01-11, HDFFR-1477
o CMake builds in Windows uses the same pre-generated ncgen*.[ch] files from
the yacc/lex input files. The generated file, ncgenyy.c, uses the <unistd.h>
header file that Windows does not support. This must be blocked out in
order for Windows to use it.
AKC 2014-02-03, HDFFR-1424
o CMake "make install" fails installing the tools:
Use CPack to create an install package.
ADB - 2014/02/03
o CMake does not install these man pages:
hdf.1, ncdump.1, ncgen.1
AKC/BMR - 2014/02/02
o For Mac OS X 10.7 Lion and on 10.8 Mountain Lion, several tests fail with
GCC, Intel and Clang compilers. Currently, this situation is detected and
-O0 level optimization is used.
(HDFFR-1318,1358) EIP - 2013/02/05
o On IBM PowerPC 64, hdftest fails when gcc 4.4.6 is used with -O3 optimization
level.
o When building in AIX systems, if CC is xlc with -qlanglvl=ansi, configure
will fail when checking for the jpeglib.h header due to the duplicated
macro definition of HAVE_STDLIB_H. This is because some newer builds
of the jpeg library have HAVE_STDLIB_H defined in the jconfig.h header file.
Without the -qlanglvl=ansi, some older xlc versions (e.g., V7.0) still
fail, but newer xlc versions (e.g., V9.0) pass. AKC - 2010/02/17
o When building on Linux/UNIX platforms, the szip shared library files must
be in the system library path. This can be done by adding a link to
the libsz.* files in the /usr/lib folder or by adding the library
location to the LD_LIBRARY_PATH environment variable.
Ex. export LD_LIBRARY_PATH=path_to_szip_lib:$LD_LIBRARY_PATH
Optionally, one can use the static szip library files by adding '-static'
to the CFLAGS environment variable.
o Existing data written by an HDF4 Library prior to HDF 4.2r2:
When a one-dimensional SDS and a dimension scale have
the same name, subsequent accesses to the dimension scale or to the
SDS might produce undesired results because the libraries could not
distinguish between the two objects. In the case of writing, data
might even be corrupted. For example, SDS data might be written to a
dimension variable or vice versa. (bugzilla #624)
HDF4 Library Releases 4.2r2 and later make a distinction between an SDS
and a dimension variable. However, as with older versions, these recent
versions are unable to detect such conflicts in files created by earlier
releases. It is therefore STRONGLY recommended to check for such name
duplication before working with data created with a pre-4.2r2 library.
The functions SDgetnumvars_byname and SDnametoindices are provided
to help detect such name conflicts and select the correct object to
access, respectively; see the HDF Reference Manual entries for
further details.
FB - 2009/01/26
BMR - revised 2011/06/24
o N-bit compression is not supported with Fortran APIs.
o Using both fill-value and compression on SD datasets does not work.
o When using PGI compilers, make sure that the JPEG library is also compiled
with a PGI C compiler; linking with a JPEG library built with gcc causes
JPEG library tests to fail. To bypass the problem:
x Set LIBS flag to $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
where $PGI_JPEG_INSTALL_DIR points to the installation directory
for the PGI-compiled JPEG library:
setenv LIBS $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
x Use the --with-jpeg=$PGI_JPEG_INSTALL_DIR configure flag to
configure with the PGI-compiled JPEG library:
./configure --with-jpeg=$PGI_JPEG_INSTALL_DIR --with-zlib....
o In order for the API SDgetdatasize to get the correct compressed size
of the data, the dataset needs to be closed (SDendaccess) or read
(SDreaddata) after being written and before SDgetdatasize is called.
BMR - 2008/11/22
%%%4.2.10%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
HDF version 4.2.10 released on 2014-02-09
==============================================
INTRODUCTION
This document describes the differences between HDF 4.2.9 and HDF 4.2.10.
It is written for people who are familiar with previous releases of HDF
and wish to migrate to HDF 4.2.10.
The HDF 4.2.10 documentation can be found on the The HDF Group's website
at:
http://www.hdfgroup.org/doc.html
Previous versions of the documentation are available from the FTP server:
ftp://ftp.hdfgroup.org/HDF/Documentation/
First-time HDF users are encouraged to read the HDF FAQ, which can be
reached from the HDF product home page:
http://hdfgroup.org/products/hdf4/
If you have any questions or comments, please see the HDF Support page:
http://hdfgroup.org/services/support.html
CONTENTS
- New features and changes
-- Configuration
- Support for new platforms and compilers
- Bugs fixed since HDF 4.2.9
-- Configuration
-- Library
-- Utilities
- Documentation
- Platforms tested
- Known problems
New features and changes
========================
Configuration
=============
CMake - Added support to create dmg bundles on Mac.
(ADB 2013/9/12)
CMake - Added support to use Windows /MT option.
(ADB 2013/6/10)
Support for new platforms and compilers
=======================================
- Visual Studio 2012 w/ Intel Fortran 13 on Windows 7 and Windows 8
- Mac OS X Mavericks with clang and gfortran
Bugs fixed since HDF 4.2.9
=========================
Configuration
=============
- Removed the requirement of yacc/lex like tools. The ncgenXXX.* files
generated files from yacc and lex input files are pre-created in the
source code to build the ncgen tool. The msoft*.[ch] files were for
Windows build but was out of dated. Cmake uses the pre-created files
instead. See known problem below. (AKC 2014/02/02 HDFFR-1419)
- Removed old Macintosh platform codes that are not used any more.
(AKC 2014/01/21 HDFFR-1340)
- Changed Mac platforms to use the Apple supported clang compiler as the
default C compiler. (AKC 2014/01/15 HDFFR-1318)
- Removed the following individual platform specific files and have them to
be produced by configure using corresponding *.in files.
mfhdf/libsrc/config/netcdf-XXX.h by mfhdf/libsrc/netcdf.h.in
mfhdf/fortran/config/ftest-XXX.f by mfhdf/fortran/ftest.f.in
mfhdf/fortran/config/jackets-XXX.c by mfhdf/fortran/jackets.c.in
mfhdf/fortran/config/netcdf-XXX.inc by mfhdf/fortran/netcdf.inc.in
(AKC 2013/12/31 HDFFR-1320/476)
- The following platforms are old and no longer available. Removed their
support code from the configure files:
alpha, convex, dec, fujivp, hpux, ia64, irix32, irix4, irix5, irix6, mac,
solarisx86, sun, t3e, unicos. (AKC 2013/12/26 HDFFR-1320)
- Removed -Xc (strict ansi standard) from the default CFLAGS of Solaris
since the latest Sun Compiler version 5.11 and 5.12 have a conflict with
the system header file. Since the current versions of C compiler should be
at least ANSI (aka C89) compliant, the removal of -Xc should be safe. This
also fixes a previous known problem of needing to use -xc99 to build HDF4.
(AKC 2013/12/20 HDFFR-1361)
- CMake - Changed name of TGZ_PATH to TGZPATH.
(ADB 2013/9/12)
- CMake - Removed extra flag POSIX_SOURCE as it caused failures on Apple Mac
builds. (ADB 2013/8/7)
Library
=========
- SDsetblocksize and VSsetblocksize would not change the block size if
the sds/vdata did not use linked-block before it was closed. The
problem is now fixed. (BMR 2013/1/15 - HDFFR-1357)
- Patches from user are applied to the C test to correct an overflow variable
and to the Fortran source for some missing declarations.
(BMR/EP 2014/1/15 - HDFFR-1367)
- Examples GR_write_chunks.c and GR_read_chunks.c were added.
(BMR 2014/12/30 - HDFFR-1402)
Utilities
=========
- ncdump displayed garbage in place of fill-values when a variable had
unlimited dimension and had been written with less number of records
than the largest number of records in the file. This is now fixed.
(BMR 2014/12/16 - HDFFR-1390)
Documentation
=============
- None
Platforms tested
================
This version has been tested in the following platforms:
Linux 2.6.32-358.18.1 gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-3)
.el6.ppc64 #1 GNU Fortran (GCC) 4.4.7 20120313 (Red Hat 4.4.7-3)
SMP ppc64 GNU/Linux IBM XL Fortran for Linux, V13.1 (64-bit mode)
(ostrich)
Linux 2.6.18-308.13.1.el5 #1 gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-52)
SMP i686 i386 GNU Fortran (GCC) 4.1.2 20080704
(jam) (Red Hat 4.1.2-52)
pgcc and pgf90 13.7-0 32-bit target
on x86 Linux -tp penryn
Intel(R) C Compiler, Version 13.1.3 20130607
Intel(R) Fortran Compiler, Version 13.1.3
Linux 2.6.18-308.24.1.el5 #1 gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-54)
SMP x86_64 GNU/Linux GNU Fortran (GCC) 4.1.2 20080704
(koala) (Red Hat 4.1.2-54)
icc (ICC) 13.1.3 20130607
ifort (IFORT) 13.1.3 20130607
pgcc and pgf90 13.7-0 64-bit target
on x86-64 Linux -tp nehalem
Linux 2.6.32-431.el6.x86_64 gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-4)
#1 SMP x86_64 GNU/Linux GNU Fortran (GCC) 4.4.7 20120313
(platypus) (Red Hat 4.4.7-4)
icc (ICC) 13.1.3 20130607
ifort (IFORT) 13.1.3 20130607
SunOS 5.11 32- and 64-bit Sun C 5.12 SunOS_sparc 2011/11/16
(emu) (see "Known problem" section)
Sun Fortran 95 8.6 SunOS_sparc 2011/11/16
Windows 7 Visual Studio 2008 w/ Intel Fortran 11.1 (cmake)
Visual Studio 2010 w/ Intel Fortran 12 (cmake)
Visual Studio 2012 w/ Intel Fortran 13 (cmake)
Cygwin(CYGWIN_NT-6.1 1.7.25(0.270/5/3) gcc(4.7.3) compiler and gfortran)
(cmake and autotools)
Windows 7 x64 Visual Studio 2008 w/ Intel Fortran 11.1 (cmake)
Visual Studio 2010 w/ Intel Fortran 12 (cmake)
Visual Studio 2012 w/ Intel Fortran 13 (cmake)
Windows 8 Visual Studio 2012 w/ Intel Fortran 13 (cmake)
Windows 8 x64 Visual Studio 2012 w/ Intel Fortran 13 (cmake)
Mac OS X Intel 10.6.8 Apple clang version 1.7 from Xcode 3.2.6
Darwin 10.8.0 gfortran GNU Fortran (GCC) 4.6.2
(fred) icc and ifort Version 12.1.6 20120928
Mac OS X 10.7.5 Apple clang version 3.0 from Xcode 4.6.1
Darwin 11.4.2 gfortran GNU Fortran (GCC) 4.6.2
(duck) icc and ifort Version 13.0.3 20130606
Mac OS X 10.8.5 Apple clang version 4.2 from Xcode 4.6.1
Darwin 12.2.0 gfortran GNU Fortran (GCC) 4.6.2
(wren) icc and ifort Version 13.0.3 20130606
Mac OS X 10.8.5 Apple clang version 5.0 from Xcode 5.0.2
Darwin 12.2.0 gfortran GNU Fortran (GCC) 4.6.2
(swallow,kite) icc and ifort Version 14.0.1 20131010
Mac OS X 10.9.1 Apple LLVM version 5.0 (clang-500.2.79)
Darwin 13.0.0 (based on LLVM 3.3svn)
gfortran GNU Fortran (GCC) 4.6.2
Debian7.2.0 3.2.0-4-amd64 #1 SMP Debian 3.2.51-1 x86_64 GNU/Linux
gcc (Debian 4.7.2-5) 4.7.2
GNU Fortran (Debian 4.7.2-5) 4.7.2
(cmake and autotools)
Fedora20 3.11.10-301.fc20.x86_64 #1 SMP x86_64 x86_64 x86_64 GNU/Linux
gcc (GCC) 4.8.2 20131212 (Red Hat 4.8.2-7)
GNU Fortran (GCC) 4.8.2 20130603 (Red Hat 4.8.2-7)
(cmake and autotools)
SUSE 13.1 3.11.6-4-desktop #1 SMP PREEMPT x86_64 x86_64 x86_64 GNU/Linux
gcc (SUSE Linux) 4.8.1
GNU Fortran (SUSE Linux) 4.8.1
(cmake and autotools)
Ubuntu 13.10 3.11.0-13-generic #20-Ubuntu SMP x86_64 GNU/Linux
gcc (Ubuntu/Linaro 4.8.1-10ubuntu8) 4.8.1
GNU Fortran (Ubuntu/Linaro 4.8.1-10ubuntu8) 4.8.1
(cmake and autotools)
Known problems
==============
o CMake builds in Windows uses the same pre-generated ncgen*.[ch] files from
the yacc/lex input files. The generated file, ncgenyy.c, uses the <unistd.h>
header file that Windows does not support. This must be blocked out in
order for Windows to use it. (AKC 2014-02-03 HDFFR-1424).
o CMake "make install" fails installing the tools:
Use CPack to create an install package.
ADB - 2014/02/03
o CMake does not install these man pages:
hdf.1, ncdump.1, ncgen.1
AKC/BMR - 2014/02/02
o For Mac OS X 10.7 Lion and on 10.8 Mountain Lion, several tests fail with
GCC, Intel and Clang compilers. Currently, this situation is detected and
-O0 level optimization is used. We will work on the issue for the next
release. (HDFFR-1318,1358) EIP - 2013/02/05
o On IBM PowerPC 64, hdftest fails when gcc 4.4.6 is used with -O3 optimization
level.
o When building in AIX systems, if CC is xlc with -qlanglvl=ansi, configure
will fail when checking for the jpeglib.h header due to the duplicated
macro definition of HAVE_STDLIB_H. This is because some newer builds
of the jpeg library have HAVE_STDLIB_H defined in the jconfig.h header file.
Without the -qlanglvl=ansi, some older xlc versions (e.g., V7.0) still
fail, but newer xlc versions (e.g., V9.0) pass. AKC - 2010/02/17
o When building on Linux/UNIX platforms, the szip shared library files must
be in the system library path. This can be done by adding a link to
the libsz.* files in the /usr/lib folder or by adding the library
location to the LD_LIBRARY_PATH environment variable.
Ex. export LD_LIBRARY_PATH=path_to_szip_lib:$LD_LIBRARY_PATH
Optionally, one can use the static szip library files by adding '-static'
to the CFLAGS environment variable.
o Existing data written by an HDF4 Library prior to HDF 4.2r2:
When a one-dimensional SDS and a dimension scale have
the same name, subsequent accesses to the dimension scale or to the
SDS might produce undesired results because the libraries could not
distinguish between the two objects. In the case of writing, data
might even be corrupted. For example, SDS data might be written to a
dimension variable or vice versa. (bugzilla #624)
HDF4 Library Releases 4.2r2 and later make a distinction between an SDS
and a dimension variable. However, as with older versions, these recent
versions are unable to detect such conflicts in files created by earlier
releases. It is therefore STRONGLY recommended to check for such name
duplication before working with data created with a pre-4.2r2 library.
The functions SDgetnumvars_byname and SDnametoindices are provided
to help detect such name conflicts and select the correct object to
access, respectively; see the HDF Reference Manual entries for
further details.
FB - 2009/01/26
BMR - revised 2011/06/24
o N-bit compression is not supported with Fortran APIs.
o Using both fill-value and compression on SD datasets does not work.
o When using PGI compilers, make sure that the JPEG library is also compiled
with a PGI C compiler; linking with a JPEG library built with gcc causes
JPEG library tests to fail. To bypass the problem:
x Set LIBS flag to $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
where $PGI_JPEG_INSTALL_DIR points to the installation directory
for the PGI-compiled JPEG library:
setenv LIBS $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
x Use the --with-jpeg=$PGI_JPEG_INSTALL_DIR configure flag to
configure with the PGI-compiled JPEG library:
./configure --with-jpeg=$PGI_JPEG_INSTALL_DIR --with-zlib....
o In order for the API SDgetdatasize to get the correct compressed size
of the data, the dataset needs to be closed (SDendaccess) or read
(SDreaddata) after being written and before SDgetdatasize is called.
BMR - 2008/11/22
%%%4.2.9%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
HDF version 4.2.9 released on 2013-02-07
=============================================
INTRODUCTION
This document describes the differences between HDF 4.2.8 and HDF 4.2.9.
It is written for people who are familiar with previous releases of HDF
and wish to migrate to HDF 4.2.9.
The HDF 4.2.9 documentation can be found on the The HDF Group's website
at:
http://www.hdfgroup.org/doc.html
Previous versions of the documentation are available from the FTP server:
ftp://ftp.hdfgroup.org/HDF/Documentation/
First-time HDF users are encouraged to read the HDF FAQ, which can be
reached from the HDF product home page:
http://hdfgroup.org/products/hdf4/
If you have any questions or comments, please see the HDF Support page:
http://hdfgroup.org/services/support.html
CONTENTS
- New features and changes
-- Configuration
- Support for new platforms and compilers
- Bugs fixed since HDF 4.2.8
-- Configuration
-- Library
-- Utilities
- Documentation
- Platforms tested
- Known problems
New features and changes
========================
Configuration
=============
- The macro H4_NO_DEPRECATED_SYMBOLS was added to handle deprecated
functions/features. To use deprecated functions/features, the library
must be configured with option HDF4_ENABLE_DEPRECATED_SYMBOLS.
(ADB, BMR 2013/1/25)
Support for new platforms and compilers
=======================================
- Ported to Mac OSX 10.8 (Mountain Lion) with Clang as the default C
compiler. (AKC 2013/1/19)
- Ported to Mac OSX 10.8 (Mountain Lion) with Intel compilers.
(EIP 2013/02/05)
Bugs fixed since HDF 4.2.8
=========================
Configuration
=============
- Cygwin >= 1.7.7; The SunRPC of the glibc has been replaced by a TI-RPC
(Transport Independent RPC) library to support IPv6. Configure has been
updated to look for the tirpc library instead of rpc. (ADB 2012/11/09)
Library
=========
- SDgetcompress is now deprecated and not available by default. Its
availability can be activated using option HDF4_ENABLE_DEPRECATED_SYMBOLS.
(BMR 2012/1/25)
- Some memory leaks were fixed. (BMR 2012/10/01)
Utilities
=========
- Vnattrs/Vattrinfo/Vgetattr are replaced with Vnattrs2/Vattrinfo2/Vgetattr2
in various tools to ensure attributes that are not created by Vsetattr
can still be detected and accessed. The Reference Manual and User's Guide
provide details about this issue. (BMR 2012/12/25)
Documentation
=============
- The Reference Manual and User's Guide have minor updates.
- The Specification and Developer's Guide is extensively updated.
Platforms tested
================
This version has been tested in the following platforms:
Linux 2.6.32-279.19.1 gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)
.el6.ppc64 #1 GNU Fortran (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)
SMP ppc64 GNU/Linux IBM XL Fortran for Linux, V13.1 (64-bit mode)
(ostrich)
Linux 2.6.18-308.13.1.el5 #1 gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-52)
SMP i686 i386 GNU Fortran (GCC) 4.1.2 20080704
(jam) (Red Hat 4.1.2-52)
pgcc and pgf90 11.9-0 32-bit target
on x86 Linux -tp penryn
Intel(R) C Compiler, Version 12.1.0 20110811
Intel(R) Fortran Compiler, Version 12.1.0
Linux 2.6.18-308.24.1.el5 #1 gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-52)
SMP x86_64 GNU/Linux GNU Fortran (GCC) 4.1.2 20080704
(koala) (Red Hat 4.1.2-52)
icc (ICC) 12.1.0 20110811
ifort (IFORT) 12.1.0 20110811
pgcc and pgf90 11.9-0 64-bit target
on x86-64 Linux -tp nehalem
SunOS 5.10 32- and 64-bit Sun C 5.9 SunOS_sparc Patch 124867-16 2010/08/11
(linew) Sun Fortran 95 8.3 SunOS_sparc Patch 127000-13 2010/01/26
Sun C 5.11 SunOS_sparc 2010/08/13
Sun Fortran 95 8.5 SunOS_sparc 2010/08/13
SunOS 5.11 32- and 64-bit Sun C 5.12 SunOS_sparc 2011/11/16
(emu) (see "Known problem" section)
Sun Fortran 95 8.6 SunOS_sparc 2011/11/16
Windows 7 Visual Studio 2008 w/ Intel Fortran 11.1 (cmake)
Visual Studio 2010 w/ Intel Fortran 12 (cmake)
Cygwin(CYGWIN_NT-6.1 1.7.15(0.260/5/3) gcc(4.5.3)
compiler and gfortran)
Windows 7 x64 Visual Studio 2008 w/ Intel Fortran 11.1 (cmake)
Visual Studio 2010 w/ Intel Fortran 12 (cmake)
Cygwin(CYGWIN_NT-6.1 1.7.15(0.260/5/3) gcc(4.5.3)
compiler and gfortran)
MAC OS X Intel 10.6.8 icc (ICC) 12.1 Build 20120928
(64-bit) ifort (IFORT) 12.1 Build 20120928
Darwin 10.8.0 i686-apple-darwin10-gcc-4.2.1 (GCC) 4.2.1
(fred) GNU Fortran (GCC) 4.6.2 20111019
Apple clang version 1.7 (tags/Apple/clang-77)
(based on LLVM 2.9svn)
MAC OS X Intel 10.7.5 i686-apple-darwin11-llvm-gcc-4.2 (GCC) 4.2.1
(64 bit) GNU Fortran (GCC) 4.6.2 20111019
Darwin 11.4.2 icc and ifort Version 13.0 Build 20121010
(duck) Apple clang version 3.0
(tags/Apple/clang-211.12) (based on LLVM 3.0svn)
Mac OS X 10.8.2 Apple LLVM version 4.2 (clang-425.0.24)
Darwin 12.2.0 gcc i686-apple-darwin11-llvm-gcc-4.2 (GCC) 4.2.1
(wren) gfortran GNU Fortran (GCC) 4.6.2
icc and ifort Version 13.0.1.119 Build 20121010
Debian6.0.3 2.6.32-5-686 #1 SMP i686 GNU/Linux
gcc (Debian 4.4.5-8) 4.4.5
GNU Fortran (Debian 4.4.5-8) 4.4.5
Debian6.0.3 2.6.32-5-amd64 #1 SMP x86_64 GNU/Linux
gcc (Debian 4.4.5-8) 4.4.5
GNU Fortran (Debian 4.4.5-8) 4.4.5
Fedora17 3.5.2-1.fc17.i6866 #1 SMP i686 i686 i386 GNU/Linux
gcc (GCC) 4.7.0 20120507 (Red Hat 4.7.0-5)
GNU Fortran (GCC) 4.7.0 20120507 (Red Hat 4.7.0-5)
Fedora17 3.5.2-1.fc17.x86_64 #1 SMP x86_64 x86_64 x86_64 GNU/Linux
gcc (GCC) 4.7.0 20120507 (Red Hat 4.7.0-5)
GNU Fortran (GCC) 4.7.0 20120507 (Red Hat 4.7.0-5)
SUSE 12.2 3.4.6-2.10-desktop #1 SMP PREEMPT i686 i686 i386 GNU/Linux
gcc (SUSE Linux) 4.7.1
GNU Fortran (SUSE Linux) 4.7.1
SUSE 12.2 3.4.6-2.10-desktop #1 SMP PREEMPT x86_64 x86_64 x86_64 GNU/Linux
gcc (SUSE Linux) 4.7.1
GNU Fortran (SUSE Linux) 4.7.1
Ubuntu 12.04 3.2.0-29-generic #46-Ubuntu SMP i686 GNU/Linux
gcc (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3
GNU Fortran (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3
Ubuntu 12.04 3.2.0-29-generic #46-Ubuntu SMP x86_64 GNU/Linux
gcc (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3
GNU Fortran (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3
Known problems
==============
o On SunOS 5.11, the -xc99 flag has to be used with the cc compiler to avoid
compilation errors. Future releases will automatically detect the system and
add the flag. (HDFFR-1361) EIP - 2013/02/05
o For Mac OS X 10.7 Lion and on 10.8 Mountain Lion, several tests fail with
GCC, Intel and Clang compilers. Currently, this situation is detected and
-O0 level optimization is used. We will work on the issue for the next
release. (HDFFR-1358,1327,1358) EIP - 2013/02/05
o On IBM PowerPC 64, hdftest fails when gcc 4.4.6 is used with -O3 optimization
level.
o When building in AIX systems, if CC is xlc with -qlanglvl=ansi, configure
will fail when checking for the jpeglib.h header due to the duplicated
macro definition of HAVE_STDLIB_H. This is because some newer builds
of the jpeg library have HAVE_STDLIB_H defined in the jconfig.h header file.
Without the -qlanglvl=ansi, some older xlc versions (e.g., V7.0) still
fail, but newer xlc versions (e.g., V9.0) pass. AKC - 2010/02/17
o When building on Linux/UNIX platforms, the szip shared library files must
be in the system library path. This can be done by adding a link to
the libsz.* files in the /usr/lib folder or by adding the library
location to the LD_LIBRARY_PATH environment variable.
Ex. export LD_LIBRARY_PATH=path_to_szip_lib:$LD_LIBRARY_PATH
Optionally, one can use the static szip library files by adding '-static'
to the CFLAGS environment variable.
o Existing data written by an HDF4 Library prior to HDF 4.2r2:
When a one-dimensional SDS and a dimension scale have
the same name, subsequent accesses to the dimension scale or to the
SDS might produce undesired results because the libraries could not
distinguish between the two objects. In the case of writing, data
might even be corrupted. For example, SDS data might be written to a
dimension variable or vice versa.
HDF4 Library Releases 4.2r2 and later make a distinction between an SDS
and a dimension variable. However, as with older versions, these recent
versions are unable to detect such conflicts in files created by earlier
releases. It is therefore STRONGLY recommended to check for such name
duplication before working with data created with a pre-4.2r2 library.
The functions SDgetnumvars_byname and SDnametoindices are provided
to help detect such name conflicts and select the correct object to
access, respectively; see the HDF Reference Manual entries for
further details.
o This release does not support VMS systems.
o N-bit compression is not supported with Fortran APIs.
o Using both fill-value and compression on SD datasets does not work.
o When using PGI compilers, make sure that the JPEG library is also compiled
with a PGI C compiler; linking with a JPEG library built with gcc causes
JPEG library tests to fail. To bypass the problem:
x Set LIBS flag to $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
where $PGI_JPEG_INSTALL_DIR points to the installation directory
for the PGI-compiled JPEG library:
setenv LIBS $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
x Use the --with-jpeg=$PGI_JPEG_INSTALL_DIR configure flag to
configure with the PGI-compiled JPEG library:
./configure --with-jpeg=$PGI_JPEG_INSTALL_DIR --with-zlib....
o In order for the API SDgetdatasize to get the correct compressed size
of the data, the dataset needs to be closed (SDendaccess) or read
(SDreaddata) after being written and before SDgetdatasize is called.
%%%4.2.8%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
HDF version 4.2.8 released on 2012-08-03
===================================================
INTRODUCTION
This document describes the differences between HDF 4.2.7 and HDF 4.2.8.
It is written for people who are familiar with previous releases of HDF
and wish to migrate to HDF 4.2.8.
The HDF 4.2.8 documentation can be found on the The HDF Group's FTP server:
ftp://ftp.hdfgroup.org/HDF/Documentation/
First-time HDF users are encouraged to read the HDF FAQ, which can be
reached from the HDF product home page:
http://hdfgroup.org/products/hdf4/
If you have any questions or comments, please see the HDF Support page:
http://hdfgroup.org/services/support.html
CONTENTS
- New features and changes
-- Source distribution
-- Configuration
-- Library
-- Utilities
- Support for new platforms and compilers
- Bugs fixed since HDF 4.2.7
-- Configuration
-- Library
-- Utilities
- Documentation
- Platforms tested
- Known problems
New features and changes
========================
Source distribution
===================
- [None. PPM - YYYY/MM/DD]
Configuration
=============
- [None]
Library
=========
- It was discovered by the HDF Mapping Project that there were certain
type of palettes that cannot be retrieved by existing functions. A new
function, GRgetpalinfo, was added to allow applications to get information
about palettes. Please refer to the HDF User's Guide and Reference Manual
for more information regarding this palette issue. BMR - 2012/07/26
- It was also discovered that the IMCOMP compression was not detected.
Although IMCOMP is no longer supported in new data, HDF still needs to
detect IMCOMP compression from existing data. We added COMP_CODE_IMCOMP
to comp_coder_t with value 12 (same as COMP_IMCOMP.) The library and
hdp now can detect IMCOMP compression. However, writing IMCOMP compressed
images is not allowed. BMR - 2012/07/26
- Added GRgetcomptype to return image's compression, which can include
IMCOMP. BMR - 2012/07/26
Test
====
- [None]
Utilities
=========
- [None]
Support for new platforms and compilers
=======================================
- Mac OS X 10.7.4 with GNU gcc and gfortran compilers
Bugs fixed since HDF 4.2.7
=========================
Configuration
=============
- Add config/apple-darwin11.4.0 customized for Mac OS X 10.7 Lion. This one
set production CFLAGS to -O0 to eliminate the test errors encountered in
Lion systems only. This one lets HDF4 to be build and run in Lion systems.
More investigate needed to locate the exact locations of the errors.
(HDFFR-1327 and HDFFR-1328) AKC - 2012/07/03
- The USE_ENUM in mfhdf/libsrc/netcdf.h, which is copied from
config/netcdf-apple.h, which generated an error due to xdr_enum overwrote
memory outside of its designated enum variable. This happened only to the
apple provided compiler (i686-apple-darwin11-llvm-gcc-4.2 (GCC) 4.2.1).
We decided to not define USE_ENUM for all apple OS for now. (HDFFR-1318)
AKC - 2012/07/01
Library
=========
- [None]
Utilities
=========
- Added test file IMCOMP.hdf and sample file dumpgr-20.out for IMCOMP test
for testing the detection of IMCOMP compressed image in hdp.
BMR - 2012/07/26
Documentation
==============
- The Reference Manual and User's Guide have been updated to include
new functions:
+ GRgetpalinfo
+ GRgetcomptype
BMR - 2012/07/26
Platforms tested
================
This version has been tested in the following platforms:
Linux 2.6.32-279.2.1 gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)
.el6.ppc64 #1 GNU Fortran (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)
SMP ppc64 GNU/Linux IBM XL Fortran for Linux, V13.1 (64-bit mode)
(ostrich)
Linux 2.6.18-194.3.1.el5 #1 gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-50)
SMP i686 i386 GNU Fortran (GCC) 4.1.2 20080704
(jam) (Red Hat 4.1.2-52)
pgcc and pgf90 11.9-0 32-bit target
on x86 Linux -tp penryn
Intel(R) C Compiler, Version 12.1.0 20110811
Intel(R) Fortran Compiler, Version 12.1.0
Linux 2.6.18-274.17.1.el5 #1 gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-51)
SMP x86_64 GNU/Linux GNU Fortran (GCC) 4.1.2 20080704
(koala) (Red Hat 4.1.2-51)
icc (ICC) 12.1.0 20110811
ifort (IFORT) 12.1.0 20110811
pgcc and pgf90 11.9-0 64-bit target
on x86-64 Linux -tp nehalem
SunOS 5.10 32- and 64-bit Sun C 5.9 SunOS_sparc Patch 124867-16 2010/08/11
(linew) Sun Fortran 95 8.3 SunOS_sparc Patch 127000-13 2010/01/26
Xeon Linux 2.6.32.24-0.2.1.2230.2.PTF-default
#1 SMP x86_64 Intel(R) C Compiler Version 11.1.073 20100806
SGI Altix UV Intel(R) Fortran Compiler Version 11.1.073
(ember) gcc (SUSE Linux) 4.3.4 [gcc-4_3-branch revision 152973
GNU Fortran (SUSE Linux) 4.3.4 [gcc-4_3-branch revision 152973]
Windows 7 Visual Studio 2008 w/ Intel Fortran 11.1 (cmake)
Visual Studio 2010 w/ Intel Fortran 12 (cmake)
Cygwin(1.7.15 native gcc(4.5.3) compiler and gfortran)
Windows 7 x64 Visual Studio 2008 w/ Intel Fortran 11.1 (cmake)
Visual Studio 2010 w/ Intel Fortran 12 (cmake)
Cygwin(1.7.15 native gcc(4.5.3) compiler and gfortran)
MAC OS X Intel 10.6.8 Darwin 10.8.0
(32 bit) i686-apple-darwin10-gcc-4.2.1 (GCC) 4.2.1
(tejeda) GNU Fortran (GCC) 4.6.1
icc (ICC) 12.1.0 20110811
ifort (IFORT) 12.1.0 20110811
MAC OS X Intel 10.6.8 Darwin 10.8.0
(64 bit) icc (ICC) 12.1.0 20110811
(fred) ifort (IFORT) 12.1.0 20110811
i686-apple-darwin10-gcc-4.2.1 (GCC) 4.2.1
GNU Fortran (GCC) 4.6.2
MAC OS X Intel 10.7.4 Darwin 11.4.0
(64 bit) i686-apple-darwin11-llvm-gcc-4.2.1 (GCC) 4.2.1
(hdf-duck) gcc (GCC) 4.6.2
GNU Fortran (GCC) 4.6.2
Debian6.0.3 2.6.32-5-686 #1 SMP i686 GNU/Linux
gcc (Debian 4.4.5-8) 4.4.5
GNU Fortran (Debian 4.4.5-8) 4.4.5
Debian6.0.3 2.6.32-5-amd64 #1 SMP x86_64 GNU/Linux
gcc (Debian 4.4.5-8) 4.4.5
GNU Fortran (Debian 4.4.5-8) 4.4.5
Fedora15 3.2.9-2.fc16.i686.PAE #1 SMP i686 i686 i386 GNU/Linux
gcc (GCC) 4.6.2 20111027 (Red Hat 4.6.2-1)
GNU Fortran (GCC) 4.6.2 20111027 (Red Hat 4.6.2-1)
Fedora15 3.2.9-2.fc16.x86_64 #1 SMP x86_64 x86_64 x86_64 GNU/Linux
gcc (GCC) 4.6.2 20111027 (Red Hat 4.6.2-1)
GNU Fortran (GCC) 4.6.2 20111027 (Red Hat 4.6.2-1)
SUSE 12.1 3.1.9-1.4-desktop #1 SMP PREEMPT i686 i686 i386 GNU/Linux
gcc (SUSE Linux) 4.6.2
GNU Fortran (SUSE Linux) 4.6.2
SUSE 12.1 3.1.9-1.4-desktop #1 SMP PREEMPT x86_64 x86_64 x86_64 GNU/Linux
gcc (SUSE Linux) 4.6.2
GNU Fortran (SUSE Linux) 4.6.2
Ubuntu 11.10 3.2.0-26-generic #23-Ubuntu SMP i686 GNU/Linux
gcc (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3
GNU Fortran (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3
Ubuntu 11.10 3.2.0-26-generic #23-Ubuntu SMP x86_64 GNU/Linux
gcc (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3
GNU Fortran (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3
Known problems
==============
o For Mac OS X 10.7 Lion, the test suite on the mfhdf side encounters 2 errors,
when optimization is used, whether with the Apple GCC compiler or with the
GNU GCC compiler. CFLAGS must be set to use no optimization (-O0 or -g) to
avoid these failures. config/apple-darwin11.4.0 is added to direct configure
to use -O0 for CFLAGS for Mac OS X 10.7 Lion. We hope to fix the bug in the
next release. (HDFFR-1327 and HDFFR-1328) AKC - 2012/07/03
o On IBM PowerPC 64 hdftest fails when gcc 4.4.6 is used with -O3 optimization level.
o When building in AIX systems, if CC is xlc with -qlanglvl=ansi, configure
will fail when checking for the jpeglib.h header due to the duplicated
macro definition of HAVE_STDLIB_H. This is because some newer builds
of jpeg library have HAVE_STDLIB_H defined in the jconfig.h header file.
Without the -qlanglvl=ansi, some older xlc (e.g., V7.0) still fails but
newer xlc (e.g., V9.0) passes. AKC - 2010/02/17
o When building on Linux/UNIX platforms, the szip shared library files must
be in the system library path. This can be done by adding a link to
the libsz.* files in the /usr/lib folder or by adding the library
location to the LD_LIBRARY_PATH environment variable.
Ex. export LD_LIBRARY_PATH=path_to_szip_lib:$LD_LIBRARY_PATH
Optionally, one can use the static szip library files by adding '-static'
to the CFLAGS environment variable.
o Existing data written by an HDF4 Library prior to HDF 4.2r2:
When a one-dimensional SDS and a dimension scale have
the same name, subsequent accesses to the dimension scale or to the
SDS might produce undesired results because the libraries could not
distinguish between the two objects. In the case of writing, data
might even be corrupted. For example, SDS data might be written to a
dimension variable or vice versa.
HDF4 Library Releases 4.2r2 and later make a distinction between an SDS
and a dimension variable. However, as with older versions, these recent
versions are unable to detect such conflicts in files created by earlier
releases. It is therefore STRONGLY recommended to check for such name
duplication before working with data created with a pre-4.2r2 library.
The functions SDgetnumvars_byname and SDnametoindices are provided
to help detect such name conflicts and select the correct object to
access, respectively; see the HDF Reference Manual entries for
further details.
o This release does not support VMS systems.
o N-bit compression is not supported with Fortran APIs.
o Using both fill-value and compression on SD datasets does not work.
o When using PGI compilers, make sure that the JPEG library is also compiled
with a PGI C compiler; linking with a JPEG library built with gcc causes
JPEG library tests to fail. To bypass the problem:
x Set LIBS flag to $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
where $PGI_JPEG_INSTALL_DIR points to the installation directory
for the PGI-compiled JPEG library:
setenv LIBS $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
x Use the --with-jpeg=$PGI_JPEG_INSTALL_DIR configure flag to
configure with the PGI-compiled JPEG library:
./configure --with-jpeg=$PGI_JPEG_INSTALL_DIR --with-zlib....
o In order for the API SDgetdatasize to get the correct compressed size
of the data, the dataset needs to be closed (SDendaccess) or read
(SDreaddata) after being written and before SDgetdatasize is called.
%%%4.2.7%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
HDF version 4.2.7 released on 2012-02-06
===================================================
INTRODUCTION
This document describes the differences between HDF 4.2.6 and HDF 4.2.7.
It is written for people who are familiar with previous releases of HDF
and wish to migrate to HDF 4.2.7.
The HDF 4.2.7 documentation can be found on the The HDF Group's FTP server:
ftp://ftp.hdfgroup.org/HDF/Documentation/
First-time HDF users are encouraged to read the HDF FAQ, which can be
reached from the HDF product home page:
http://hdfgroup.org/products/hdf4/
If you have any questions or comments, please see the HDF Support page:
http://hdfgroup.org/services/support.html
CONTENTS
- New features and changes
-- Source distribution
-- Configuration
-- Library
-- Utilities
- Support for new platforms and compilers
- Bugs fixed since HDF4.2.6
-- Utilities
-- Library
-- Configuration
- Documentation
- Platforms tested
- Known problems
New features and changes
========================
Source distribution
===================
- None
Configuration
=============
- Fortran fort_ps folders are now obsolete, and VS2008 project
files have been updated.
CMake was tested on Windows, Linux, and Cygwin.
ADB - 2012/1/20
Library
=========
- Fortran fort_ps folders are obsolete and have been removed.
ADB - 2012/1/20
- VSgetexternalfile and SDgetexternalfile are superseded by VSgetexternalinfo
and SDgetexternalinfo because their prototypes missed the parameter
"length" for external data length. (part 1 in bug HDFFR-1297)
BMR - 2012/1/15
- Visinternal is superseded by Vgisinternal, which allows the handling of
special cases in old data. (part 2 in bug HDFFR-1297)
BMR - 2012/1/15
- Fortran wrappers vfgvgroups and vsfgvdatas have been added for
Vgetvgroups and VSgetvdatas, respectively.
MSB - 2012/1/5
Test
====
- The following files were added:
./hdf/test/test_files/README: special notes on data files in this directory
./hdf/test/test_files/grtdfui83.hdf: file to test old data situations
./mfhdf/test/tutils.c: added to provide common code for various tests
BMR - 2011/1/21
- The following file was removed:
./mfhdf/test/tidtypes.c: changed to tmixed_apis.c for broader contents
BMR - 2011/1/21
Utilities
=========
- The following files were added:
./mfhdf/dumper/testfiles/Roy.nc: file to test skipping compression check
in a netCDF file
./mfhdf/dumper/testfiles/dumpsds-18.out: output of testing netCDF file
./hdf/test/tvnameclass.c: tests issues involving vgroup/vdata names/classes
BMR - 2011/1/21
Support for new platforms and compilers
=======================================
- IBM XL Fortran for Linux 64-bit, V13.1 on Linux PowerPC 64
EIP - 2012-02-01
Bugs fixed since HDF4.2.6
=========================
Utilities
=========
- hrepack: Version HDF4 2.6 does not allow the combination of unlimited
dimensions and compression, which is wrong.
- Freeing incorrect buffers caused segfault. It was previously commented
out, thus resulted in memory leaks. This is now fixed. (HDFFR-479)
BMR - 2011/11/3
- hdp: fixed to skip netCDF files when checking for compression. (HDFFR-473)
BMR - 2011/11/1
Library
=========
- SDgetchunkinfo and SDreadchunk failed on an empty SDS when the file is
opened as read-only (HDFFR-171). This is now fixed.
BMR - 2011/10/20
- SDcheckempty was fixed to return "empty" when detecting a pair of
DFTAG_SD/<valid ref> that is associated with offset=INVALID_OFFSET and
length=INVALID_LENGTH.
BMR - 2011/10/9
- Vgetclass and Vgetname were fixed to return vgclass and vgname with null
terminated character when the class or name is not set. (HDFFR-1288)
BMR - 2011/9/19
Configuration
=============
- [None]
Documentation
==============
- The Reference Manual and User's Guide have been updated to include
new functions:
+ VSgetexternalinfo and SDgetexternalinfo
+ Vgisinternal
+ Fortran wrappers vfgvgroups and vsfgvdatas
BMR - 2012/1/22
Platforms tested
================
This version has been tested in the following platforms:
Linux 2.6.32-220.2.1 gcc (GCC) 4.4.6 20110731 (Red Hat 4.4.6-3)
.el6.ppc64 #1 GNU Fortran (GCC) 4.4.6 20110731
SMP ppc64 GNU/Linux IBM XL Fortran for Linux, V13.1 (64-bit mode)
(ostrich)
Linux 2.6.18-194.3.1.el5 #1 gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-50)
SMP i686 i386 GNU Fortran (GCC) 4.1.2 20080704
(jam) (Red Hat 4.1.2-51)
pgcc and pgf90 11.8-0 32-bit target
on x86 Linux -tp penryn
Intel(R) C Compiler, Version 12.0.4 20110427
Intel(R) Fortran Compiler, Version 12.0.4
Linux 2.6.18-274.17.1.el5 #1 gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-51)
SMP x86_64 GNU/Linux GNU Fortran (GCC) 4.1.2 20080704
(koala) (Red Hat 4.1.2-51)
icc (ICC) 12.0.4 20110427
ifort (IFORT) 12.0.4 20110427
pgcc and pgf90 11.8-0 64-bit target
on x86-64 Linux -tp nehalem
SunOS 5.10 32- and 64-bit Sun C 5.9 SunOS_sparc Patch 124867-16 2010/08/11
(linew) Sun Fortran 95 8.3 SunOS_sparc Patch 127000-13 2010/01/26
Xeon Linux 2.6.32.24-0.2.1.2230.2.PTF-default
#1 SMP x86_64 Intel(R) C Compiler Version 11.1.073 20100806
SGI Altix UV Intel(R) Fortran Compiler Version 11.1.073
(ember)
Windows XP Visual Studio 2008 w/ Intel Fortran 10.1 (project files)
Visual Studio 2008 w/ Intel Fortran 11.1 (cmake)
Visual Studio 2010 w/ Intel Fortran 12 (cmake)
Cygwin(1.7.9 native gcc(4.5.3) compiler and gfortran)
Windows XP x64 Visual Studio 2008 w/ Intel Fortran 10.1 (project files)
Visual Studio 2008 w/ Intel Fortran 11.1 (cmake)
Visual Studio 2010 w/ Intel Fortran 12 (cmake)
Cygwin(1.7.9 native gcc(4.5.3) compiler and gfortran)
Windows 7 Visual Studio 2008 w/ Intel Fortran 11.1 (cmake)
Visual Studio 2010 w/ Intel Fortran 12 (cmake)
Windows 7 x64 Visual Studio 2008 w/ Intel Fortran 11.1 (cmake)
Visual Studio 2010 w/ Intel Fortran 12 (cmake)
MAC OS X Intel 10.6.8 Darwin 10.8.0
(32 bit) i686-apple-darwin10-gcc-4.2.1 (GCC) 4.2.1
(tejeda) GNU Fortran (GCC) 4.6.1
icc (ICC) 12.1.0 20110811
ifort (IFORT) 12.1.0 20110811
MAC OS X Intel 10.6.8 Darwin 10.8.0
(64 bit) icc (ICC) 12.1.0 20110811
(fred) ifort (IFORT) 12.1.0 20110811
i686-apple-darwin10-gcc-4.2.1 (GCC) 4.2.1
GNU Fortran (GCC) 4.6.1
Debian6.0.3 2.6.32-5-686 #1 SMP i686 GNU/Linux
gcc (Debian 4.4.5-8) 4.4.5
GNU Fortran (Debian 4.4.5-8) 4.4.5
Debian6.0.3 2.6.32-5-amd64 #1 SMP x86_64 GNU/Linux
gcc (Debian 4.4.5-8) 4.4.5
GNU Fortran (Debian 4.4.5-8) 4.4.5
Fedora15 2.6.41.4-1.fc15.i686.PAE #1 SMP i686 i686 i386 GNU/Linux
gcc (GCC) 4.6.1 20110908 (Red Hat 4.6.1-9)
GNU Fortran (GCC) 4.6.1 20110908 (Red Hat 4.6.1-9)
Fedora15 2.6.41.4-1.fc15.x86_64 #1 SMP x86_64 x86_64 x86_64 GNU/Linux
gcc (GCC) 4.6.1 20110908 (Red Hat 4.6.1-9)
GNU Fortran (GCC) 4.6.1 20110908 (Red Hat 4.6.1-9)
SUSE 11.4 2.6.37.6-0.9-desktop #1 SMP PREEMPT i686 i686 i386 GNU/Linux
gcc (SUSE Linux) 4.5.1 20101208
GNU Fortran (SUSE Linux) 4.5.1 20101208
SUSE 11.4 2.6.37.6-0.9-desktop #1 SMP PREEMPT x86_64 x86_64 x86_64 GNU/Linux
gcc (SUSE Linux) 4.5.1 20101208
GNU Fortran (SUSE Linux) 4.5.1 20101208
Ubuntu 11.10 3.0.0-14-generic #23-Ubuntu SMP i686 GNU/Linux
gcc (Ubuntu/Linaro 4.6.1-9ubuntu3) 4.6.1
GNU Fortran (Ubuntu/Linaro 4.6.4-9ubuntu3) 4.6.1
Ubuntu 11.10 3.0.0-14-generic #23-Ubuntu SMP x86_64 GNU/Linux
gcc (Ubuntu/Linaro 4.6.1-9ubuntu3) 4.6.1
GNU Fortran (Ubuntu/Linaro 4.6.1-9ubuntu3) 4.6.1
Known problems
==============
o On IBM PowerPC 64 hdftest fails when gcc 4.4.6 is used with -O3 optimization level.
o When building in AIX systems, if CC is xlc with -qlanglvl=ansi, configure
fails when checking for the jpeglib.h header due to the duplicated
macro definition of HAVE_STDLIB_H. This is because some newer builds
of jpeg library have HAVE_STDLIB_H defined in the jconfig.h header file.
Without the -qlanglvl=ansi, some older xlc (e.g., V7.0) still fails but
newer xlc (e.g., V9.0) passes. AKC - 2010/02/17
o When building on Linux/UNIX platforms, the szip shared library files must
be in the system library path. This can be done by adding a link to
the libsz.* files in the /usr/lib folder or by adding the library
location to the LD_LIBRARY_PATH environment variable.
Ex. export LD_LIBRARY_PATH=path_to_szip_lib:$LD_LIBRARY_PATH
Optionally, one can use the static szip library files by adding '-static'
to the CFLAGS environment variable.
o Existing data written by an HDF4 Library prior to HDF 4.2r2:
When a one-dimensional SDS and a dimension scale have
the same name, subsequent accesses to the dimension scale or to the
SDS might produce undesired results because the libraries could not
distinguish between the two objects. In the case of writing, data
might even be corrupted. For example, SDS data might be written to a
dimension variable or vice versa.
HDF4 Library Releases 4.2r2 and later make a distinction between an SDS
and a dimension variable. However, as with older versions, these recent
versions are unable to detect such conflicts in files created by earlier
releases. It is therefore STRONGLY recommended to check for such name
duplication before working with data created with a pre-4.2r2 library.
The functions SDgetnumvars_byname and SDnametoindices are provided
to help detect such name conflicts and select the correct object to
access, respectively; see the HDF Reference Manual entries for
further details.
o This release does not support VMS systems.
o N-bit compression is not supported with Fortran APIs.
o Using both fill-value and compression on SD datasets does not work.
o When using PGI compilers, make sure that the JPEG library is also compiled
with a PGI C compiler; linking with a JPEG library built with gcc causes
JPEG library tests to fail. To bypass the problem:
x Set LIBS flag to $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
where $PGI_JPEG_INSTALL_DIR points to the installation directory
for the PGI-compiled JPEG library:
setenv LIBS $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
x Use the --with-jpeg=$PGI_JPEG_INSTALL_DIR configure flag to
configure with the PGI-compiled JPEG library:
./configure --with-jpeg=$PGI_JPEG_INSTALL_DIR --with-zlib....
o In order for the API SDgetdatasize to get the correct compressed size
of the data, the dataset needs to be closed (SDendaccess) or read
(SDreaddata) after being written and before SDgetdatasize is called.
%%%4.2.6%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
HDF version 4.2.6 released on 2011-06-15
===================================================
INTRODUCTION
This document describes the differences between HDF 4.2.5 and HDF 4.2.6.
It is written for people who are familiar with previous releases of HDF
and wish to migrate to HDF 4.2.6.
The HDF 4.2.6 documentation can be found on the The HDF Group's FTP server:
ftp://ftp.hdfgroup.org/HDF/Documentation/
First-time HDF users are encouraged to read the HDF FAQ, which can be
reached from the HDF product home page:
http://hdfgroup.org/products/hdf4/
If you have any questions or comments, please see the HDF Support page:
http://hdfgroup.org/services/support.html
CONTENTS
- New features and changes
-- Source distribution
-- Configuration
-- Library
-- Utilities
- Support for new platforms and compilers
- Bugs fixed since HDF4.2.5
-- Utilities
-- Library
-- Configuration
- Documentation
- Platforms tested
- Known problems
New features and changes
========================
Source distribution
===================
- [None]
Configuration
=============
- CMake support has been added. Current version recommemded is CMake 2.8.4.
ADB - 2011/06/14
- Specified explicit version of the netCDF API (v 2.3.2) used by HDF in
configure help and in configuration SUMMARY.
Library
=========
- Prior to HDF version 4.2.6, passing 0 for count caused failure; however,
the failure did not occur in SDsetattr but was delayed until SDend. This
can potentially cause file corruption. Starting from release 4.2.6,
SDsetattr will fail when count is 0. BMR - 2011/06/09
- The function Vnattrs only processes attributes created by Vsetattr. It is
not aware of attributes created by the pre-Vsetattr methods. The following
functions are added to work around the limitation of Vnattrs:
+ Vnattrs2 gives number of new- and old-style attributes
+ Vattrinfo2 gives information about an old or new style attribute
+ Vgetattr2 reads values of an old or new style attribute
BMR - 2011/06/09
- The following functions were added to support the HDF4 Mapping
project specifically:
+ VSgetdatainfo gives offsets/lengths of a vdata's data
+ ANgetdatainfo gives offset/length of an annotation's data
+ SDgetdatainfo gives offsets/lengths of a data set's data
+ GRgetdatainfo gives offsets/lengths of a raster image's data
+ VSgetattdatainfo gives offset/length of vdata attribute's data
+ VGgetattdatainfo gives offset/length of vgroup attribute's data
+ GRgetattdatainfo gives offset/length of raster image attribute's data
+ SDgetattdatainfo gives offset/length of data set attribute's data
+ SDgetoldattdatainfo gives offset/length of a pre-defined attribute in
old format
+ SDgetanndatainfo gives offset/length of an annotation belonging to an SDS
+ Vgetvgroups gives a list of user-created vgroups
+ VSgetvdatas gives a list of user-created vdatas
+ VSofclass gives a list of vdatas of a specific class
+ Hgetntinfo gives some information about a number type
+ GR2bmapped indicates whether a raster image should be mapped
BMR - 2011/06/09
- Two functions are added to provide information of an external file:
VSgetexternalfile for a vdata and SDgetexternalfile for a data set.
BMR - 2011/06/09
Utilities
=========
- [None]
Support for new platforms and compilers
=======================================
- [None]
Bugs fixed since HDF4.2.5
=========================
Utilities
=========
- hdp dumpvd and dumpsds now provide the name of the external file in the
error message when reading fails due to missing the external file.
BMR - 2011/06/10
- The problem where hdiff displays zeroes for Vdata values that are non-zero
had been fixed. BMR - 2011/06/09
- hdp had been fixed for the problems of
+ dumpvd printing Name/Class incorrectly
+ dumprig giving wrong info about RIS24 and palettes
+ dumpvg missing some items in the Graphical representation
BMR - 2011/06/09
Library
=========
- The JPEG test failure due to the different versions of the JPEG library
had been fixed. HDF4 is expected to build and pass regression tests for
any version of the JPEG library available on the user's systems.
BMR - 2011/06/09
Configuration
=============
- [None]
Documentation
==============
The updated HDF Reference Manual is now available in HTML format.
Platforms tested
================
This version has been tested in the following platforms:
Linux 2.6.18-194.3.1.el5 #1 gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-50)
SMP i686 i386 G95 (GCC 4.0.3 (g95 0.92!) Jun 24 2009)
(jam) g77 (GCC) 3.4.6 20060404
pgcc and pgf90 10.6-0 32-bit target
on x86 Linux -tp penryn
Intel(R) C Compiler, Version 11.1
Intel(R) Fortran Compiler, Version 11.1
GNU Fortran (GCC) 4.1.2 20080704
(Red Hat 4.1.2-50)
Linux 2.6.18-238.9.1.el5 #1 gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-50)
SMP x86_64 GNU/Linux G95 (GCC 4.0.3 (g95 0.93!) Apr 21 2010)
(koala) icc (ICC) 12.0.3 20110309
ifort (IFORT) 12.0.3 20110309
pgcc and pgf90 11.3-0 64-bit target
on x86-64 Linux -tp nehalem
GNU Fortran (GCC) 4.1.2 20080704
(Red Hat 4.1.2-50)
SunOS 5.10 32- and 64-bit Sun C 5.9 SunOS_sparc Patch 124867-16
(linew) Sun Fortran 95 8.3 SunOS_sparc
Patch 127000-13
Xeon Linux 2.6.32.24-0.2.1.2230.2.PTF-default
#1 SMP x86_64 Intel(R) C Compiler Version 11.1.073
SGI Altix UV Intel(R) Fortran Compiler Version 11.1.073
(ember)
AIX 6.1 (32/64 bit) IBM XL C/C++ for AIX, V11.1
(NCSA bp-login) IBM XL Fortran for AIX, V13.1
Windows XP Visual Studio 2008 w/ Intel Fortran 10.1 (project files)
Visual Studio 2008 w/ Intel Fortran 11.1 (cmake)
Visual Studio 2010 (cmake)
Cygwin(1.7.7 native gcc(4.3.4) compiler and gfortran)
Windows XP x64 Visual Studio 2008 w/ Intel Fortran 10.1 (project files)
Visual Studio 2008 w/ Intel Fortran 11.1 (cmake)
Visual Studio 2010 (cmake)
Cygwin(1.7.7 native gcc(4.3.4) compiler and gfortran)
Windows 7 Visual Studio 2008 w/ Intel Fortran 11.1 (cmake)
Windows 7 x64 Visual Studio 2008 w/ Intel Fortran 11.1 (cmake)
MAC OS X Intel 10.6.2 Darwin 10.7.0
(32 bit) i686-apple-darwin10-gcc-4.2.1 (GCC) 4.2.1
(tejeda) GNU Fortran (GCC) 4.4.0 20090123
MAC OS X Intel 10.6.2 Darwin 10.7.0
(64 bit) Intel C icc (ICC) 12.0 20101110
(fred) Intel Fortran ifort (IFORT) 12.0 20101110
i686-apple-darwin10-gcc-4.2.1 (GCC) 4.2.1
GNU Fortran (GCC) 4.6.0
Debian6.01 2.6.32-5-686 #1 SMP i686 GNU/Linux
gcc (Debian 4.4.5-8) 4.4.5
GNU Fortran (Debian 4.4.5-8) 4.4.5
Debian6.01 2.6.32-5-amd64 #1 SMP x86_64 GNU/Linux
gcc (Debian 4.4.5-8) 4.4.5
GNU Fortran (Debian 4.4.5-8) 4.4.5
Fedora14 2.6.35.12-88.fc14.i686.PAE #1 SMP i686 i686 i386 GNU/Linux
gcc (GCC) 4.5.1 20100924 (Red Hat 4.5.1-4)
GNU Fortran (GCC) 4.5.1 20100924 (Red Hat 4.5.1-4)
Fedora14 2.6.35.12-88.fc14.x86_64 #1 SMP x86_64 x86_64 x86_64 GNU/Linux
gcc (GCC) 4.5.1 20100924 (Red Hat 4.5.1-4)
GNU Fortran (GCC) 4.5.1 20100924 (Red Hat 4.5.1-4)
SUSE 11.4 2.6.37.1-1.2-desktop #1 SMP PREEMPT i686 i686 i386 GNU/Linux
gcc (SUSE Linux) 4.5.1 20101208
GNU Fortran (SUSE Linux) 4.5.1 20101208
SUSE 11.4 2.6.37.1-1.2-desktop #1 SMP PREEMPT x86_64 x86_64 x86_64 GNU/Linux
gcc (SUSE Linux) 4.5.1 20101208
GNU Fortran (SUSE Linux) 4.5.1 20101208
Ubuntu 10.10 2.6.35-28-generic #50-Ubuntu SMP i686 GNU/Linux
gcc (Ubuntu/Linaro 4.4.4-14ubuntu5) 4.4.5
GNU Fortran (Ubuntu/Linaro 4.4.4-14ubuntu5) 4.4.5
Ubuntu 10.10 2.6.35-28-generic #50-Ubuntu SMP x86_64 GNU/Linux
gcc (Ubuntu/Linaro 4.4.4-14ubuntu5) 4.4.5
GNU Fortran (Ubuntu/Linaro 4.4.4-14ubuntu5) 4.4.5
Known problems
==============
o When building in AIX systems, if CC is xlc with -qlanglvl=ansi, configure
fails when checking for the jpeglib.h header due to the duplicated
macro definition of HAVE_STDLIB_H. This is because some newer builds
of jpeg library has HAVE_STDLIB_H defined in its jconfig.h header file.
Without the -qlanglvl=ansi, some older xlc (e.g., V7.0) still fails but
newer xlc (e.g., V9.0) passes. AKC - 2010/02/17
o When building on Linux/UNIX platforms, the szip shared library files must
be in the system library path. This can be done by adding a link to
the libsz.* files into the /usr/lib folder or by adding the library
location to the LD_LIBRARY_PATH environment variable.
Ex. export LD_LIBRARY_PATH=path_to_szip_lib:$LD_LIBRARY_PATH
Optionally, one can use the static szip library files by adding '-static'
to the CFLAGS environment variable.
o Existing data written by an HDF4 Library prior to HDF 4.2r2:
When a one-dimensional SDS and a dimension scale were created with
the same name, subsequent accesses to the dimension scale or to the
SDS might corrupt the data.
HDF4 Library Releases 4.2r2 and later do not allow this conflict to
occur. On the other hand, recent libraries are also unable to detect
such conflicts that already exist in a file. It is therefore STRONGLY
recommended to check for such name duplication before working with data
created with a pre-4.2r2 library.
The functions SDgetnumvars_byname and SDnametoindices are provided
to help detect such name conflicts and select the correct object to
access, respectively; see the HDF Reference Manual entries for
further details.
o This release does not support VMS systems.
o N-Bit compression is not supported with Fortran APIs.
o Using both fill-value and compression on SD datasets does not work.
o When using PGI compilers, make sure that the JPEG library is also compiled
with a PGI C compiler; linking with a JPEG library built with gcc causes
JPEG library tests to fail. To bypass the problem:
x Set LIBS flag to $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
where $PGI_JPEG_INSTALL_DIR points to the installation directory
for the PGI-compiled JPEG library:
setenv LIBS $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
x Use the --with-jpeg=$PGI_JPEG_INSTALL_DIR configure flag to
configure with the PGI-compiled JPEG library:
./configure --with-jpeg=$PGI_JPEG_INSTALL_DIR --with-zlib....
o In order for the API SDgetdatasize to get the correct compressed size
of the data, the dataset needs to be closed (SDendaccess) or read
(SDreaddata), after being written and before SDgetdatasize is called.
%%%4.2.5%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
HDF version 4.2.5 released on Wed Feb 24 13:00:16 CST 2010
===================================================
INTRODUCTION
This document describes the differences between HDF 4.2.4 and HDF 4.2.5
It is written for people who are familiar with previous releases of HDF
and wish to migrate to HDF 4.2.5
The HDF 4.2.5 documentation can be found on the The HDF Group's FTP server:
ftp://ftp.hdfgroup.org/HDF/Documentation/
First-time HDF users are encouraged to read the HDF FAQ, which can be
reached from the HDF product home page:
http://hdfgroup.org/products/hdf4/
If you have any questions or comments, please see the HDF Support page:
http://hdfgroup.org/services/support.html
CONTENTS
- New features and changes
-- Source distribution
-- Configuration
-- Library
-- Utilities
- Support for new platforms and compilers
- Bugs fixed since HDF4.2.4
-- Utilities
-- Library
-- Configuration
- Documentation
- Platforms tested
- Known problems
- Appendix: List of the removed files
New features and changes
========================
Source distribution
===================
- For the complete list of the removed obsolete files see Appendix.
- Removed obsolete mfhdf/port and mfhdf/c++ directories and related
code
(EIP - 2010/1/18)
- Removed obsolete hdf/fmpool directory and related code
- Removed obsolete constants PCIO, WINIO, PAGEBIFIO, and WINNTIO from
hdfi.h and hfile.h
(EIP - 2009/12/31)
- INSTALL* files were moved to the release_notes directory
(EIP - 2009/12/29)
- SD tests were moved from mfhdf/libsrc to mfhdf/test.
(BMR - 2009/09/10)
Configuration
=============
- Added a configure check that will fail when jpeg version 7 is
used, as this is not yet supported in HDF4. (MAM - 2010/01/28)
- Configure suite now built with the following versions of the autotools:
Automake 1.11.1, Autoconf 2.65, and Libtool 2.2.6b
(MAM - 2009/12/14)
Library
=========
- SDgetchunkinfo now contains compression type and compression
information. If failure occurs while getting compression information,
the associate compression parameters will be set to -1 to indicate
that no compression information is retrieved, instead of SDgetchunkinfo
simply fails. This is to support backward compatibility.
(BMR - 2010/02/04)
- Vgroup name and class name can now be more than the previous limit
of 64 characters. Two public functions are provided for applications
to be able to allocate sufficient space for these items.
int32 Vgetnamelen (int32 vkey, uint16 *name_len);
int32 Vgetclassnamelen (int32 vkey, uint16 *classname_len);
Please refer to the Reference Manual and User's Guide for details.
(BMR - 2010/01/27)
- SDreset_maxopenfiles allows users to reset the number of the files that
can be open at the same time to the system limit minus 3. On AIX 6.1
system limit is 2GB-1 causing HDF4 to choke. Source code was modified
to put a cap on the system limit to not exceed
H4_MAX_AVAIL_OPENFILES (currently 20000). (EIP - 2010/02/01)
- "make installcheck" builds and tests examples using h4cc and h4fc
scripts (MAM, BMR and MSB - 2009/12)
- HDF Fortran examples were added to hdf/fortran/examples.
(MAM - 2009/12/14)
- SD examples were added to mfhdf/examples. (BMR - 2009/08/28)
- HDF C examples were added to hdf/examples. (BMR - 2009/11/07)
Test
====
- Added tests for GRfindattr, GRattrinfo, and GRgetattr (BMR - 2009/11/15)
- Moved SD tests out of mfhdf/libsrc into the new directory mfhdf/test
(BMR - 2009/09/10)
Utilities
=========
- Added flag -k to hdp dumpsds to keep the order of the outputted
SDSs the same as the order they were specified on the command
line. The default (without -k) is SDSs are printed in the order
in which they were added to the file (ie., indices.) (BMR - 2010/02/03)
- Added -V flag to hdiff, hrepack, hdfimport, ncdump and ncgen;
when specified, tool prints library version string and exits.
(EIP - 2010/01/28)
- Hrepack: set default value for JPEG's quality factor to 75 to
prevent image distortion when the factor is not provided by user
(BMR - 2010/01/14)
Daily Test and Release
======================
Added h4vers and release scripts and Snapshot Release capability.
Support for new platforms and compilers
=======================================
Added support for 64-bit Mac Intel with gcc, gfortran and Intel C
and Fortran compilers.
Added support for AIX 6.1 using IBM XL C and Fortran compilers.
(EIP - 2010/1/29)
Bugs fixed since HDF4.2.4
=========================
Utilities
=========
- None
Library
=========
- The problem where incorrect result occurred when attempting
to retrieve the dimension scale's number type from a netCDF file
was fixed (bugzilla #1644.) (BMR - 2009/09/25)
- The problem where pieces of an image get written multiple times
at different locations in the 2-D array had been fixed. The
cause was the pointer to user's buffer was not advanced properly.
This was part of bugzilla 1547. (BMR - 2009/06/10)
- The problem which SDgetdimstrs failed if there are no attributes
attached to the dimension had been fixed. SDgetdimstrs now returns
the attribute strings containing '\0' for the first character, as
specified in the documentation. (BMR - 2009/08/28)
Configuration
=============
- The mfhdf/ncgen/Makefile.in now has $(EXEEXT) appended to the ncgen
program whenever it is referenced in a build rule dependency. This
fixes some compile problems on Cygwin, where the .exe is necessary.
(MAM - 2009/12/17).
- Configure will now fail if the yacc or flex utilities are not available
(as opposed to failing sometime during make when they are used).
(MAM - 2009/12/17).
- Configure will now properly check for the rpc library when on
Cygwin, and fail gracefully if it is not found. (MAM - 2009/12/17)
- Configure will no longer try to use a Fortran compiler to set up
aspects of the build environment when Fortran has been disabled, as
configure now deliberately sets the F77 environment variable to 'no'
when Fortran is disabled. This should no longer cause build problems
on Cygwin when no Fortran compiler is available. (MAM - 2009/12/14)
- './configure --help' will now correctly indicate that shared libraries
are disabled by default. (MAM - 2009/12/14)
Documentation
==============
The updated HDF Reference Manual is now available in HTML format.
Platforms tested
================
HDF 4.2.5 has been tested in the following platforms:
FreeBSD 6.3-STABLE i386 gcc 3.4.6 [FreeBSD] 20060305
(duty) f77 (gcc) 3.4.6
gcc (GCC) 4.4.4 20100126 (prerelease)
GNU Fortran (GCC) 4.4.4 20100126
(prerelease)
FreeBSD 6.3-STABLE amd64 gcc 3.4.6 [FreeBSD] 20060305
(liberty) f77 (gcc) 3.4.6
gcc (GCC) 4.4.4 20100126 (prerelease)
GNU Fortran (GCC) 4.4.4 20100126
(prerelease)
Linux jam 2.6.18-164.el5 #1 gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-46)
SMP i686 i386 G95 (GCC 4.0.3 (g95 0.92!) Jun 24 2009)
(jam) g77 (GCC) 3.4.6 20060404
pgcc and pgf90 8.0-5 32-bit target
on x86 Linux -tp penryn
Intel(R) C Compiler, Version 11.0
Intel(R) Fortran Compiler, Version 11.0
Linux 2.6.18-164.11.1.el5 #1 gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-46)
SMP x86_64 GNU/Linux G95 (GCC 4.0.3 (g95 0.92!) Jun 24 2009)
(amani) icc (ICC) 11.1 20090827
ifort (IFORT) 11.1 20090827
pgcc and pgf90 9.0-4 64-bit target
on x86-64 Linux -tp k8-64e
GNU Fortran (GCC) 4.1.2 20080704
(Red Hat 4.1.2-46)
SunOS 5.10 32- and 64-bit Sun C 5.9 SunOS_sparc Patch 124867-12
(linew) Sun Fortran 95 8.3 SunOS_sparc
Patch 127000-12
Linux 2.6.16.54-0.2.5 #1 Intel(R) C Compiler Version 10.1.017
Altix SMP ia64 Intel(R) Fortran Itanium(R) Version 10.1.017
(cobalt) SGI MPI 1.16
Xeon Linux 2.6.18-92.1.10.el5_lustre.1.6.6smp-perfctr
#2 SMP x86_64 Intel(R) C Compiler Version 10.0.026
(abe) Intel(R) Fortran Compiler Version 10.0.026
IA-64 Linux 2.4.21.SuSE_292.til1
ia64
(NCSA tg-login) Intel(R) C Compiler Version 8.1.037
Intel(R) Fortran Compiler Version 8.1.033
AIX 5.3 (32/64 bit) IBM XL C/C++ for AIX, V9.0
(LLNL Up) IBM XL Fortran for AIX, V11.1
AIX 6.1 (32/64 bit) IBM XL C/C++ for AIX, V10.1
(NCSA bp-login) IBM XL Fortran for AIX, V12.1
Windows XP Visual Studio 2005 (with Intel Fortran 9.1/10.1)
Visual Studio 2008 (with Intel Fortran 10.1)
cygwin (gcc 4.3.4)
Windows XP(64 bit) Visual Studio 2005 (with Intel Fortran 9.1/10.1)
Visual Studio 2008 (with Intel Fortran 10.1)
Windows Vista Visual Studio 2008 (with Intel Fortran 10.1)
Windows Vista(64 bit) Visual Studio 2008 (with Intel Fortran 10.1)
MAC OS X Intel 10.6.2 Darwin 10.2.0
Intel C icc (ICC) 11.1 20091130
Intel Fortran ifort (IFORT) 11.1 20091130
i686-apple-darwin10-gcc-4.2.1 (GCC) 4.2.1
GNU Fortran (GCC) 4.5.0 20090910
Linux 2.6.31.12-174.2.3.fc12.x86_64 #1 SMP
x86_64 GNU/Linux gcc (GCC) 4.4.2
(Fedora 12) gfortran GNU Fortran (GCC) 4.4.2 20091222
(Red Hat 4.4.2-20)
Linux 2.6.31-17-generic #54-Ubuntu SMP
x86_64 GNU/Linux gcc (GCC) 4.4.1
(Ubuntu 9.10) gfortran GNU Fortran (GCC) 4.4.1
Linux 2.6.31.8-0.1-desktop #1 SMP
x86_64 GNU/Linux gcc (GCC) 4.4.1
(OpenSuse 11.2) gfortran GNU Fortran (GCC) 4.4.1
Known problems
==============
o When building in AIX systems, if CC is xlc with -qlanglvl=ansi, configure
fails when checking for the jpeglib.h header due to the duplicated
macro definition of HAVE_STDLIB_H. This is because some newer builds
of jpeg library has HAVE_STDLIB_H defined in its jconfig.h header file.
Without the -qlanglvl=ansi, some older xlc (e.g., V7.0) still fails but
newer xlc (e.g., V9.0) passes. (AKC - 2010/02/17)
o When building on Linux/UNIX platforms, the szip shared library files must
be in the system library path. This can be done by adding a link to
the libsz.* files into the /usr/lib folder or by adding the library
location to the LD_LIBRARY_PATH environment variable.
Ex. export LD_LIBRARY_PATH=path_to_szip_lib:$LD_LIBRARY_PATH
Optionally, one can use the static szip library files by adding '-static'
to the CFLAGS environment variable.
o Existing data written by an HDF4 Library prior to HDF 4.2r2:
When a one-dimensional SDS and a dimension scale were created with
the same name, subsequent accesses to the dimension scale or to the
SDS might corrupt the data.
HDF4 Library Releases 4.2r2 and later do not allow this conflict to
occur. On the other hand, recent libraries are also unable to detect
such conflicts that already exist in a file. It is therefore STRONGLY
recommended to check for such name duplication before working with data
created with a pre-4.2r2 library.
The functions SDgetnumvars_byname and SDnametoindices are provided
to help detect such name conflicts and select the correct object to
access, respectively; see the HDF Reference Manual entries for
further details.
o This release does not support VMS systems.
o N-Bit compression is not supported with Fortran APIs.
o Using both fill-value and compression on SD datasets does not work.
o When using PGI compilers, make sure that the JPEG library is also compiled
with a PGI C compiler; linking with a JPEG library built with gcc causes
JPEG library tests to fail. To bypass the problem:
x Set LIBS flag to $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
where $PGI_JPEG_INSTALL_DIR points to the installation directory
for the PGI-compiled JPEG library:
setenv LIBS $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
x Use the --with-jpeg=$PGI_JPEG_INSTALL_DIR configure flag to
configure with the PGI-compiled JPEG library:
./configure --with-jpeg=$PGI_JPEG_INSTALL_DIR --with-zlib....
o In order for the API SDgetdatasize to get the correct compressed size
of the data, the dataset needs to be closed (SDendaccess) or read
(SDreaddata), after being written and before SDgetdatasize is called.
Appendix: List of the removed files
===================================
mfhdf/CHANGES
mfhdf/CUSTOMIZE
mfhdf/INSTALL
mfhdf/MANIFEST
mfhdf/ORIGIN
mfhdf/README
mfhdf/README.HDF
mfhdf/README.HDF.33
mfhdf/VERSION
mfhdf/macros.mk
mfhdf/mfhdf.mak
mfhdf/msoft.mk
mfhdf/c++/README
mfhdf/c++/example.c
mfhdf/c++/example.cc
mfhdf/c++/example.cdl
mfhdf/c++/expected
mfhdf/c++/nc.info
mfhdf/c++/nc.txn
mfhdf/c++/nctst.cc
mfhdf/c++/ncvalues.cc
mfhdf/c++/ncvalues.hh
mfhdf/c++/netcdf.cc
mfhdf/c++/netcdf.hh
mfhdf/fortran/fortc
mfhdf/fortran/fortc1.sed
mfhdf/fortran/fortc2.sed
mfhdf/fortran/ftest.lnk
mfhdf/fortran/msoft/
mfhdf/fortran/Linux.m4
mfhdf/fortran/README
mfhdf/fortran/aix.m4
mfhdf/fortran/common.m4
mfhdf/fortran/convex.m4
mfhdf/fortran/craympp.m4
mfhdf/fortran/descrip.mms
mfhdf/fortran/freebsd.m4
mfhdf/fortran/fujivp.m4
mfhdf/fortran/hpux.m4
mfhdf/fortran/irix.m4
mfhdf/fortran/msoft.m4
mfhdf/fortran/msoft.mk
mfhdf/fortran/osf.m4
mfhdf/fortran/solaris.m4
mfhdf/fortran/sunos.m4
mfhdf/fortran/ultrix.m4
mfhdf/fortran/unicos.m4
mfhdf/fortran/vax-ultrix.m4
mfhdf/fortran/vms.m4
mfhdf/libsrc/README
mfhdf/libsrc/cdftest.c
mfhdf/libsrc/cdftest.mak
mfhdf/libsrc/cdftest.project.hqx
mfhdf/libsrc/descrip.mms
mfhdf/libsrc/gen_sds_szipped.c
mfhdf/libsrc/hdftest.c
mfhdf/libsrc/hdftest.h
mfhdf/libsrc/hdftest.mak
mfhdf/libsrc/hdftest.project.hqx
mfhdf/libsrc/htons.mar
mfhdf/libsrc/mfhdflib.project.hqx
mfhdf/libsrc/msoft.mk
mfhdf/libsrc/ntohs.mar
mfhdf/libsrc/sds_szipped.dat
mfhdf/libsrc/tchunk.c
mfhdf/libsrc/tcomp.c
mfhdf/libsrc/tcoordvar.c
mfhdf/libsrc/tdatasizes.c
mfhdf/libsrc/tdim.c
mfhdf/libsrc/temptySDSs.c
mfhdf/libsrc/tfile.c
mfhdf/libsrc/tidtypes.c
mfhdf/libsrc/tncunlim.c
mfhdf/libsrc/tnetcdf.c
mfhdf/libsrc/trank0.c
mfhdf/libsrc/tsd.c
mfhdf/libsrc/tsdsprops.c
mfhdf/libsrc/tszip.c
mfhdf/libsrc/tunlim.c
mfhdf/libsrc/win32cdf.h
mfhdf/libsrc/win32cdf.mak
mfhdf/ncdump/ncdump.mak
mfhdf/ncdump/msoft.mk
mfhdf/ncdump/msofttab.c
mfhdf/ncdump/ctest0.mak
mfhdf/ncdump/ncdump.lnk
mfhdf/ncgen/test0.lnk
mfhdf/ncgen/ncgen.opt
mfhdf/ncgen/msoft.mk
mfhdf/ncgen/ncgen.mak
mfhdf/ncgen/ctest0.mak
mfhdf/ncgen/descrip.mms
mfhdf/port/COPYRIGHT
mfhdf/port/CUSTOMIZE
mfhdf/port/HISTORY
mfhdf/port/Makefile.am
mfhdf/port/Makefile.in
mfhdf/port/VERSION
mfhdf/port/aclocal.m4
mfhdf/port/configure
mfhdf/port/configure.in
mfhdf/port/depend
mfhdf/port/mast_mk.in
mfhdf/port/master.mk.in
mfhdf/port/uddummy.c
mfhdf/port/udposix.h.in
mfhdf/port/udposixh.in
mfhdf/port/which
hdf/COPYING
hdf/COPYRIGHT
hdf/README
hdf/README.33r4
hdf/fmpool/Makefile.in
hdf/fmpool/README
hdf/fmpool/cdefs.h
hdf/fmpool/compat.h
hdf/fmpool/config.guess
hdf/fmpool/config.sub
hdf/fmpool/configure
hdf/fmpool/configure.in
hdf/fmpool/fmpio.3
hdf/fmpool/fmpio.c
hdf/fmpool/fmpio.h
hdf/fmpool/fmpool.3
hdf/fmpool/fmpool.c
hdf/fmpool/fmpool.h
hdf/fmpool/fmptypes.h
hdf/fmpool/move-if-change
hdf/fmpool/queue.h
hdf/fmpool/test_fmpio.c
hdf/fmpool/tfmpio_read.c
hdf/fmpool/tfmpio_write.c
hdf/fmpool/config/fmpaix.h
hdf/fmpool/config/fmpalpha.h
hdf/fmpool/config/fmpconvex.h
hdf/fmpool/config/fmpdec.h
hdf/fmpool/config/fmpfbsd.h
hdf/fmpool/config/fmpfujivp.h
hdf/fmpool/config/fmphpux.h
hdf/fmpool/config/fmpia64.h
hdf/fmpool/config/fmpirix32.h
hdf/fmpool/config/fmpirix4.h
hdf/fmpool/config/fmpirix5.h
hdf/fmpool/config/fmpirix6.h
hdf/fmpool/config/fmplinux.h
hdf/fmpool/config/fmpmac.h
hdf/fmpool/config/fmpsolaris.h
hdf/fmpool/config/fmpsun.h
hdf/fmpool/config/fmpt3e.h
hdf/fmpool/config/fmpunicos.h
hdf/fmpool/config/mh-aix
hdf/fmpool/config/mh-alpha
hdf/fmpool/config/mh-convex
hdf/fmpool/config/mh-decstation
hdf/fmpool/config/mh-fbsd
hdf/fmpool/config/mh-fujivp
hdf/fmpool/config/mh-hpux
hdf/fmpool/config/mh-ia64
hdf/fmpool/config/mh-irix32
hdf/fmpool/config/mh-irix4
hdf/fmpool/config/mh-irix5
hdf/fmpool/config/mh-irix6
hdf/fmpool/config/mh-linux
hdf/fmpool/config/mh-mac
hdf/fmpool/config/mh-solaris
hdf/fmpool/config/mh-sun
hdf/fmpool/config/mh-t3e
hdf/fmpool/config/mh-unicos
hdf/src/hdf.bld
hdf/src/hdflib.project.hqx
hdf/src/hdfnof.bld
hdf/src/hdfnofw3.lbc
hdf/src/hdfnofwc.lbc
hdf/src/hdfw386.lbc
hdf/src/hdfwcc.lbc
hdf/src/makepc.386
hdf/src/makepc.msc
hdf/src/makepc.wcc
hdf/src/makewin.msc
hdf/src/win32hdf.mak
hdf/util/fp2hdf.mak
hdf/util/hdf24to8.mak
hdf/util/hdf2jpeg.mak
hdf/util/hdf8to24.mak
hdf/util/hdfcomp.mak
hdf/util/hdfed.mak
hdf/util/hdfls.mak
hdf/util/hdfpack.mak
hdf/util/hdftopal.mak
hdf/util/hdftor8.mak
hdf/util/hdfunpac.mak
hdf/util/jpeg2hdf.mak
hdf/util/makepc.386
hdf/util/makepc.msc
hdf/util/paltohdf.mak
hdf/util/r8tohdf.mak
hdf/util/ristosds.mak
hdf/util/vcompat.mak
hdf/util/vmake.mak
hdf/util/vshow.mak
hdf/test/MAKECOM.OLD
hdf/test/makepc.386
hdf/test/makepc.msc
hdf/test/makewin.msc
hdf/test/makewin.new
hdf/test/testhdf.386
hdf/test/testhdf.def
hdf/test/testhdf.lnk
hdf/test/testhdf.pc
hdf/test/testhdf.project.hqx
hdf/test/win32tst.mak
%%%4.2r4%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
HDF 4.2 Release 4
=================
January 25, 2009
INTRODUCTION
This document describes the differences between HDF 4.2r3 and HDF 4.2r4
It is written for people who are familiar with previous releases of HDF
and wish to migrate to HDF 4.2r4
The HDF 4.2r4 documentation can be found on the The HDF Group's FTP server:
ftp://ftp.hdfgroup.org/HDF/Documentation/
First-time HDF users are encouraged to read the HDF FAQ, which can be
reached from the HDF product home page:
http://hdfgroup.org/products/hdf4/
If you have any questions or comments, please see the HDF Support page:
http://hdfgroup.org/services/support.html
CONTENTS
- New features and changes
-- Configuration
-- Library
-- Utilities
- Support for new platforms and compilers
- Bugs fixed since HDF4.2r3
-- Utilities
-- Library
-- Configuration
- Documentation
- Platforms tested
- Known problems
New features and changes
========================
Configuration
=============
- Automake 1.10.1 used to generate Makefile.in files, and
Autoconf 2.61 used to generate configure script. MAM - 2008/10/09
- Libtool support (2.2.6a) has been added, and HDF4 shared C
libraries can now be built. To build, use the --enable-shared
configuration flag. This needs to be used in conjunction with
the --disable-fortran flag, as Fortran shared libraries are not
supported. Shared libraries are disabled by default.
MAM - 2008/10/09
- Added SZIP information to end of configure summary, which indicates
whether SZIP is present and, if SZIP is present, whether the SZIP
encoder is present. MAM - 2008/10/06
Library
=========
- Added new API SDgetdatasize to retrieve the compressed and original
sizes of an SDS' data. Its limitation is listed in the "Known
problems" section at the end of this document.
intn SDgetdatasize(int32 sdsid, int32* comp_size, int32* orig_size)
sdsid - IN: dataset ID
comp_size - OUT: size of compressed data
orig_size - OUT: size of original data
BMR - 2008/10/15
- The following Fortran APIs were added in this release:
sfgetname
sfgetnamelen
sfgmaxopenf
sfgnumopenf
sfrmaxopenf
sfidtype
sfgnvars_byname
sfn2indices
Please see HDF Reference Manual for functions description.
Note: These APIs are not available on Windows.
Utilities
=========
- hrepack output now includes dataset compression ratios.
PVN - 2008/10/30
- hdp now displays various parameters of Gzip, Szip, and Skipping
Huffman compressions when a dataset is compressed. (Bugzilla 1202)
BMR - 2008/10/03
Support for new platforms and compilers
=======================================
Linux 2.6.27 x86_64 Fedora 10 with GNU C and gfortran
Ubuntu 8.10 with GNU C and gfortran
OpenSuse 11.1 with GNU C and gfortran
Mac Intel with GNU C, gfortran, g95 and Intel 10.1 32-bit
C and Fortran compilers
Note: Only the 32-bit version of the Intel compiler is supported.
One has to run configuration scripts, which can be found under
the bin directories in the Intel compiler installation directory
tree (e.g., /opt/intel/cc/10.1.006/bin/iccvars.csh and
/opt/intel/fc/10.1.006/bin/ifortvars.csh), to enable the
32-bit version of the compiler before configuring and building HDF4.
Known problems:
Due to a known bug in the Intel 10.1 icc compiler, one has to use
-no-multibyte-chars flag with icc. O0 flag with ifort is required
to build Fortran APIs and tests. This restriction is probably due
to very old Fortran code and will be lifted for future releases.
Bugs fixed since HDF4.2r3
=========================
Utilities
=========
- hrepack previously failed to preserve unlimited dataset dimensions;
they are now preserved. PVN - 2008/11/19
Library
=========
- SDreaddata now checks for out-of-range values in the parameter
'stride' and fails when invalid values are given (Bugzilla 150.)
This bug was actually fixed right before the HDF4.2r2 release.
BMR - 2008/07/14
- Reading a record variable using nc API fills the buffer with fill
values up to the maximum number of records of all unlimited
dimension variables in the file, as in netCDF. It used to fail
before (Bugzilla 1378.) - BMR 2009/01/21
- When the file name is too long, some SD APIs caused a segmentation
fault (Bugzilla 1331.) This problem is now fixed. - BMR 2009/01/23
Configuration
=============
- hdiff_array.c now gets linked against libm.a library.
Documentation
==============
The updated HDF Reference Manual is now available in HTML format.
Platforms tested
================
HDF 4.2 Release 4 has been tested on the following platforms:
FreeBSD 6.3-STABLE i386 gcc 3.4.6 [FreeBSD] 20060305
(duty) g++ 3.4.6 [FreeBSD] 20060305
f77 (gcc) 3.4.6
gcc 4.2.5 20080702
g++ 4.2.5 20080702
gfortran 4.2.5 20080702
FreeBSD 6.3-STABLE amd64 gcc 3.4.6 [FreeBSD] 20060305
(liberty) g++ 3.4.6 [FreeBSD] 20060305
f77 (gcc) 3.4.6
gcc 4.2.5 20080702
g++ 4.2.5 20080702
gfortran 4.2.5 20080702
IRIX64 6.5 MIPSpro cc 7.4.4m
(ucar mop1 64 & n32) F90 MIPSpro 7.4.4m
Linux 2.6.18-92.1.22.el5xen gcc (GCC) 4.1.2 20071124
#1 SMP i686 i686 i386 gG95 (GCC 4.0.3 (g95 0.92!) July 1 2008)
(jam) g77 (GCC) 3.4.6 20060404
PGI C, Fortran, C++ 7.2-5 32-bit
Intel(R) C Compiler for 32-bit
applications, Version 10.1.018
Intel(R) Fortran Compiler for 32-bit
applications, Version 10.1.018
Linux 2.6.9-42.0.10.ELsmp #1 gcc (GCC) 3.4.6
SMP i686 i386 g++ (GCC) 3.4.6
(kagiso) G95 (GCC 4.0.3 (g95 0.92!) April 18 2007)
Linux 2.6.16.46-0.12-debug #1 Intel(R) C Compiler Version 10.0.025
SMP ia64 GNU/Linux Intel(R) Fortran Itanium(R) Version 10.0.025
(ucar hir1)
Linux 2.6.16.46-0.14-smp #1 gcc (GCC) 4.1.2 20070115 (SUSE Linux)
SMP x86_64 GNU/Linux G95 (GCC 4.0.3 (g95 0.92!) July 1 2008)
(smirom) Intel(R) C Compiler for Intel(R) EM64T Ver.
10.1.013
Intel(R) Fortran Intel(R) EM64T Ver.
10.1.013
PGI C, Fortran Version 7.2-1
for 64-bit target on x86-64
Linux 2.6.16.54-0.2.5 #1 Intel(R) C Compiler Version 10.1.017
Altix SMP ia64 Intel(R) Fortran Itanium(R) Version 10.1.017
(cobalt) SGI MPI 1.16
SunOS 5.10 32- and 64-bit Sun WorkShop 6 update 2 C 5.8
Patch 121015-06
(linew) Sun WorkShop 6 update 2 Fortran 95 8.2
Patch 121019-09
Xeon Linux 2.6.18-92.1.10.el5_lustre.1.6.6smp-perfctr
#2 SMP x86_64 Intel(R) C Compiler Version 10.0.026
(abe) Intel(R) Fortran Compiler Version 10.0.026
IA-64 Linux 2.4.21.SuSE_292.til1
ia64
(NCSA tg-login) Intel(R) C Compiler Version 8.1.037
Intel(R) Fortran Compiler Version 8.1.033
Windows XP Visual Studio 6.0
Visual Studio .NET (with Intel Fortran 9.1)
Visual Studio 2005 (with Intel Fortran 9.1/10.1)
Visual Studio 2008 (with Intel Fortran 10.1)
cygwin (gcc 3.4.4 and g95 0.90!)
Windows XP(64 bit) Visual Studio 2005 (with Intel Fortran 9.1/10.1)
Visual Studio 2008 (with Intel Fortran 10.1)
Windows Vista Visual Studio 2008 (with Intel Fortran 10.1)
cygwin (gcc 3.4.4 and g95 0.90!)
Windows Vista(64 bit) Visual Studio 2008 (with Intel Fortran 10.1)
MAC OS X Intel Darwin 9.4.0
i686-apple-darwin8-gcc-4.0.1 (GCC) 4.0.1
G95 (GCC 4.0.3 (g95 0.91!) Apr 24 2008)
gfortran GNU Fortran (GCC) 4.3.0 20070810
Intel 10.1 32-bit version
Linux 2.6.27.9-159.fc10.x86_64 #1 SMP
x86_64 GNU/Linux gcc (GCC) 4.3.2
(Fedora 10) gfortran GNU Fortran (GCC) 4.3.2 20081105
(Red Hat 4.3.2-7)
Linux 2.6.27-9-generic #1 SMP
x86_64 GNU/Linux gcc (GCC) 4.3.2
(Ubuntu 8.10) gfortran GNU Fortran (GCC) 4.3.2
Linux 2.6.27.7-9-default #1 SMP
x86_64 GNU/Linux gcc (GCC) 4.3.2
(OpenSuse 11.1) gfortran GNU Fortran (GCC) 4.3.2
Known problems
==============
o Existing data written by an HDF4 Library prior to HDF 4.2r2:
When a one-dimensional SDS and a dimension scale were created with
the same name, subsequent accesses to the dimension scale or to the
SDS might corrupt the data.
HDF4 Library Releases 4.2r2 and later do not allow this conflict to
occur. On the other hand, recent libraries are also unable to detect
such conflicts that already exist in a file. It is therefore STRONGLY
recommended to check for such name duplication before working with data
created with a pre-4.2r2 library.
The functions SDgetnumvars_byname and SDnametoindices are provided
to help detect such name conflicts and select the correct object to
access, respectively; see the HDF Reference Manual entries for
further details.
o This release does not support VMS systems.
o N-Bit compression is not supported with Fortran APIs.
o Using both fill-value and compression on SD datasets does not work.
o When using PGI compilers, make sure that the JPEG library is also compiled
with a PGI C compiler; linking with a JPEG library built with gcc causes
JPEG library tests to fail. To bypass the problem:
x Set LIBS flag to $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
where $PGI_JPEG_INSTALL_DIR points to the installation directory
for the PGI-compiled JPEG library:
setenv LIBS $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
x Use the --with-jpeg=$PGI_JPEG_INSTALL_DIR configure flag to
configure with the PGI-compiled JPEG library:
./configure --with-jpeg=$PGI_JPEG_INSTALL_DIR --with-zlib....
o In order for the new API SDgetdatasize to get the correct compressed size
of the data, the dataset needs to be closed (SDendaccess) or read
(SDreaddata), after being written and before SDgetdatasize is called.
o On a fedora x86_64 GNU/Linux machine with gfortran 4.3.2, the flag
-fno-range-check needs to be used to work around old code.
o On Windows with Visual Studio .NET 2003, a minor bug in the hdfnctest test
causes it to fail. The failure is non-critical, and so the test has been
disabled by default for all Windows compilers.
==========================================================================
%%%4.2r3%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
HDF 4.2 Release 3
=================
January 28, 2008
INTRODUCTION
This document describes the differences between HDF 4.2r2 and HDF 4.2r3.
It is written for people who are familiar with previous releases of HDF
and wish to migrate to HDF 4.2r3.
The HDF 4.2r3 documentation can be found on the THG ftp server:
ftp://ftp.hdfgroup.org/HDF/Documentation/
First-time HDF users are encouraged to read the HDF FAQ, which can be
reached from the HDF product home page:
http://hdfgroup.org/products/hdf4/
If you have any questions or comments, please see the HDF Support page:
http://hdfgroup.org/services/support.html
CONTENTS
- New features and changes
-- Configuration
-- Library
-- Utilities
- Support for new platforms and compilers
- Bugs fixed since HDF4.2r2
-- Utilities
-- Library
-- Configuration
- Documentation
- Platforms tested
- Known problems
New features and changes
========================
Configuration
=============
None
Library
=========
- Modified the HDF4 mfhdf library and configure to work in the
absence of the NetCDF-3 header files when the HDF4 library
is configured with the --disable-netcdf flag. This feature is
required when building the ESDIS Toolkit in the presence of the
NetCDF-3 library. In this case, the HDF4 file netcdf.h is used
to build the HDF4 libraries and is installed under the name
"hdf4_netcdf.h" to avoid a name clash with the NetCDF-3 file
netcdf.h.
EIP 2007-10-30
- Note that the previous change to SDnametoindex was backed out. It
only returns the first variable of the requested name, as did the
original version of this function. The variable can be an SDS or
a coordinate variable. With this behavior, if there is more than
one variable with the same name in the file, care must be taken to
retrieve the desired variable. Please see new APIs in the next
item for a way to handle non-uniquely named variables. The behavior
of SDnametoindex will be documented in FAQs, documentation, and the
newsletter.
BMR 2008-01-17
- Added new APIs to SD interface:
+ SDgetnumvars_byname: Given a name, returns the number of
variables in a file with that same name.
+ SDnametoindices: Given a name, returns a list of indices of
all the variables in a file with that same name.
With these new APIs, users can determine when an SDS name or
a coordinate variable's name is not unique, retrieve the named
variables, and examine them.
BMR 2008-01-17
Utilities
=========
None
Support for new platforms and compilers
=======================================
Support for Windows XP 64-bit with Visual Studio 2005 and
Intel Fortran compiler was added.
Bugs fixed since HDF4.2r2
=========================
Utilities
=========
None
Library
=========
None
Configuration
=============
- libhdf4.settings file was not installed by make install command;
fixed
EIP, 2007-10-09
Documentation
==============
Descriptions of the new functions SDgetnumvars_byname and SDnametoindices
have been added to the documentation.
Platforms tested
================
HDF 4.2 Release 3 has been tested on the following platforms:
AIX 5.2 (32/64 bit) xlc 8.0.0.11
(datstar) xlf 10.01.0000.0002
FreeBSD 6.2 (32- and 64-bit) gcc and f77 GNU 3.4.6
(duty and liberty) GNU Fortran (GCC) 4.2.3 20080123
IRIX64 6.5 MIPSpro cc 7.4.4m
(ucar mop1 64 & n32) F90 MIPSpro 7.4.4m
Linux 2.4.21-47.ELsmp #1 SMP gcc and g77 3.2.3
i686 i386 GNU/Linux
(osage)
Linux 2.6.9-42.0.10.ELsmp #1 gcc (GCC) 3.4.6
SMP i686 i386 G95 (GCC 4.0.3 (g95 0.91!) April 18 2007)
(kagiso) PGI C, Fortran 7.0-7 32-bit
icc (ICC) 9.1
Intel(R) Fortran Compiler for 32-bit
applications, Version 9.1
Linux 2.6.16.46-0.12-debug #1 Intel(R) C++ Version 10.0.025
SMP ia64 GNU/Linux Intel(R) Fortran Itanium(R) Version 10.0.025
(ucar hir1)
Linux 2.6.16.46-0.14-smp #1 Intel(R) C for Intel(R) EM64T Ver. 9.1.037
SMP x86_64 GNU/Linux Intel(R) Fortran Intel(R) EM64T Ver. 9.1.031
(smirom) gcc (GCC) 4.1.2 20070115 (SUSE Linux)
G95 (GCC 4.0.3 (g95 0.91!) Apr 19 2007)
Linux 2.6.5-7.283-rtgfx Altix Intel(R) C++ Version 9.0.032
SMP ia64 Intel(R) Fortran Itanium(R) Version 9.0.033
(cobalt)
SunOS 5.8 32- and 64-bit Sun WorkShop 6 update 2 C 5.3
(sol) Sun WorkShop 6 update 2 Fortran 77 5.3
SunOS 5.10 32- and 64-bit Sun WorkShop 6 update 2 C 5.8
Patch 121015-06
(linew) Sun WorkShop 6 update 2 Fortran 95 8.2
Patch 121019-09
IA-64 Linux 2.4.21.SuSE_292.til1
ia64
(NCSA tg-login) Intel(R) C++ Version 8.1.037
Intel(R) Fortran Compiler Version 8.1.033
Windows XP Visual Studio 6.0
Visual Studio .NET (with Intel Fortran 9.1)
Visual Studio 2005 (with Intel Fortran 9.1)
cygwin (gcc 3.4.4)
Windows XP(64 bit) Visual Studio 2005(with Intel Fortran 9.1)
Windows Vista Visual Studio 2005 (no fortran)
MAC OS X Intel Darwin 8.10.1
i686-apple-darwin8-gcc-4.0.1 (GCC) 4.0.1
g95 0.91
gfortran GNU Fortran (GCC) 4.3.0 20070518
Known problems
==============
o hdfcomp fails on HPUX 11.23 for the 64-bit version of the library.
o This release does not support VMS systems.
o N-Bit compression is not supported with Fortran APIs.
o Using both fill-value and compression on SD datasets does not work.
o For existing data prior to HDF 4.2r2, when a one-dimensional SDS has the
same name as the dimension scale, subsequent accesses to the dimension scale
or the SDS might produce undesired results. It is recommended to check
for name duplication first. See "New features and changes" section for
details.
o When using PGI compilers, make sure that the JPEG library is also compiled
with a PGI C compiler; linking with a JPEG library built with gcc causes
JPEG library tests to fail. To bypass the problem:
x Set LIBS flag to $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
where $PGI_JPEG_INSTALL_DIR points to the installation directory
for the PGI-compiled JPEG library:
setenv LIBS $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
x Use the --with-jpeg=$PGI_JPEG_INSTALL_DIR configure flag to
configure with the PGI-compiled JPEG library:
./configure --with-jpeg=$PGI_JPEG_INSTALL_DIR --with-zlib....
%%%4.2r2%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
HDF 4.2 Release 2
October 4, 2007
INTRODUCTION
This document describes the differences between HDF 4.2r1 and
HDF 4.2r2. It is written for people who are familiar with
previous releases of HDF and wish to migrate to HDF 4.2r2.
The HDF 4.2r2 documentation can be found on the THG ftp server
(ftp.hdfgroup.org) in the directory:
ftp://ftp.hdfgroup.org/HDF/Documentation/
First-time HDF users are encouraged to read the FAQ for this
release for more information about HDF. Also see the home page
for HDF at:
http://hdfgroup.org/
If you have any questions or comments, please send them to:
help@hdfgroup.org
CONTENTS
- New features and changes
-- Configuration
-- Library
-- Utilities
- Support for new platforms and compilers
- Bugs fixed since HDF4.2r1
-- Utilities
-- Library
- Documentation
- Platforms tested
- Known problems
New features and changes
========================
Configuration
=============
- The default installation directory name was changed from "NewHDF"
to "hdf4". EIP - 2007/08/06
- Introduced --enable-netcdf configure flag to provide an option to
enable/disable "HDF4-NetCDF"-like interfaces. By default, the
HDF4 netcdf feature is enabled. Use the --disable-netcdf
configuration flag to build HDF4 C and Fortran libraries that can
be used by NetCDF-3 applications. There is no longer a need to
specify the -DHAVE_NETCDF compilation flag. This feature is not
yet supported on Windows. EIP - 2007/09/05
- Updated versions of autotools. HDF4 now uses automake 1.10.0,
autoconf 2.61, and libtool 1.5.22. MAM - 2007/7/25.
- The Fortran part of the HDF4 library uses the F77_FUNC macro to
mangle names of C functions called from Fortran APIs. This should
help with HDF4 code portability to different Fortran compilers.
EIP - 2006/12/19
Library
=========
- SZIP compression is supported now for GR C interfaces
EIP - 2007/09/15
- Added new Fortran function hconfinf that determines whether the
SZIP compression method is present and whether encoding is available.
- Added support for SZIP compression in Fortran.
EIP - 2007/09/01
- The following APIs were added; see "Bugs fixed" section for details.
SDreset_maxopenfiles -- Resets the maximum number of files that can
be open at a time.
SDget_maxopenfiles -- Retrieves the current number of open files
allowed in HDF and the maximum number of open files allowed
on a system.
SDget_numopenfiles -- Returns the number of files currently open.
SDgetcompinfo -- Replaces SDgetcompress.
GRgetcompinfo -- Replaces GRgetcompress.
SDgetfilename -- Retrieves the name of the file, given its ID.
SDgetnamelen -- Retrieves the name length of the object, given its ID.
Note: Fortran wrappers for these new APIs are not available in this
release. BMR - 2007/09/23
- SDS and vgroup names are no longer limited to 64 characters
(Bugzilla #516). Note that when an older version of the library
reads a new name that is longer than 64 characters, the name will
contain some garbage after 64 characters. BMR - 2006/10/12
- User reported that SDreaddata went into an infinite loop when
reading some corrupted compressed data. This problem is fixed.
Two new error codes were added, consequently:
DFE_READCOMP - when the zlib function returns
Z_ERRNO (-1) or
Z_STREAM_ERROR (-2) or
Z_DATA_ERROR (-3) or
Z_MEM_ERROR (-4) or
Z_BUF_ERROR (-5)
DFE_COMPVERSION - when the zlib function returns
Z_VERSION_ERROR (-6)
Utilities
=========
- hrepack repacks by hyperslabs for large (non-compressed) datasets.
PVN - 2007/7/10
- hdiff enables reading by hyperslabs. This feature was added to
handle very large datasets, where available memory is an issue.
PVN - 2007/6/13
- hdiff now shows indices in multidimensional array notation.
PVN - 2007/4/5
- hdiff now shows the name of the array when printing differences.
PVN - 2007/4/5
- hdiff now shows a list of all objects in verbose mode.
PVN - 2007/4/5
- hdiff return code is now 1 if differences are found, 0 if no
differences are found, and -1 for an error. PVN - 2007/4/5
- hdiff has a new option, -p, for relative error. See usage.
PVN - 2007/4/5
- hrepack now prints chunk information along with the compression
type in verbose mode. PVN - 2007/4/5
Support for new platforms and compilers
=======================================
- Added support for gfortran and g95 on Mac Intel.
EIP 2007/09/14
- Added support for gfortran on FreeBSD for both 32- and 64-bit.
- Added support for FreeBSD on AMD64 with gcc compilers.
EIP 2007/05/24
- Added support for MAC OS X Intel with gcc and g95 compilers.
- Added support for SUNOS 5.10 on Intel with SUN compilers (32- and
64-bit modes). EIP 2006/12/14
- Added support for HPUX 11.23 (32- and 64-bit modes).
EIP 2006/12/19
Bugs fixed since HDF4.2r1
=========================
Utilities
=========
- hrepack: Repeated vgroup insertions (duplicated links) were not being
replicated. PVN - 2007/9/10
- hrepack: Improved performance for large number of SDSs, through the
elimination of redundant file open calls. PVN - 2007/4/5
- hrepack: Fixed a bug in the -t option so that it now accepts multiple
comma-separated names. PVN - 2007/4/5
- hrepack: Now duplicates dimension SDSs that are not accessed from any
other SDSs. PVN - 2007/4/5
- hrepack: Fixed a bug that caused the unchunking of a dataset when
uncompressing was requested. PVN - 2007/4/5
Library
=========
- Added display of the compression method to hdp dumpsds and dumpgr
(Bugzilla #130). BMR - 2005/4/4
- The current SDgetcompress and GRgetcompress APIs have severe flaws.
Two new APIs, SDgetcompinfo and GRgetcompinfo, were added to
provide better functionality and will eventually replace
SDgetcompress and GRgetcompress. BMR - 2005/4/4
- Applied user's patch to fix bug #602. BMR - 2005/4/23
- Added a switch ('u') to ncdump to replace nonalpha-numeric characters
with underscores. Thus, the SDS names won't be changed automatically
unless the user so requests (Access bug #934/Bugzilla #381).
BMR - 2005/7/17
- In HDF4.2r0, SDwritedata failed when the SDS had rank=0 (bug #1045).
This change was retracted; writing to an SDS with rank=0 is allowed
again. BMR - 2005/8/23
- When a dimension has the same name as an SDS, depending on the
order in which they were created, either the SDS or the dimension
will be corrupted if certain operations occur, such as a SDsetdimscale
or SDsetattr call to the dimension. With this bugfix, the current
situation can be summarized as below:
+ Data that has already been corrupted cannot be recovered.
+ For existing data that has not yet been corrupted, the problem
has been fixed for multi-dimensional SDSs only. If the SDS had
only one dimension, the results of subsequent accesses to the
dimension would still be unpredictable (Bugzilla #328).
BMR - 2005/8/23
+ For future data, the problem has been fixed (Bugzilla #624).
BMR - 2007/6/24
- Allowing the maximum number of open files to be increased revealed
a problem: having more than 255 files open will cause file
corruption (Bugzilla #440). Specifically, file number (255*m)+n
will overwrite file number n, where n is [0..255] and m is [1..p],
where (255*p) <= maximum system allowed. This problem is fixed.
In addition, a new API is added for convenience:
SDgetfilename -- retrieves the name of the file given its ID.
BMR - 2005/10/05
- Prior to this release, the maximum number of files that can be open
at the same time was only 32. This limit was implemented as a
defined constant in the library, which users could not change without
recompiling the library. In this release, if this limit is reached,
the library will increase it to the system limit, minus 3 to account
for stdin, stdout, and stderr. In addition, three APIs are added
for more flexibility (Bugzilla #396/Access bug #935):
SDreset_maxopenfiles -- Resets the maximum number of files
that can be open at a time.
SDget_maxopenfiles -- Retrieves the current number of open
files allowed in HDF and the maximum number of open
files allowed on a system.
SDget_numopenfiles -- Returns the number of files currently
open.
Note:
(1) Because there are also stdin, stdout, and stderr, the maximum
limit that can be set must only be (system limit) - 3.
(2) If the system maximum limit is reached, the library will
push the error code DFE_TOOMANY onto the error stack.
The user application can detect this after an SDstart fails.
BMR - 2005/10/21
- The problem where ncgen failed with "too many attributes" on
some user files is fixed (Bugzilla #373). BMR - 2005/10/28
- The problem where SDcheckempty returns "not empty" for empty
chunked and compressed datasets is fixed (Bugzilla #218).
BMR - 2005/10/31
- If a VSgetattr was called twice for an attribute, the second call
would fail (Bugzilla #486). This problem is fixed. BMR - 2005/12/30
- A bug with reading metadata in hdfimport is fixed (Bugzilla #558).
BMR - 2006/9/23
- The problem of writing to two unlimited 1-D arrays is fixed
(Access bug #525). BMR - 2006/11/11
Documentation
==============
Documentation contains multiple bug fixes and improvements.
Platforms tested
================
HDF 4.2 Release 2 has been tested on the following platforms:
AIX 5.3 (32/64 bit) xlc 7.0.0.0
(copper) xlf 9.1.0.3
FreeBSD 6.2 (32- and 64-bit) gcc and f77 GNU 3.4.6
(duty and liberty) GNU Fortran (GCC) 4.2.2 20070905
HP-UX B.11.23 (32- and 64-bit)HP aC++/ANSI C B3910B A.06.02
(sirius) HP F90 v3.1
IRIX64 6.5 MIPSpro cc 7.4.4m
(ucar mop1 64 & n32) F90 MIPSpro 7.4.4m
Linux 2.4.21-47.ELsmp #1 SMP gcc and f77 3.2.3
i686 i386 GNU/Linux
(osage)
Linux 2.6.9-42.0.10.ELsmp #1 gcc (GCC) 3.4.6
SMP i686 i386 G95 (GCC 4.0.3 (g95 0.91!) Nov 21 2006)
(kagiso) PGI C, Fortran, C++ 6.2-5 32-bit
icc (ICC) 9.1
Intel(R) Fortran Compiler for 32-bit
applications, Version 9.1
Linux 2.6.16.46-0.12-debug #1
SMP ia64 GNU/Linux Intel(R) C++ Version 10.0.025
(ucar hir1) Intel(R) Fortran Itanium(R) Version 10.0.025
Linux 2.6.16.46-0.14-smp #1 Intel(R) C++ for Intel(R) EM64T Ver. 9.1.037
SMP x86_64 GNU/Linux Intel(R) Fortran Intel(R) EM64T Ver. 9.1.031
(smirom) gcc (GCC) 4.1.2 20070115 (SUSE Linux)
G95 (GCC 4.0.3 (g95 0.91!) Apr 19 2007)
Linux 2.6.5-7.283-rtgfx Altix
SMP ia64 Intel(R) C++ Version 9.0
(cobalt) Intel(R) Fortran Itanium(R) Version 9.0
SunOS 5.8 32- and 64-bit Sun WorkShop 6 update 2 C 5.3
(sol) Sun WorkShop 6 update 2 Fortran 95 6.2
SunOS 5.10 32- and 64-bit Sun WorkShop 6 update 2 C 5.8
(linew) Sun WorkShop 6 update 2 Fortran 95 8.2
Patch 121019-06
IA-64 Linux 2.4.21.SuSE_292.til1
ia64 gcc (GCC) 3.2.2
(NCSA tg-login) Intel(R) C++ Version 8.0
Intel(R) Fortran Compiler Version 8.0
Windows XP Visual Studio 6.0
Visual Studio .NET (with Intel Fortran 9.1)
Visual Studio 2005 (with Intel Fortran 9.1)
cygwin (gcc 3.4.4)
Windows Vista Visual Studio 2005 (no fortran)
MAC OS X Intel Darwin 8.10.1
i686-apple-darwin8-gcc-4.0.1 (GCC) 4.0.1
g95 0.91
gfortran GNU Fortran (GCC) 4.3.0 20070518
Known problems
==============
o hdfcomp fails on HPUX 11.23 for the 64-bit version of the library
o This release does not support VMS systems.
o N-Bit compression is not supported with Fortran APIs.
o Using both fill-value and compression on SD datasets does not work.
o When a one-dimensional SDS has the same name as the dimension, subsequent
accesses to the dimension produce unpredictable results.
o When using PGI compilers, make sure that the JPEG library is also compiled
with a PGI C compiler; linking with JPEG built with gcc causes JPEG library
tests to fail. To bypass the problem:
x Set LIBS flag to $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
where $PGI_JPEG_INSTALL_DIR points to the installation directory
for the PGI-compiled JPEG library:
setenv LIBS $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
x Use the --with-jpeg=$PGI_JPEG_INSTALL_DIR configure flag to
configure with the PGI-compiled JPEG library:
./configure --with-jpeg=$PGI_JPEG_INSTALL_DIR --with-zlib....
%%%4.2r1%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
HDF 4.2 Release 1
February, 2005
INTRODUCTION
This document describes the differences between HDF 4.2r0 and
HDF 4.2r1. It is written for people who are familiar with
previous releases of HDF and wish to migrate to HDF 4.2r1
The HDF 4.2r1 documentation can be found on the NCSA ftp server
(ftp.ncsa.uiuc.edu) in the directory:
ftp://hdf.ncsa.uiuc.edu/HDF/Documentation/
First-time HDF users are encouraged to read the FAQ in this
release for more information about HDF. Users can also look
at the home page for HDF at:
http://hdf.ncsa.uiuc.edu/
If you have any questions or comments, please send them to:
hdfhelp@ncsa.uiuc.edu
CONTENTS
- New Features and Changes
-- Configuration
-- Library
-- Utilities
- Support for new platforms and compilers
- Bugs fixed since HDF4.2r1
- Documentation
- Platforms Tested
- Known problems
New Features and Changes:
========================
Configuration
=============
* By default HDF4 libraries and utilities are installed under
<source_dir>/NewHDF
12/01/2004 EIP
* Windows configuration, build and testing procedures have been changed.
Please see INSTALL_WINDOWS.txt file for more information
02/12/2005 EIP
Library
=========
* New API SDidtype was added to the library (bug #766)
01/23/2005 EIP for BMR
* HCgetcompress renamed to HCPgetcompress
* New API HCget_config_info added
* The default chunk cache size was changed for 2D and higher
chunks
* Pablo instrumentation was removed
Utilities
=========
* hdiff and hrepack are supported on Windows.
* Substantial performance improvements in hdiff and hrepack
Support for new platforms and compilers
=======================================
* Fortran IBM xlf v 8.1 and Absoft f95 version 8.2 compilers
are supported on Mac OSX.
12/07/2004 EIP
* Absoft Fortran compiler f95 version 9.0 is supported on Linux 2.4
12/07/2004 EIP
* PGI C and Fortran compilers are supported on Linux 2.4
* Intel C and Fortran compilers are supported on Linux 2.4
* AMD Opteron is supported
Bugs fixed since HDF4.2r0
=========================
* VERY IMPORTANT:
Data compressed with SZIP may be corrupted; fixed. For more
information see "HDF4.2r1 SZIP Release Notes" available at
http://hdf.ncsa.uiuc.edu/doc_resource/SZIP/SZIP_HDF4_2r1.pdf
02/12/2005 EIP
* Fortran couldn't read names with spaces when NetCDF interfaces
were used; fixed
02/12/2005 EIP
* Library failed to compile in presence of the NetCDF library; fixed
11/22/2004 EIP
* h4fc couldn't create object files; fixed
01/23/2005 EIP
* When rank of SDS is 0, some SD APIs give segmentation fault (bug 1045);
fixed
01/23/2005 EIP for BMR
* Some GR images with special elements are read in as duplicate
(bug 814); fixed
02/14/2005 BMR
* Many bugs fixed in hdiff and hrepack utilities
Documentation
==============
Documentation contains multiple bug fixes and improvements.
Platforms Tested
================
HDF 4.2 Release 1 has been tested on the following platforms:
AIX 5.1 (32 and 64-bit) xlc 6.0.0.6
xlf 8.1.1.6
AIX 5.2 (32 and 64-bit) xlc 6.0.0.8
xlf 8.1.1.7
Cray SV1 10.0.1.2 Cray Standard C Version 6.6.0.3.6
Cray Fortran: Version 3.6.0.3.1
Cray TS IEEE Cray Standard C Version 6.4.0.3
Cray Fortran: Version 3.4.0.0
FreeBSD 4.9 gcc 2.95.4
GNU Fortran 0.5.25
HP-UX B.11.00 HP C HP92453-01 A.11.01.20
HP F90 v2.4
HP ANSI C++ B3910B A.03.13
IRIX64 6.5 (64 & n32) MIPSpro cc 7.3.1.3m
F90 MIPSpro 7.3.1.3m
Linux 2.4.20.28 gcc 2.96, GNU Fortran 0.5.25,
Absoft Fortran 9.0
Intel(R) C++ and Fortran Compilers
Version 8.1
Linux 2.4.21-268-smp #1 SMP x86_64 (AMD)
gcc 3.3.1
GNU Fortran (GCC) 3.3.1
Intel(R) C++ and Fortran Compilers
Version 8.1
PGI C and Fortran Compilers Version 5.2-1
Linux 2.4.21-27.0.1.ELsmp #1 SMP
gcc 3.2.3
PGI C and Fortran Compilers Version 5.2-1
Linux 2.4.21-sgi303rp05012313_10138 (Altix)
Intel C++ and Intel Fortran Version 8.1
Linux 2.4.20-31.9smp_perfctr_lustre (IA-32)
Intel(R) C++ Version 8.0
Intel(R) Fortran Compiler Version 8.0
Linux 2.4.21.SuSE_241.bef1 (IA-64)
Intel(R) C++ Version 8.0
Intel(R) Fortran Compiler Version 8.0
OSF1 V5.1 Compaq C V6.5-303
HP Fortran V5.5A-3548
HP Fortran Compiler X5.5A-4085-48E1K
SunOS 5.7(32 and 64 bit) WorkShop Compilers 5.0 98/12/15 C 5.0
(Solaris 2.7)
WorkShop Compilers 5.0 99/09/16 FORTRAN 77 5.0 patch 107596-03
gcc 3.2.2
g77 GNU Fortran (GCC 3.2.2) 3.2.2
SunOS 5.8(32 and 64 bit) Sun WorkShop 6 update 2 C 5.3
(Solaris 2.8) Sun WorkShop 6 update 2 Fortran 77 5.3
SunOS 5.9 (32 and 64 bit) Sun C 5.6 compiler, Sun Fortran 95 8.0
Windows 2000 (NT5.0) MSVC++ 6.0
DEC Visual Fortran 6.0
Intel C and F90 compilers version 7.1
Windows XP MSVC++.NET, Intel Fortran 8.1 (static libraries only)
MAC OS X Darwin 7.7 gcc 3.3
IBM Fortran xlf 8.1
Absoft Fortran 8.2
Known problems
==============
o SZIP Library is not available for Crays SV1 and TS
Fortran APIs do not support SZIP compression.
o SZIP compression cannot be used with GR interfaces. For more information
see "HDF4.2r1 SZIP Release Notes" available at
http://hdf.ncsa.uiuc.edu/doc_resource/SZIP/SZIP_HDF4_2r1.pdf
o This release doesn't support VMS system.
o N-Bit compression is not supported with Fortran APIs.
o Using both fill-value and compression on SD datasets doesn't work.
o SDgetdimscale incorrectly returns FAIL and or returns incorrect data
when the associated SDS has the same name as the dimension.
o When using PGI compilers make sure that JPEG library is also compiled with
PGI C compiler; linking with JPEG built with gcc causes JPEG library tests
to fail. To bypass the problem
x Set LIBS flag to $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
where $PGI_JPEG_INSTALL_DIR points to the installation directory
for the PGI-compiled JPEG library:
setenv LIBS $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a
x Use --with-jpeg=$PGI_JPEG_INSTALL_DIR
configure flag to configure with the PGI-compiled JPEG library:
./configure --with-jpeg=$PGI_JPEG_INSTALL_DIR --with-zlib....
%%%4.2r0%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
HDF 4.2 Release 0
December 2003
INTRODUCTION
This document describes the differences between HDF 4.1r5 and
HDF 4.2r0. It is written for people who are familiar with
previous releases of HDF and wish to migrate to HDF 4.2r0
The HDF 4.2r0 documentation can be found on the NCSA ftp server
(ftp.ncsa.uiuc.edu) in the directory:
ftp://hdf.ncsa.uiuc.edu/HDF/Documentation/
First-time HDF users are encouraged to read the FAQ in this
release for more information about HDF. Users can also look
at the home page for HDF at:
http://hdf.ncsa.uiuc.edu/
If you have any questions or comments, please send them to:
hdfhelp@ncsa.uiuc.edu
CONTENTS
- New Features and Changes
- Support for new platforms
- Bugs fixed since HDF4.1r5
- Documentation
- Platforms Tested
- Known problems
New Features and Changes:
========================
o IMPORTANT: HDF4 HAS A NEW CONFIGURATION
ZLIB and JPEG libraries were removed from the HDF4 distribution source.
ZLIB and JPEG have to be installed on the system before HDF4 library
can be built or HDF4 precompiled binaries can be used.
Please read INSTALL in the top HDF4 directory for instructions
how to build the HDF4 library and applications.
o HDF4 has an optional SZIP compression method; in order to use SZIP compression,
SZIP library has to be installed on the system. Please refer to the INSTALL
file for instructions on how to build with/without the SZIP Library.
SZIP in HDF4 is free for non-commercial use;
see http://hdf.ncsa.uiuc.edu/doc_resource/SZIP/Commercial_szip.html
for information regarding commercial use.
For more information about SZIP compression
see http://hdf.ncsa.uiuc.edu/doc_resource/SZIP/ and
the "HDF4 Reference Manual" entries for the GRsetcompress and
SDsetcompress functions.
o IMPORTANT note about prebuild binaries:
NCSA precompiled binaries has SZIP compression method enabled for all platforms
except Crays T3E and SV1 and Linux 2.4 SuSE x86_64. To use the binaries download
the SZIP library from http://hdf.ncsa.uiuc.edu/doc_resource/SZIP/
o The following new tools have been added
hrepack
hdiff
hdfimport
See "HDF4 Reference Manual" in the HDF 4.2r0 documentation set for more
information.
o fp2hdf is removed. It is replaced with hdfimport.
o Helper scripts to facilitate HDF4 installation and compilation were added:
h4cc - to compile C application with the HDF4 Libraries
h4fc - to compiler Fortran applications with the HDF4 Libraries
h4redeploy - to fix binary installation
See "HDF4 Reference Manual" in the HDF 4.2r0 documentation set for more
information.
Support for new platforms
=========================
o HDF4 was ported to the following platforms
AIX 5.1 64-bit version
MacOSX
Linux 2.4 RH8 and RH9
Linux 2.4 RH8 64-bit, SuSE 64-bit
Linux 2.4 ia64
Linux 2.4 SGI (Altrix)
Bugs fixed since HDF4.1r5
=========================
1. "hdp dumpgr" and "hdp dumpsds" have two new options:
-g to suppress the data of global (or file) attributes
-l to suppress the data of local attributes
2. The problem where hdp failed on a very long file name has been
fixed. (bug #693)
3. The problem where VSinquire failed when being called on a vdata
that had no fields defined, has been fixed. (bug #626)
4. When the values of VGNAMELENMAX and VSNAMELENMAX are changed
the hdp output doesn't reflect the change. This problem is
now fixed. (bug #606)
5. hdp dumpvg sometimes failed when reading a file that had a vgroup
being inserted into another. This has been fixed. (bug #477)
6. hdf2gif failed when a user tried it on JPEG compressed images. (Bug #601).
The problem is now fixed. An error message is displayed if the image is not
8-bit. If the image is 24-bit, the message suggests using hdf2jpeg.
7. ncdump failed to read NetCDF files 3.5 when there was more than one variable
with unlimited dimensions. Fixed.
8. The NetCDF part of the HDF4 library was not ported to Compaq True64 system.
Fixed.
9. The hdp commands dumpsds, dumpgr, dumpvd, and dumpvg now display an
informative message when a non-HDF file is given as input. (Bug #817)
10. The compilation warnings and error on the macro HDFclose are fixed.
(Bug #818)
Documentation
==============
Entries for new utilities hdiff, hrepack, hdfimport and helper
scripts h4cc, h4fc, and h4redeply were added to the Reference Manual.
Platforms Tested
================
HDF 4.2 Release 0 has been tested on the following platforms:
AIX 5.1 (32 and 64-bit) xlc 6.0.0.2
xlf 8.1.1
Cray T3E sn6606 2.0.6.08 Cray Standard C Version 6.6.0.2
Cray Fortran Version 3.6.0.2
Cray SV1 sn9617 10.0.1.2 Cray Standard C Version 6.6.0.2
Cray Fortran Version 3.6.0.2
FreeBSD 4.9 gcc 2.95.4
g++ 2.95.4
HP-UX B.11.00 HP C HP92453-01 A.11.01.20
HP F90 v2.4
HP ANSI C++ B3910B A.03.13
IRIX64 6.5 (64 & n32) MIPSpro cc 7.3.1.3m
F90 MIPSpro 7.3.1.3m
Linux 2.4.20-20.7 (RH8) gcc 3.3.1
Intel(R) C++ Version 7.1
Intel(R) Fortran Compiler Version 7.1
Linux 2.4.20-20.9 (RH9) gcc 3.2.2
Linux 2.4.21-2.9.5ws x86_64 gcc version 3.2.3 20030502 (Red Hat Linux 3.2.3-16)
g77 based on gcc version 3.2.3
Linux 2.4.19-SMP #1 x86_64 gcc version 3.3.2 (SuSE Linux)
g77 version 3.3.2
OSF1 V5.1 Compaq C V6.4-014
Compaq Fortran V5.5-1877
SunOS 5.7(32 and 64 bit) WorkShop Compilers 5.0 98/12/15 C 5.0
(Solaris 2.7) WorkShop Compilers 5.0 98/10/25
FORTRAN 77 5.0
gcc 3.2.2
g77 GNU Fortran (GCC 3.2.2) 3.2.2
SunOS 5.8(32 and 64 bit) Sun WorkShop 6 update 2 C 5.3
(Solaris 2.8) Sun WorkShop 6 update 2 Fortran 77 5.3
IA-32 Linux 2.4.9-31pctr Intel(R) C++ Version 7.0
Intel(R) Fortran Compiler Version 7.0
IA-64 Linux 2.4.16 ia64 Intel(R) C++ Version 7.0
Intel(R) Fortran Compiler Version 7.0
IA-64 Linux 2.4.19-SMP Intel(R) C++ Version 7.1
Intel(R) Fortran Compiler Version 7.1
gcc 3.2
g77 GNU Fortran (GCC 3.2) 3.2
IA-64 Linux 2.4.21-sgi Intel(R) C++ Version 7.1
(Altrix) Intel(R) Fortran Compiler Version 7.1
Windows 2000 (NT5.0) MSVC++ 6.0
DEC Visual Fortran 6.0
Intel C and F90 compilers version 7.1
Windows XP MSVC++.NET
MAC OS X Darwin 6.8
gcc Apple Computer, Inc. GCC
version 1175, based on gcc version 3.1
Known problems
==============
o SZIP Library is not available for Crays SV1 and T3E
Fortran APIs do not support SZIP compression.
o NetCDF tests nctest (C) and ftest (Fortran) fail to read from NetCDF 3.5 files
o On Linux RH8 64-bit SZIP tests fail if library is compiled in production
mode. All tests pass in the debug mode.
o This release doesn't support VMS system.
o On Linux with gcc compilers Fortran NetCDF APIs cannot read attributes, variables,
and dimensions when name contain spaces.
o HDF4 Library cannot be built with PGI compilers.
o N-Bit compression is not supported with Fortran APIs.
o Using both fill-value and compression on SD datasets doesn't work.
o --prefix defines where the installation path is. This version has
the default set as /usr/local which is different from previous versions.
o New utilities hdiff and hrepack are not available for Windows 2000.
%%%4.2r0-Beta%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
ABOUT HDF 4.2 Release 0-Beta
September 2003
INTRODUCTION
This document describes the differences between HDF 4.1r5 and
HDF 4.2r0-Beta. It is written for people who are familiar with
previous releases of HDF and wish to migrate to HDF 4.2r0-Beta
The HDF 4.2r0-Beta documentation can be found on the NCSA ftp server
(ftp.ncsa.uiuc.edu) in the directory:
/HDF/pub/outgoing/hdf4/4.2-Beta/
First-time HDF users are encouraged to read the FAQ in this
release for more information about HDF. Users can also look
at the home page for HDF at:
http://hdf.ncsa.uiuc.edu/
If you have any questions or comments, please send them to:
hdfhelp@ncsa.uiuc.edu
CONTENTS
- New Features and Changes
- Platforms Tested
New Features and Changes:
========================
o ZLIB and JPEG libraries were removed from the HDF4 distribution source.
Please read INSTALL-4.2r0-Beta in the top HDF4 directory for instructions
how to build HDF4 Library and applications.
o HDF4 has an optional SZIP compression; please refer to the INSTALL-4.2r0-Beta
file for instructions how to build with/without the SZIP Library.
SZIP in HDF4 is free for non-commercial use;
see http://hdf.ncsa.uiuc.edu/doc_resource/SZIP/Commercial_szip.html
for information regarding commercial use.
For more information about SZIP compression
see http://hdf.ncsa.uiuc.edu/HDF4/doc_resource/SZIP/ and the "HDF4 Reference Manual"
entries for the GRsetcompress and SDsetcompress functions.
o The following new tools have been added
hrepack
hdiff
hdfimport
See "HDF4 Reference Manual" in the HDF 4.2r0-Beta documentation set for more
information.
o HDF4 was ported to the following platforms
AIX 5.1 64-bit version
MacOSX
Linux 2.4 RH8 and RH9
Please refer to the bugs_fixed.txt file for more details on bugs that were
fixed.
Platforms Tested:
================
HDF 4.2 Release 0-Beta has been tested on the following platforms:
FreeBSD 4.9
HP-UX B.11.00
AIX 5.1 (32 and 64-bit)
IRIX64 6.5 (-n32, -64)
Linux 2.4
Solaris 2.7, 2.8 (32 and 64-bit)
MacOSX
No precompiled binaries is available for this release.
%%%4.1r5%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
ABOUT HDF 4.1 Release 5
November 2001
INTRODUCTION
This document describes the differences between HDF 4.1r4 and
HDF 4.1r5. It is written for people who are familiar with
previous releases of HDF and wish to migrate to HDF 4.1r5.
The HDF 4.1r5 documentation can be found on the NCSA ftp server
(ftp.ncsa.uiuc.edu) in the directory:
/HDF/HDF/Documentation/HDF4.1r5/
First-time HDF users are encouraged to read the FAQ in this
release for more information about HDF. Users can also look
at the home page for HDF at:
http://hdf.ncsa.uiuc.edu/
If you have any questions or comments, please send them to:
hdfhelp@ncsa.uiuc.edu
CONTENTS
- New Features and Changes
- Platforms Tested
New Features and Changes:
========================
o The following Vdata routines were added:
VSsetblocksize/vsfsetblsz -- sets the block size of the
linked-block element.
VSsetnumblocks/vsfsetnmbl -- sets the number of blocks for
a linked-block element.
VSgetblockinfo/vsfgetblinfo -- retrieves the block size and the number
of blocks of a linked-block element.
o Two routines were added to get compression information for the SD and
GR interfaces, including chunked elements: SDgetcompress/sfgcompress
and GRgetcompress/mggcompress.
Note:
- For a JPEG image, GRgetcompress only returns the compression type, not
the compression information (i.e, quantity and force_baseline). This
information is not currently retrievable.
- Getting compression type for JPEG chunked images is not working yet.
o "hdp dumpgr" has a new option, -pd, to print palette data only. Also,
whenever option -p or -pd is given, only palettes are printed, and no
images or file attributes.
o A new FORTRAN function, heprntf (HEprint), was added. It takes two
arguments: file name and level. If the file name string has 0 length,
then error messages will be printed to standard output.
o On Windows, the unresolved symbol (error_top) error has been fixed when
calling HEclear and linking with the DLL. Users who want to use the HDF
DLL should define HDFAPDLL in their applications. Simply go to Project
Settings and add HDFAPDLL as the predefined constant.
o A memory leak in the netCDF portion of the HDF/mfhdf distribution
was fixed.
o The "#define NULL" was removed since ANSI C compilers are required to
define NULL.
o When using "hdp dumpgr", data was being printed in the range of 0-250
when it should have been between 0-168. This problem is now fixed.
Please refer to the bugs_fixed.txt file for more details on bugs that were
fixed.
Platforms Tested:
================
HDF 4.1 Release 5 has been tested on the following platforms:
Cray SV1 10.0.0.8
Cray T3E sn6711 2.0.5.55
Compaq Tru64 Unix (OSF1) 5.1
DEC Alpha/OpenVMS AXP 7.2-1
FreeBSD 4.4
HP-UX B.11.00
IBM SP 4.3
IRIX 6.5
IRIX64 6.5 (-n32, -64)
Linux 2.2.18smp
Solaris 2.7, 2.8
Windows NT/98/2000
For more information on the platforms that were tested and for
which we provide pre-compiled binaries, please refer to the following
web page (accessible from the HDF home page):
http://hdf.ncsa.uiuc.edu/platforms.html
Known problems:
Writing n-bit datasets from FORTRAN with the SD interface is not working.
SDgetchunkinfo does not return compression coding or modelling type.
Using both fill-values and compression on SD datasets is not currently
working, don't use one or the other.
Dumping compressed Vdatas with vshow or hdp is not working.
Reading or writing compressed images with the GR interface is not working.
%%%4.1r4%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
ABOUT HDF 4.1 Release 4
October 2000
INTRODUCTION
This document describes the differences between HDF 4.1r3 and
HDF 4.1r4. It is written for people who are familiar with
previous releases of HDF and wish to migrate to HDF 4.1r4.
The HDF 4.1r4 documentation can be found on the NCSA ftp server
(ftp.ncsa.uiuc.edu) in the directory:
/HDF/HDF/Documentation/HDF4.1r4/
First-time HDF users are encouraged to read the FAQ in this
release for more information about HDF. Users can also look
at the home page for HDF at:
http://hdf.ncsa.uiuc.edu/
If you have any questions or comments, please send them to:
hdfhelp@ncsa.uiuc.edu
CONTENTS
- New Features and Changes
- Platforms Tested
- Known Problems
New Features and Changes:
========================
This release focuses on new features and changes added to the
GR interface.
o Two new utilities have been added to HDF, gif2hdf and hdf2gif.
The gif2hdf utility will convert a GIF image into an HDF file
containing a GR image. The hdf2gif utility will convert an HDF GR
image into a GIF image.
o Chunking and chunking with compression have been added to the
GR interface.
o JPEG compression with the GR interface was not working properly.
This problem has been fixed.
Several hdp options have been added:
o Added -s option to dumpgr and dumpsds to allow printing data
as a stream instead of breaking the lines at 65 characters.
o Added option -c to dumpgr and dumpsds to allow printing clean output
for attributes with type DFNT_CHAR. With this option, hdp will print
space characters, such as horizontal tabs, CRs, and LFs, as they are
instead of "\digit" (still the default.) This option also prints "..."
for one or more null characters among the data.
o Added option -l to dumpgr to allow printing data in different interlace
modes.
Platforms Tested:
================
HDF 4.1 Release 4 has been tested on the following platforms:
Cray J90 (available after initial 4.1r4 release)
Cray T3E
DEC Alpha/Digital Unix
DEC Alpha/OpenVMS
Exemplar
FreeBSD
HP-UX
IRIX
IRIX64 (-n32, -64)
Linux
Solaris
Solaris x86
SP
Windows NT/98/2000
For more information on the platforms that were tested and for
which we provide pre-compiled binaries, please refer to the following
web page (accessible from the HDF home page):
http://hdf.ncsa.uiuc.edu/platforms.html
Known Problems:
==============
o The ncgen utility fails on the IBM SP.
%%%4.1r3%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
ABOUT HDF 4.1 Release 3
May 7, 1999
INTRODUCTION
This document describes the differences between HDF 4.1r2 and
HDF 4.1r3. It is written for people who are familiar with
previous releases of HDF and wish to migrate to HDF 4.1r3.
The release notes provide more in-depth information concerning
the topics discussed here. The HDF 4.1r3 documentation can be
found on the NCSA ftp server (ftp.ncsa.uiuc.edu) in the directory:
/HDF/HDF/Documentation/HDF4.1r3
First-time HDF users are encouraged to read the FAQ in this
release for more information about HDF. Users can also look
at the home page for HDF at:
http://hdf.ncsa.uiuc.edu/
If you have any questions or comments, please send them to:
hdfhelp@ncsa.uiuc.edu
CONTENTS
- New Features and Changes
- Platforms Tested
- Known Problems
- Acknowledgements
New Features and Changes:
========================
o HDF 4.1r2 was unable to properly read HDF SDSs created with HDF 3.3x.
It did not read the correct SDS names. This problem has been fixed.
o Many problems have been fixed with the GR interface, including the
following:
- The GR interface can now read compressed files created with the
DFR8 and DF24 interfaces, except for those which were compressed
with IMCOMP compression.
- The GR interface can read and write images compressed with RLE,
GZIP and Skipping Huffman compression methods.
- Palettes can now be written and read properly with the GR interface.
- 24-bit raster images can now be read by the GR interface.
o You can now create an SDS with a name up to 256 characters in length.
The previous limit was 64.
o HDF now supports IJP JPEG version 6b and Gzip version 1.1.3.
o Numerous hdp problems have been fixed, including the following:
- hdp no longer fails on an HDF file which contains a vdata that no
records have been written to.
- hdp no longer fails on the PC and Mactinosh dumping large SDSs.
- GR file attributes can now be displayed.
- A palette can now be dumped with the GR command.
o SDfileinfo no longer returns the wrong number of datasets for old
files created with the DFSD interface.
o This will be the last release that SunOS 4.1.4 is supported.
Check the ./bugs_fixed.txt for other changes that are not listed
here.
Platforms Tested:
================
HDF 4.1 Release 3 has been tested on the following platforms:
Cray J90
Cray T90 (CFP, IEEE)
Cray T3E
DEC Alpha/Digital Unix
DEC Alpha/OpenVMS
DEC Alpha NT
VAX OpenVMS
Exemplar
FreeBSD
HP-UX 10.2
IRIX 6.5
IRIX64 6.5 (-n32, -64)
Linux
Macintosh
Solaris
Solaris x86
SP
SunOS 4.1.4
Windows NT/95
For more information on the platforms that were tested and for
which we provide pre-compiled binaries, please refer to the following
web page (accessible from the HDF home page):
http://hdf.ncsa.uiuc.edu/platforms.html
Known Problems:
==============
o On Alpha OpenVMS version 6.2, the DF.OLB and MFHDF.OLB Libraries
should be created with optimization turned off. Otherwise hdftest
fails (the sfgichnk function returns incorrect information).
o On VAX Open VMS 6.2, the ncgen utility core dumps and an error occurs
when reading GR image data with user-defined fill values.
o If you encounter problems building on a platform, please be sure to
check the INSTALL file at the top of the HDF source tree, in case
these problems are documented in section 2.5, Platform-specific Notes.
o On the NT, the hdp utility fails in the debug version when using the
list command.
Acknowledgements:
================
Fortner Software LLC ("Fortner") created the reference implementations
for the Macintosh and Windows NT/95 of the HDF 4.1r3 library. For more
information, please refer to the macintosh.txt and windows.txt files in
the ./release_notes/ directory.
%%%4.1r2%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
ABOUT HDF 4.1 Release 2
March 16, 1998
INTRODUCTION
This document describes the differences between HDF 4.1r1 and
HDF 4.1r2. It is written for people who are familiar with
previous releases of HDF and wish to migrate to HDF 4.1r2.
The release notes provide more in-depth information concerning
the topics discussed here. The HDF 4.1r2 documentation can be
found on the NCSA ftp server (ftp.ncsa.uiuc.edu) in the directory:
/HDF/Documentation/HDF4.1r2
First-time HDF users are encouraged to read the FAQ in this
release for more information about HDF. Users can also look
at the home page for HDF at:
http://hdf.ncsa.uiuc.edu/
If you have any questions or comments, please send them to:
hdfhelp@ncsa.uiuc.edu
CONTENTS
- New Features and Changes
- Platforms Tested
- Known Problems
- Important Fixes
- Acknowledgements
New Features and Changes:
========================
o Data chunking is now supported with the GR interface. New routines
for creating and manipulating chunked GR images have been added. Please
refer to the ./release_notes/new_functions.txt file and HDF Reference
Manual for information on using chunked GRs.
o In previous releases, many C routines existed for which there were
no Fortran counterparts. With HDF 4.1r2, we have added a Fortran
routine for most C routines. Please check the
./release_notes/new_functions.txt file for a list of the new
functions added to HDF.
o This is the first release in which the Java Products (the Java-based
HDF Viewer (JHV) and the Java HDF interface (JHI)) are incorporated in
the HDF release itself. For information on the Java Products, please
refer to the HDF home page under Information about HDF
(http://hdf.ncsa.uiuc.edu/about.html).
o In the SD interface, HDF now defaults to ONLY storing the new version
of the dimension representation added in HDF 4.0r1.
When the dimension representation was changed in 4.0r1, the HDF library
defaulted to include both the new and old dimension representations in
an HDF file. Now, this new dimension representation is stored by default.
The SDsetdimval_comp function can be used to change the dimension
representation stored.
Following is a detailed description of the difference between the
new and old representations:
Prior to HDF 4.0r1, a vgroup was used to represent a dimension. The
vgroup had a single field vdata with a class of "DimVal0.0". The vdata
had <dimension size> number of records, with each record having a fake
value from 0, 1, 2 ... , (<dimension size> - 1). The fake values were
not really required and took up a large amount of space. For applications
that created large one dimensional array datasets, the disk space taken by
these fake values almost doubled the size of the HDF file. In order to omit
the fake values, the new version for a dimension vdata was implemented.
The new version uses the same structure as the old version. The
only differences are that the vdata has only 1 record with a value
of <dimension size> and that the vdata's class is "DimVal0.1", to
distinguish it from the old version.
o Platforms dropped with this release: Cray Y-MP, T3D, and Linux (a.out)
o Extensive changes have been made to the Reference Manual and User's
Guide. The updated Reference Manual is available with this release. The
updated User's Guide will be available in the near future.
Platforms Tested:
================
HDF 4.1 Release 2 has been tested on the following platforms:
Cray T90 (CFP, IEEE) IRIX 6.2
Cray T3E IRIX64 6.4 (-n32, -64)
DEC Alpha/Digital Unix Linux (elf)
Exemplar Solaris
FreeBSD Solaris x86
HP-UX 9.03 SP2
HP-UX 10.2 SunOS
IRIX 5.3
** The Windows NT/95, Macintosh, Dec Alpha OpenVMS and VAX OpenVMS
releases are not available with this release of HDF4.1r2. Separate
releases for these platforms will be available in the near future.
For more information on the platforms that were tested and for
which we provide pre-compiled binaries, please refer to the following
web page (accessible from the HDF home page):
http://hdf.ncsa.uiuc.edu/platforms.html
Known Problems:
==============
o Writing n-bit datasets from FORTRAN with the SD interface is not working.
o SDgetchunkinfo does not return compression coding or modeling type.
o Using both fill-values and compression on SD datasets is not currently
working; don't use one or the other.
o Dumping compressed Vdatas with vshow or hdp is not working.
o Reading or writing compressed images with the GR interface is not working.
o With the GR interface, you cannot create a raster image without writing data
to it.
Important Fixes:
===============
o HDF no longer core dumps when reading a NetCDF file.
o HDF now supports little-endian conversion for VAX and Dec
Alpha OpenVMS.
o The problems that occurred on the Cray with HDF 4.1r1 have
been corrected.
See the ./release_notes/bugs_fixed.txt file for more information
on bugs fixed in this release.
Acknowledgements:
================
Fortner Software LLC ("Fortner") created the reference implementations
for Macintosh and Windows NT/95 of the HDF 4.1r2 library, which will
be available in the near future. For more information, please refer to
the macintosh.txt and windows.txt files [in the ./release_notes/ directory].
(see above).
==================new_functions.txt==================================
This file contains a list of the new functions added with HDF 4.1r2.
The functions in parenthesis were already present in the HDF library,
and are included for clarity.
C FORTRAN Description
--------------------------------------------------------------------------------
(SDsetcompress) sfscompress compresses SDS
(SDwritechunk) sfwchnk writes the specified chunk of
NUMERIC data to the SDS
(SDwritechunk) sfwcchnk writes the specified chunk of
CHARACTER data to the SDS
(SDreadchunk) sfrchnk reads the specified chunk of
NUMERIC data to the SDS
(SDreadchunk) sfrcchnk reads the specified chunk of
CHARACTER data to the SDS
(SDsetchunk) sfschnk makes the SDS a chunked SDS
(SDsetchunkcache) sfscchnk sets the maximum number of chunks
to cache
(SDgetchunkinfo) sfgichnk gets info on SDS
(SDsetblocksize) sfsblsz sets block size
(SDisrecord) sfisrcrd checks if an SDS is unlimited
(GRsetcompress) mgscompress compresses raster image
GRsetchunk mgschnk makes a raster image a chunked
raster image
GRgetchunkinfo mggichnk gets info on a raster image
GRsetchunkcache mgscchnk sets the maximum number of chunks
to cache
(Hgetlibversion) hglibver gets version of the HDF Library
(Hgetfileversion) hgfilver gets version of the HDF file
Vdeletetagref vfdtr deletes tag/ref pair ( HDF object)
from a vgroup
(VSfindclass) vsffcls finds class with a specified
name in a vdata
VSdelete vsfdlte deletes a vdata
Vdelete vdelete deletes a vgroup
=====================================================================
%%%4.1r1%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
ABOUT HDF4.1 Release 1
February 21, 1997
INTRODUCTION
This document describes the differences between HDF 4.0r2 and
HDF 4.1r1. It is written for people who are familiar with
previous releases of HDF and wish to migrate to HDF 4.1r1.
The release notes provide more in-depth information concerning
the topics discussed here. The HDF 4.1r1 documentation can be
found on the NCSA ftp server (ftp.ncsa.uiuc.edu) in the directory:
/HDF/Documentation/HDF4.1r1
First-time HDF users are encouraged to read the FAQ in this
release for more information about HDF. Users can also look
at the home page for HDF at:
http://hdf.ncsa.uiuc.edu/
If you have any questions or comments, please send them to:
hdfhelp@ncsa.uiuc.edu
CONTENTS
- New Features and Changes
- Platforms Tested
- Known Problems
- Important Fixes
New Features and Changes:
========================
o Attributes are now supported in both the vdata and vgroup
APIs. In the vdata API, attributes can be attached to either
vdata fields or vdatas; in the vgroup API, attributes can be
attached to vgroups. This new functionality can also be used
to attach attributes to vdatas and vgroups created by earlier
versions of the HDF library. However, the old versions of
the HDF library cannot read the new version vdatas and vgroups.
A vdata/vgroup having attributes will become a new version
vdata/vgroup. For more information, please refer to the file
../release_notes/vattr.txt, the man pages for the new functions,
and the HDF 4.1 User's Guide.
o Data chunking is now supported in SD scientific data sets.
When data chunking is used, an n-dimensional SDS is stored
as a series of n-dimensional chunks, improving performance on
certain types of partial read operations.
New routines for creating and manipulating chunked SD
scientific data sets have been provided, and two preexisting
SD I/O routines, SDreaddata and SDwritedata, have also been
modified to work with chunked SDSs. For more information, please
refer to the file ../release_notes/sd_chunk_examples.txt, the man
page for sd_chunk, and the HDF 4.1 User's Guide.
o Due to certain limitations in the way compressed SDS datasets are stored,
data which has been compressed is not completely writable in ways that
uncompressed datasets are. The "rules" for writing to a compressed
dataset are as follows:
(1) Write an entire dataset that is to be compressed. i.e. build the
dataset entirely in memory, then write it out with a single call.
(2) Append to a compressed dataset. i.e. write to a compressed dataset
that has already been written out by adding to the unlimited
dimension for that dataset.
(3) For users of HDF 4.1, write to any subset of a compressed dataset
that is also chunked.
Please refer to the HDF 4.1 User's Guide for more information.
o HDF now creates free format FORTRAN include files. In order to make
FORTRAN 90 programs be able to use HDF include files (*.inc), HDF4.1r1
creates F90 versions of these files during the 'make' process on UNIX
platforms, by replacing 'C' or 'c' in column 1 with '!'. Continuation
lines in hdf.inc have been eliminated. The F90 version files are named
as hdf.f90, dffunc.f90 and netcdf.f90.
o Several performance improvements have been added. Test programs on SPARC
20/Solaris 2.5 show that when creating an hdf file with 2500 3D (10x10x10)
float32 SDSs, the program execution speed is improved by 2.5 - 4.8 times,
and SDend is faster by 4.3 - 20 times.
o A new function, SDsetfillmode, has been added. It can be used to prevent
SDwritedata from pre-filling the dataset with a user defined or default
fill value, so that better performance can be obtained.
o SGI has changed some compiler default settings in IRIX 6.2.
We decided to explicitly define the settings of various ABI related
options. For the 64 bit OS ("uname -s" returns IRIX64), HDF uses
"-64 -mips4" code. For the traditional 32 bit OS ("uname -s" returns
IRIX), HDF uses "-32 -mips2". To use n32 mode on IRIX64, HDF uses
"-n32 -mips3" code. Note that in the previous release (4.0r2), HDF
used only "-n32". In IRIX 6.1 and before, "-n32" defaulted to
"-mips4" code but in IRIX 6.2, it defaults to mips3 or mips4 code.
We decided to explicitly set it to "-n32 -mips3". Therefore,
applications linking with the HDF library must be compiled with
the same explicit ABI options.
o This will be the last release that we support the CM5.
HDF 4.1 Beta 1 USERS ONLY
-------------------------
o The SD chunking routine names were changed to be more consistent
with the SD interface. The names of the routines are now in lower
case, after the two initial "SD" characters. For example,
SDwriteChunk() has been changed to SDwritechunk().
o The _HDF_ENTIRE_VDATA variable has been changed to _HDF_VDATA.
For those users already using it, a macro called _HDF_ENTIRE_VDATA
has been added, which is defined as _HDF_VDATA.
o You can now create an empty compressed SDS.
Please refer to the ../release_notes/bugs_fixed.txt file for changes
in this release.
Platforms Tested:
================
HDF 4.1 Release 1 has been tested on the following platforms:
CM5 Parallel I/O, 4.1.3_U1
DEC Alpha/Digital Unix 3.2
DEC Alpha/OpenVMS AXP 6.2
DEC VAX OpenVMS 6.2
Exemplar 9.03
Free BSD 2.2
HP-UX 9.03
HP-UX 10.10
IRIX 5.3
IRIX 6.2_64
IRIX 6.2_n32
IRIX 6.4_64
IRIX 6.4_n32
Linux A.OUT 1.2.4
Linux ELF 2.0.27 (C only)
Macintosh PowerPC (C only)
SP2 4.1
Solaris 2.5
Solaris_x86 2.5 (C only)
SunOS 4.1.3
Windows NT/95 (C only)
Known Problems:
==============
o With the SD interface, you are unable to overwrite
existing compressed data, that is not stored in
"chunked" form. This is due to compression algorithms
not being suitable for "local" modifications in a compressed
datastream.
o There are no plans to add the DF24writeref function
to the DF24 interface. This function will be removed
from the documentation.
Important Fixes:
===============
o If you opened a file in Read Only mode with the SD interface
(using SDstart), it would create the file if the file did not
exist. This no longer occurs.
o HDF 4.0r2 did not recognize JPEG images created by HDF 3.3r4.
This has been fixed.
See the ../release_notes/bugs_fixed.txt file for more information
on bugs fixed in this release.
%%%4.1b1%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
ABOUT HDF4.1 Beta 1
December 6, 1996
INTRODUCTION
This document describes the differences between HDF 4.0r2 and
HDF 4.1b1. It is written for people who are familiar with
previous releases of HDF and wish to migrate to HDF 4.1b1.
The release notes provide more in-depth information concerning
the topics discussed here. For documentation, please refer
to the HDF 4.0r2 documentation which can be found on the NCSA
ftp server (ftp.ncsa.uiuc.edu) in the directory
/HDF/Documentation/HDF4.0r2.
First-time HDF users are encouraged to read the FAQ in this
release for more information about HDF. Users can also look
at the home page for HDF at:
http://hdf.ncsa.uiuc.edu/
If you have any questions or comments, please send them to:
hdfhelp@ncsa.uiuc.edu
CONTENTS
- New Features and Changes
- Platforms Tested
- Known Problems
- Important Fixes
New Features and Changes:
-------------------------
o Attributes are now supported in both the vdata and vgroup
APIs. In the vdata API, attributes can be attached to either
vdata fields or vdatas; in the vgroup API, attributes can be
attached to vgroups. This new functionality can be used
to attach attributes to vdatas and vgroups created by earlier
versions of the HDF library. However, the old versions of
the HDF library cannot read the new version vdatas and vgroups.
A vdata/vgroup having attributes will become a new version
vdata/vgroup. For more information, please refer to the file
../release_notes/vattr.txt, as well as the man pages for the
new functions.
o Data chunking is now supported in SD scientific data sets.
When data chunking is used, an n-dimensional SDS is stored
as a series of n-dimensional chunks, improving performance on
certain types of partial read operations.
New routines for creating and manipulating chunked SD
scientific data sets have been provided, and two preexisting
SD I/O routines, SDreaddata and SDwritedata, have also been
modified to work with chunked SDSs. For more information, please
refer to the file ../release_notes/sd_chunk_examples.txt, as
well as the man page for sd_chunk.
More information will be included in the HDF 4.1 documentation,
which will be available with the release of HDF 4.1.
o Due to certain limitations in the way compressed SDS datasets are stored,
data which has been compressed is not completely writable in ways that
uncompressed datasets are. The "rules" for writing to a compressed
dataset are as follows:
(1) Write an entire dataset that is to be compressed. i.e. build the
dataset entirely in memory, then write it out with a single call.
(2) Append to a compressed dataset. i.e. write to a compressed dataset
that has already been written out by adding to the unlimited
dimension for that dataset.
(3) For users of HDF 4.1, write to any subset of a compressed dataset
that is also chunked.
Please refer to the ../release_notes/comp_SDS.txt file for more information.
o A new file, ../release_notes/compile.txt, contains instructions on
compiling applications on the supported platforms. If you encounter
problems with it, please let us know at hdfhelp@ncsa.uiuc.edu.
o SGI has changed some compiler default settings in IRIX 6.2.
We decided to explicitly define the settings of various ABI related
options. For the 64 bit OS ("uname -s" returns IRIX64), HDF uses
"-64 -mips4" code. For the traditional 32 bit OS ("uname -s" returns
IRIX), HDF uses "-32 -mips2". To use n32 mode on IRIX64, HDF uses
"-n32 -mips3" code. Note that in the previous release (4.0r2), HDF
used only "-n32". In IRIX 6.1 and before, "-n32" defaulted to
"-mips4" code but in IRIX 6.2, it defaults to mips3 or mips4 code.
We decided to explicitly set it to "-n32 -mips3". Therefore,
applications linking with the HDF library must be compiled with
the same explicit ABI options.
Platforms Tested:
-----------------
HDF 4.1b1 has been tested on the following platforms:
DEC Alpha/Digital Unix 3.2
DEC Alpha/OpenVMS AXP v6.2
DEC VAX OpenVMS v6.2
Free BSD 2.2
HP-UX 9.03
IRIX 5.3
IRIX 6.2_64
IRIX 6.2_n32
Linux ELF 1.2.13 (C only)
Macintosh PowerPC (C only) (not ready yet)
SP2 4.1
Solaris 2.5
SunOS 4.1.3
Windows NT/95 (C only)
YMP 9.0.2asC
Known Problems:
---------------
o With the SD interface, you are unable to overwrite
existing compressed data, that is not stored in
"chunked" form. This is due to compression algorithms
not being suitable for "local" modifications in a compressed
datastream. For more information, please refer to
the ../release_notes/comp_SDS.txt file.
o With 4.0r1p1, you could type "hdp list -a <HDF file>
to get a list of the file attributes associated with
a file. This does not currently work.
o There are no plans to add the DF24writeref function
to the DF24 interface. This function will be removed
from the documentation.
o When running "make test" on OpenVMS, Test 3 (float32) of the
chunking tests fails, and has therefore been commented out.
o When running the tests on Window NT/95, Test 2 (uint16) of the
chunking tests fails, and will be commented out.
Important Fixes:
----------------
o If you opened a file in Read Only mode with the SD interface
(using SDstart), it would create the file if the file did not
exist. This no longer occurs.
o HDF 4.0r2 did not recognize JPEG images created by HDF 3.3r4.
This has been fixed.
See the ../release_notes/bug_fixed.txt file for more information
on bugs fixed in this release.
%%%4.0r2%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
ABOUT HDF4.0 Release 2
July 19, 1996
INTRODUCTION
This document describes the differences between HDF 4.0r1p1 and
HDF 4.0r2. It is written for people who are familiar with
previous releases of HDF and wish to migrate to HDF 4.0r2.
The documentation and release notes provide more in-depth
information concerning the topics discussed here. The HDF 4.0
documentation can be found on the NCSA ftp server in the
directory /HDF/Documentation/HDF4.0/Users_Guide.
First-time HDF users are encouraged to read the FAQ in this
release for more information about HDF. Users can also look
at the home page for HDF at:
http://hdf.ncsa.uiuc.edu/
If you have any questions or comments, please send them to:
hdfhelp@ncsa.uiuc.edu
CONTENTS
- New Features and Changes
- Platforms Tested
- Known Problems
New Features and Changes:
-------------------------
o HDF now supports unlimited number of access IDs and files IDs.
o The vdata field size limit has been increased from 32000 to 65535.
o The hdp utility has been updated to:
- view a GR object
- recognize the new compression methods
- view descriptive annotations
- display the library version of the HDF file
o SDsetattr and GRsetattr now check for both MAX_ORDER and
MAX_FIELD_SIZE.
o The handling of DFNT_CHAR in all Fortran interfaces has been
cleaned up. See release_notes/Fortran_APIs.txt for more
information.
o When appending compressed data onto the end of an unlimited
dimension SDS, the SD interface no longer writes the fill-values
in locations where they will immediately be over-written by data.
This was done for the compression layer, but has the added
enhancement of improving performance.
o On the Cray, there were boundary problems when foreign data did not
start from the 64-bit boundary. This has been fixed.
o There are no longer the following name collisions with the HDF
libraries:
- AVS (HPread, HPwrite)
- Windows SDK (_hread)
- ODL library (_HDF_<constant>)
o The 32-bit mode for IRIX 6.1 previously used the '-32' option which
produces mips1 code. It has been changed to use '-n32' which
produces mips4 code. This runs faster on the Power Challenges.
Users who must use the '-32' option can link their code with
the IRIX 5.3 HDF library.
o The compression problems have been fixed when using HDF on IRIX 6.1
with the -n32 (see Known Problems below).
o The zlib and jpeg libraries have been updated. The versions included
with HDF 4.0 Release 2 are:
zlib version 1.0.2
jpeg version 6a (7-Feb-96)
o The hdfls utility has been updated to:
- support the new compression modes
- display the library version of the HDF file
o Support for the 16-bit architecture has been pulled out of HDF.
o The directories separator in the directory variable used by the
function HXsetdir (Fortran equivalent: hxsdir) is the verticle bar
('|') now. It used to be the colon (':') symbol, but a colon is
a legal symbol for a file pathname in the MacOS system.
o The code has been rearranged so that most applications' binaries
will be smaller.
o A new routine, VSfpack(), has been added. Please see the HDF man
page on how to use this routine.
o A new routine, GRluttoref(), has been added. Please see the HDF man
page on how to use this routine.
o Several internal problems have been fixed with the GR interface.
Changes in Compiling the Source Code:
o A new compile option, '-DHAVE_NETCDF', has been added, to avoid conflicts
in linking the HDF/MFHDF library with the original netCDF library.
This is only available for the C-interface. However, keep in
mind that you cannot read/write HDF files using the netCDF libraries.
See section 2.4.3.2 in the INSTALL file for more information.
o When compiling and installing HDF, the default location to place the
binaries, has been changed from /usr/local/bin to NewHDF in the
source directory. For example, assuming the library source is loaded
at /usr/local/src/hdf, the following commands will result in the HDF
binaries being placed in the directory /usr/local/src/hdf/dev/NewHDF.
cd dev
./configure -v
make
make test
make install
o The Fortran test output has been cleaned up and shortened, when
running "make test". Previously, the Fortran tests on the hdf/
side consisted of multiple Fortran programs invoked by a C frontend.
The test programs were changed to subroutines and combined as one
Fortran program. The C frontend was also changed to produce a
'directive' file, called fortest.arg, which contains directives to
run the Fortran test program.
Platforms Tested:
-----------------
HDF 4.0r2 has been tested on the following platforms:
AIX Linux ELF
C90 MAC
CM5 SP2 (single node)
Digital Unix 3.2 Solaris_2.4
Exemplar 9.03 Solaris 2.5
Free BSD Solaris_x86 2.4 (C only)
Fujitsu (C only) SunOS 4.1.4
HP-UX T3D (C only)
IRIX 6.1 w/-n32 bit option VMS
IRIX 6.1 w/-64 bit option Windows NT/95
IRIX 5.3 YMP
Linux A.OUT
Known Problems:
---------------
o On the SunOS platform, there is a bug when using sfscal()/sfgcal()
routines with gcc and f77.
o On the VMS platform, there is a bug with float64 data.
o For IRIX 6.1, the stdio.h file gives a false warning message if both
the '-n32' and '-ansi' options are used for the C compiler. We have
temporarily removed the '-ansi' option from our autoconfiguration
for the Irix6_32 system, to avoid these messages. We have verified
that the culprit in stdio.h has been corrected in IRIX 6.2, and plan
to put the '-ansi' option back in our next release.
o The compression tests produce errors for FLOAT32 data if the '-O'
option is used on IRIX 6.1, for both the '-64' bit and '-n32'
bit modes. It did not produce errors when using the '-32' bit
option or when not using the '-O' option. We are unsure whether the
errors are due to the compression code or the IRIX C optimizer. For
now, we have chosen to compile the HDF library without the '-O' option,
while we investigate the problem.
%%%4.0r1%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
ABOUT HDF4.0 Release 1
February 7, 1996
INTRODUCTION
This document describes the differences between HDF4.0r1 and
HDF3.3r4. It is written for people who are familiar with
previous releases of HDF and wish to migrate to HDF4.0r1.
The documentation and release notes provide more in-depth
information concerning the topics discussed here. The HDF 4.0
documentation can be found on the NCSA ftp server in the
directory /HDF/Documentation/HDF4.0/Users_Guide. For more
history behind the implementation of the items listed here,
refer to the ABOUT_4.0.alpha, ABOUT_4.0b1 and ABOUT_4.0b2 files.
First-time HDF users are encouraged to read the FAQ in this
release for more information about HDF. Users can also look
at the home page for HDF at:
http://hdf.ncsa.uiuc.edu/
If you have any questions or comments, please send them to:
hdfhelp@ncsa.uiuc.edu
CONTENTS
- Important Changes (that will affect you)
- New Features and Changes
- Changes in Utilities
- Known Problems
Important Changes:
-----------------
1. Several changes have been made to the libraries in HDF4.0
which affect the way that users compile and link their
programs:
* The mfhdf library has been renamed to libmfhdf.a from
libnetcdf.a in previous releases.
* HDF 4.0 libraries now use v5 of the Independent JPEG Group
(IJG) JPEG file access library.
* Gzip library libz.a is added in HDF4.0r1, in order to
support "deflate" style compression of any object in
HDF files.
Due to these changes, users are required to specify four
libraries when compiling and linking a program: libmfhdf.a,
libdf.a, libjpeg.a and libz.a, even if your program
does not use JPEG or GZIP compression. For example:
For C:
cc -o myprog myprog.c -I<path of include files> \
<path of libmfhdf.a> <path of libdf.a> \
<path of libjpeg.a> <path of libz.a>
or
cc -o myprog myprog.c -I<path of include files> \
-L<path of libraries> -lmfhdf -ldf -ljpeg -lz
For FORTRAN:
f77 -o myprog myprog.f <path of libmfhdf.a> \
<path of libdf.a> <path of libjpeg.a> \
<path of libz.a>
or
f77 -o myprog myprog.f -L<path of libraries> \
-lmfhdf -ldf -ljpeg -lz
NOTE: The order of the libraries is important: libmfhdf.a
first, then libdf.a, followed by libjpeg.a and libz.a.
This is also discussed in Items 1, 2, and 3 of the New
Features and Changes section of this document.
2. The HDF 4.0 library will ONLY compile with ANSI C compilers.
See Item 4 in the New Features and Changes section of this
document for more information.
3. The HDF library and netCDF library on Unix systems can now be
automatically configured and built with one command. See Item 5
in the New Features and Changes section of this document for more
information.
4. In HDF 4.0, the FORTRAN programs dffunct.i and constant.i
have been changed to dffunct.inc and hdf.inc. See Item 16 in
the New Features and Changes section of this document for more
information.
5. Platforms tested on: IRIX (5.3, 6.1 (32 bit and 64 bit)),
SunOS 4.1.4, Solaris (ver 2.4, 2.5), Solaris x86,
HP-UX, Digital Unix, AIX, LINUX (A.OUT), CM5, YMP,
FreeBSD, C90, Exemplar, Open VMS, and SP2 (single node only).
HDF 4.0 is not yet available on the Macintosh for HDF4.0r1.
6. The HDF 4.0 binaries for each tested platform are available.
Unix binaries are located in the bin/ directory. Binaries for
Windows NT are located in the zip/ directory.
New Features and Changes:
------------------------
1. Changes to the mfhdf library
The mfhdf library has been renamed to libmfhdf.a from libnetcdf.a
in previous releases. To link a program with HDF4.0r1
libraries, four libraries are required: libmfhdf.a, libdf.a,
libjpeg.a and libz.a.
See Item 1 of 'Important Changes' for examples of how you would
compile and link your programs.
2. JPEG Group v5b library
HDF Version 4.0 libraries now use v5 of the Independent
JPEG Group (IJG) JPEG file access library.
The JPEG library will need to be linked with user's
applications whether they are compressed with JPEG or not.
See Item 1 of 'Important Changes' for examples of how you would
compile and link your programs.
3. Gzip library added
New with this release is support for gzip "deflate" style
compression of any object in an HDF file. This is supported
through the standard compression interface function calls
(HCcreate, SDsetcompress, GRsetcompress). The ABOUT_4.0b2
file contains additional information on this.
See Item 1 of 'Important Changes' for examples of how you would
compile and link your programs.
4. ANSI C only
As was previously noted in the HDF newsletters, this release
of the HDF library will compile only with ANSI C compilers.
This shift to ANSI C compliance has been accompanied by a large
clean up in the source code. An attempt has been made to remove
all warnings and informational messages that the compilers on
supported platforms occasionally emit, but this may not be
completely clean for all user sites.
5. Auto configuration
Both the HDF library and netCDF library on Unix systems now use
the same configure script and can be configured uniformally with
one command. See the README and the INSTALL files at the top
level of HDF4.0r1 for detailed instructions on configuration and
installation.
A consequence of the auto configuration is that on UNIX systems
without FORTRAN installed, the top level config/mh-<sys> will
need to have the 'FC' macros defined to "NONE" for correct
configuration.
6. New version of dimension record
In HDF4.0b1 and previous releases of the SDS interface, a vgroup
was used to represent a dimension. The vgroup had a single field
vdata with a class of "DimVal0.0". The vdata had <dimension size>
number of records, with each record having a fake value from
0, 1, 2 ... , (<dimension size> - 1). The fake values were not
really required and took up a large amount of space. For
applications that created large one dimensional array datasets, the
disk space taken by these fake values almost doubled the size of the
HDF file. In order to omit the fake values, a new version of
dimension vdata was implemented.
The new version uses the same structure as the old version. The
only differences are that the vdata has only 1 record with a value
of <dimension size> and that the vdata's class is "DimVal0.1", to
distinguish it from the old version.
No change was made in unlimited dimensions.
Functions added to support this are:
- SDsetdimval_comp -- sets backward compatibility mode for a
dimension. The default mode is compatible in HDF4.0r1, and
will be incompatible in HDF4.1. See the man page of
SDsetdimval_comp(3) for detail.
- SDisdimval_bwcomp(dimid) -- gets the backward compatibility
mode of a dimension. See the man page of SDisdimval_bwcomp(3)
for detail.
7. Reading CDF files
With HDF 4.0 limited support for reading CDF files was added to
the library. This support is still somewhat in the development
stage and is therefore limited.
To begin with, unlike the netCDF merger, the CDF API is not
supported. Rather, the SD and netCDF APIs can be used to access
information pulled out of CDF files.
The type of files supported are limited to CDF 2.X files. The
header information is different between CDF 1.X and 2.X files. In
addition, all of the files must be stored as single-file CDFs in
network encoding.
If there is user demand, and support, the types of CDF files
that are readable may be increased in the future.
8. Parallel I/O interface on CM5
An extension using the parallel IO in CM5 has been added to
the SDS interface. Initial tests have resulted in about
25 MBytes/second IO throughput using the SDA (Scalable
Disk Array) file system. The library provides interfaces
for both C* and CMF programming languages. The ABOUT_4.0.alpha
file has more information concerning this.
Users will find some examples in the directory
mfhdf/CM5/Examples.
The parallel I/O interface stores scientific datasets in
external files. New options have been added to hdfls and
hdfpack to handle them. A new utility, hdfunpac, was
created for external files handling, too.
9. Support for SGI Power Challenge running IRIX6.1
Power Challenge is now supported, both in the native 64-bit
and the 32-bit objects modes. Note that the Power Challenge
native 64 bits objects use 64 bits long integers. Users should
be careful when using the netcdf interface. They should declare
their variables as "nclong", not "long".
10. Multi-file Annotation Interface (ANxxx)
The multi-file annotation Interface is for accessing
file labels and descriptions, and object labels and
descriptions. It allows users to keep open more than
one file at a time, and to access more than one
annotation at a time. It also allows multiple labels
and multiple descriptions to be applied to an HDF object
or HDF file.
11. Multi-file Raster Image (GRxxx) interface
The new Generic Raster (GR) interface provides a set of
functions for manipulating raster images of all kinds.
This interface allows users to keep open more than one
file at a time, and to "attach" more than one raster
image at a time. It supports a general framework
for attributes within the RIS data-model, allowing
'name = value' style metadata. It allows access to
subsamples and subsets of images.
The GRreqlutil and GRreqimageil functions allow for different
methods of interlacing images in memory. The images are
interlaced in memory only, and are actually written to disk in
"pixel" interlacing.
12. Compression for HDF SDS
Two new compression functions have been added to the SD
interface for HDF 4.0: SDsetcompress and SDsetnbitdataset.
SDsetcompress allows users to compress a scientific dataset
using any of several compression methods. Initially three
schemes, RLE encoding, an adaptive Huffman compression
algorithm, and gzip 'deflation' compression are available.
SDsetnbitdataset allows for storing a scientific dataset
using integers whose size is any number of bits between 1 and
32 (instead of being restricted to 8, 16 or 32-bit sizes).
Access to the data stored in an n-bit data item is transparent
to the calling program. The ABOUT_4.0.alpha file has an in-depth
description concerning this ("n-bit SDS" listed under Item 2).
13. External Path Handling
New functions have been added to allow applications to
specify directories to create or search for external
files.
- HXsetcreatedir (hxscdir for FORTRAN)
- HXsetdir (hxsdir for FORTRAN)
14. I/O performance improvement
HDF 4.0 unofficially supports file page buffering. With HDF 4.1
it will be officially supported. The file page buffering allows
the file to be mapped to user memory on a per page basis i.e. a
memory pool of the file. With regards to the file system, page
sizes can be allocated based on the file system page-size or
in a multiple of the file system page-size. This allows for fewer
pages to be managed as well as accommodating the user's file usage
pattern. See the top level INSTALL file and the
release_notes/page_buf.txt file for creating the library with
this support and using it.
15. Improvement in memory usage and general optimizations
Considerable effort was put into this release (since the b2
release) to reduce the amount of memory used per file and by the
library in general. In general terms, we believe that the library
should have at least half as large of a memory footprint during
the course of its execution and is more frugal about allocating
large chunks of memory.
Much time was spent optimizing the low-level HDF routines for this
release to be faster than they have been in the past also.
Applications which make use of files with many (1000+) datasets
should notice significant improvements in execution speed.
16. In hdf/ there are two files for FORTRAN programs to include
the values and functions defined in HDF. They were
originally named as constant.i and dffunct.i. The extension .i
caused problems on some machines since *.i is used by cc as
an "intermediate" file produced by the cpp preprocessor. In
HDF 4.0 dffunct.i has been changed to dffunct.inc, and constant.i
has been changed to hdf.inc. Users' existing FORTRAN application
programs need to make the corresponding changes, if they
include the .i files, in order to compile with HDF4.0.
17. Limits file
A new file, limits.txt, has been added to the ftp server.
It is aimed at HDF applications programmers and defines the
upper bounds of HDF 4.0. This information is also found in the
hdf/src/hlimits.h file. Refer to the ABOUT_4.0.alpha for
historical information concerning this.
18. Pablo available
HDF4.0 supports creating an instrumented version of the HDF
library(libdf-inst.a). This library, along with the Pablo
performance data capture libraries, can be used to gather data
about I/O behavior and procedure execution times. See the top
level INSTALL file and the hdf/pablo/README.Pablo file for
further information.
19. Support for the IBM SP-2
The HDF library has been ported to run in a single SP2 node.
It does not support the parallel or distributed computing for
multiple SP-2 nodes yet.
20. Miscellaneous fixes
- To avoid conflicts with C++, internal structures' fields which
were named 'new' have been renamed.
- The maximum number of fields in a vdata now is decided by
VSFIELDMAX.
- The platform number subclass problem when an external data file
was in Little_endian format has been fixed.
- Unlimited dimension was not handled correctly by the HDF3.3r4
FORTRAN interface. This problem has been fixed in HDF4.0r1.
Changes to utilities:
--------------------
o hdf/util/ristosds
Ristosds now converts several raster images into a 3D uint8,
instead of float32, SDS.
o hdf/util/hdfls
New options have been added to support the parallel I/O
interface on CM5.
o hdf/util/hdfpack
New options have been added to support the parallel I/O
interface on CM5.
o hdf/util/hdfunpac
This is a new utility for external file handling for the
parallel I/O interface on CM5.
o mfhdf/dumper/hdp
Hdp is a new command line utility designed for quick display of
contents and data objects. It can list the contents of hdf files
at various levels with different details. It can also dump the
data of one or more specific objects in the file. See hdp.txt in
the release notes for more information.
Known Problems:
--------------
o On the IRIX4 platform, fp2hdf creates float32 and float64 values
incorrectly.
o On the SP2, the hdp command gives a false message of "Failure to
allocate space" when the hdf file has no annotations to list.
o On the C90, hdfed fails inconsistently when opening hdf files
more than once in the same hdfed session.
o Currently there is a problem in re-writing data in the middle
of compressed objects.
o VMS gives an error on the test for Little Endian float64.
o If the external element test in hdf/test/testhdf fails
and there is no subdirectory "testdir" in hdf/test/,
create one via "mkdir" and run the test again. (The
"testdir" should have been created by "make". But
the "make" in some old systems does not support the
creation commands.)
%%%4.0b2%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
ABOUT HDF4.0 Beta 2
Nov 14, 1995
CONTENTS
1. The mfhdf side library is renamed to libmfhdf.a,
versus libnetcdf.a in previous releases
2. New version of dimension record
3. New features
GR interface
Gzip library is added
Unified configuration of library
I/O performance improvement
4. New functions added
Fortran functions hxscdir and hxsdir
SDsetdimval_comp
SDisdimval_bwcomp
5. SGI Power Challenge running IRIX6.1 is now supported
6. Pablo available
7. Platforms tested
8. Changes in release notes
9. Bug fixes and Known problems
1. The mfhdf side library is renamed to libmfhdf.a, versus libnetcdf.a
in previous releases. To link a program with HDF4.0b2 libraries,
one needs four libraries, libmfhdf.a, libdf.a, libjpeg.a and libz.a
(see "Gzip library is added" in item 3 below):
cc -o myprog myprog.c -I<path of include files> \
libmfhdf.a libdf.a libjpeg.a libz.a
Note, the order of the libraries is important.
2. New version of dimension record
HDF4.0b1 and previous releases use a vgroup to represent a dimension.
The vgroup has a single field vdata with class "DimVal0.0".
The vdata has <dimension size> number of records, each record has a
fake value from 0, 1, 2 ... , (<dimension size> - 1 ). The fake values
are not really required and take a lot of space. For applications that
create large one dimensional array datasets the disk space taken by
these fake values almost double the size of the HDF file. In order to
omit the fake values, a new version of dimension vdata is proposed.
The new version uses the same structure as the old version. The only
differences are that the vdata has only 1 record with value
<dimension size> and that the vdata's class is "DimVal0.1" to
distinguish it from the old version.
No change is made in Unlimited dimensions.
See file dimval.txt in subdirectoy release_notes/ of HDF4.0b2 release
for our policy on the backward compatibility of this dimension version.
3. New features
. New with this beta release is the support for different methods of
interlacing images in memory. This feature is supported through the
GRreqlutil and GRreqimageil functions rescribed in the mf_ris.txt
document in this directory. Please note that the images are
interlaced in memory only, all images are actually written to disk
in "pixel" interlacing.
. Gzip library is added
New with this release is support for gzip "deflate" style compression
of any object in an HDF file. This is supported through the standard
compression interface function calls (HCcreate, SDsetcompress,
GRsetcompress) by using the COMP_CODE_DEFLATE parameter for the coding
type. The comp_info structure has a new member, deflate.level, which
specifies how much effort to expend trying to compress data. Values
for deflate.level must be between 1-9, with 1 being small amounts of
effort (time) and 9 being maximum effort (most time and compression),
the default value is 6.
Currently, due to our use of the gzip "zlib" library for support of
this feature, users must link with the "libz.a" library produced by
zlib. (See item1 above).
cc -o myprog myprog.c -I<path of include files> \
libmfhdf.a libdf.a libjpeg.a libz.a
Note, the order of the libraries is important.
Also, this method of compression currently has several known bugs
when used on a 64-bit architecture (DEC Alpha processors, Cray
machines, and SGI Power Challenge machines in 64-bit "mode").
. Unified configuration of library
Both sides of the library now use the same configure script and
can be configured uniformly through one makefile fragment. Please
see the top-level INSTALL file in the distribution for further
details.
. I/O performance improvement
This version of the distribution also has preliminary support for
file page buffering. Note that is a *Beta* release and is not
supported officially. As such it is is provided as is.
The file page buffering allows the file to be mapped to user memory on
a per page basis i.e a memory pool of the file. With regards to the
file system, page sizes can be allocated based on the file system
page-size or if the user wants in some multiple of the file system
page-size. This allows for fewer pages to be managed along with
accommodating the users file usage pattern. Please see the
documentation in 'release_notes/page_buf.txt'.
We have also reduced the memory requirements for several of the
internal HDF library data structures, for greater efficiency.
4. Functions added
. Fortran interface functions added for the set external path features.
They are hxscdir and hxsdir. See the man page of HXsetcreatedir(3)
and HXsetdir(3) for detail.
. SDsetdimval_comp -- sets backward compatibility mode for a dimension.
The default mode is compatible in HDF4.0b2, and will be
incompatible in HDF4.1. See the man page of SDsetdimval_comp(3)
for detail.
. SDisdimval_bwcomp(dimid) -- gets the backward compatibility mode
of a dimension. See the man page of SDisdimval_bwcomp(3) for
detail.
5. SGI Power Challenge running IRIX6.1 is now supported
Power Challenge is now supported, both in the native 64-bit and the
32-bit objects modes. Note that the Power Challenge native 64 bits
objects use 64 bits long integers, users should be careful when using
the netcdf interface. They should declare their variables as "nclong",
not "long".
6. Pablo available
This version of the distribution has support to create an
instrumented version of the HDF library(libdf-inst.a). This
library along the Pablo performance data capture libraries
can be used to gather data about I/O behaviour and procedure
execution times. Please see the documentation
release_notes/Pablo.txt in the distribution for further details.
7. Platforms tested
HDF4.0b2 has been tested on the following systems:
SunOS 4.1.3, SunOS 5.3 and 5.4(Solaris 2.3 and 2.4),
Linux_a.out, Linux_elf, SGI/IRIX5.2, SGI/IRIX5.3,
SGI Power Challenge/IRIX6.1 (32- and 64-bit), HP/UX 9.01,
IBM RS6000/AIX, Cray C90, Cray YMP, DEC alpha/UNIX (OSF),
DecStation/MIPSEL (ncdump doesn't work), Free BSD 2.0,
Solaris_x86, Convex Exemplar/HPUX, and CM5 parallel I/O.
See the INSTALL file at the top level of HDF4.0b2 for more
details.
8. Changes in release notes
The directory release_notes/ contains writeups for the alpha
and beta releases of HDF4.0. Those files can be used as temporary
documents for HDF4.0 before the official documentation is
available.
Newly added: ABOUT_4.0b2, Pablo.txt, dimval.txt, and page_buf.txt
Files changed: bug_fixed.txt and parallel_CM5.txt.
AOUBT_4.0.alpha is also included.
9. Fixes and Known problems
Problems fixed:
. To avoid conflicts with C++, internal structures' fields which
were named 'new' have been renamed.
. Maximum number of fields in a vdata now is decided by VSFIELDMAX.
. Vshow and hdp are fixed. Now they can handle as many fields
as defined by VSFIELDMAX.
. Fixed platform number subclass problem when external data file was
in Little_endian format.
. A file hdf/src/hlimits.h has been added to hold definitions for
maximum number of open files and other limits.
. Miscelianeous fixes
Known problems:
. Hfidinquire not included in binaries
. Gzip doesn't work on 64-bit machines.
. Currently there is a problem in appending data to compressed objects.
. Hfidinquire is in the source code, but it is not included in the
pre-compiled code. If your program uses Hfidinquire, you need to
re-compile libdf.a.
%%%4.0b1%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
ABOUT HDF4.0 Beta 1
July 25, 1995
CONTENTS
1. New features in the HDF4.0 Beta 1 release
2. Bugs fixed and known problems
3. Platforms tested
4. Installation of HDF4.0 Beta 1 on WindowsNT/95
5. Known problems in compilation, testing and
installation of HDF4.0b1
6. Installing without FORTRAN support
1. New features in HDF4.0 Beta 1 release
o Auto configuration
It is now possible to automatically configure and build
both the HDF library and netCDF library with one command.
See the README and the INSTALL files at the top level of
HDF4.0beta1 for detailed instructions on configuring and
installation.
o Multi-file Annotation Interface (ANxxx)
The multi-file annotation Interface is for accessing
file labels and descriptions, and object labels and
descriptions. It allows users to keep open more than
one file at a time, and to access more than one
annotation at a time. It also allows multiple labels
and multiple descriptions to be applied to an HDF object
or HDF file.
A draft of the documentation for this interface is in
./mf_anno.txt.
o Multi-file Raster Image (GRxxx) interface
The new Generic Raster (GR) interface provides a set of
functions for manipulating raster images of all kinds.
This interface allows users to keep open more than one
file at a time, and to "attach" more than one raster
image at a time. It supports a general framework
for attributes within the RIS data-model, allowing
'name = value' style metadata. It allows access to
subsamples and subsets of images. HDF4.0beta1 includes
a C interface only. The Fortran interface will be available
in the next release.
A draft of the documentation for this interface is in
./mf_ris.txt.
o New Compression Algorithms and interface
A new low-level compression interface has been added to
HDF which allows any data-object to be compressed
using a variety of algorithms. Currently only two
compression algorithms are supported: Run-Length
Encoding (RLE) and adaptive Huffman.
A draft of the documentation for this interface is in
./compression.txt
o JPEG Group v5b library
HDF Version 4.0 libraries now use v5 of the Independent
JPEG Group (IJG) JPEG file access library. For more details
about JPEG library see
./JPEG_v5b.txt
The JPEG library will need to be linked with a user's
applications whether they are compressed with JPEG or not.
For example on a SUN SPARC, if the .h files are in the
directory "incdir", and all libraries are in "libdir,"
the following command should be used to compile a
C program "myprog.c":
cc -DSUN -DHDF -Iincdir myprog.c libdir/libnetcdf.a \
libdir/libdf.a /libdir/libjpeg.a -o myprog
or
cc -DSUN -DHDF -Iincdir myprog.c -L libdir -lnetcdf \
-ldf -ljpeg -o myprog
Note that the order is important: libnetcdf.a must occur first,
then libdf.a, and then libjpeg.a.
For FORTRAN programs, use command line:
f77 -o myprogf myprogf.f libdir/libnetcdf.a \
libdir/libdf.a libdir/libjpeg.a
or
f77 -o myprogf myprogf.f -L libdir -lnetcdf -ldf -ljpeg
Note that the order is important: libnetcdf.a, then libdf.a
and then libjpeg.a.
o Compression for HDF SDS (not completely working)
Work is almost complete on the addition of two
new compression functions to the SD interface.
One function, which still has some known bugs, will
allow users to compress a scientific dataset using
any of several compression methods. Initially two
schemes, RLE encoding and an adaptive Huffman
compression algorithms, will be available.
A second function is available for storing a scientific
dataset using integers whose size is any number of bits
between 1 and 32 (instead of being restricted to 8, 16
or 32-bit sizes).
A draft of the documentation for these functions is in
./comp_SDS.txt
o External Path Handling
New functions have been added to allow applications to
specify directories to create or search for external
files. More explanation can be found in:
./external_path.txt.
o Parallel I/O for the CM5
An extension using the parallel I/O facilities on a CM5
has been added to the SDS interface. Initial tests have
resulted in about 25 MBytes/second I/O throughput using the
SDA (Scalable Disk Array) file system. The library
provides interfaces for both C* and CMF programming
languages. See:
./parallel_CM5.txt for details.
o HDF dumper
Hdp is a command line utility designed for quick
display of contents and data of HDF3.3 objects, RIS,
SDS, Vdata, and Vgroup. It can list the contents of
hdf files at various levels with different details.
It can also dump the data of one or more specific
objects in the file. See:
./hdp.txt for details.
Currently hdp works on SunOS and LINUX only.
2. Bugs fixed and known problems
Several bugs or problems, such as failure in setting
and getting scales for unlimited dimensions, missing
Fortran version of VSQxxxx functions, failure in
defining more than 36 fields in Vdatas, etc. were
fixed in this beta release. For more details about
fixed and un-fixed bugs and problems please see:
./bug_fixed.txt.
3. HDF4.0 Beta 1 has been tested on the following systems:
SunOS 4.1.3, SunOS 5.3 (Solaris 2.3), Linux, SGI/IRIX5.3,
SGI Power Challenge/IRIX6.0 (32-bit mode only), HP/UX 9.01,
IBM RS6000/AIX (C only), C3880/ConvexOS,11.0, CM5, Cray C90,
DEC alpha/OSF (C only), DecStation/MIPSEL (C only), Windows NT,
Free BSD 2.0, and Convex Exemplar/HPUX. See the INSTALL
file at the top level of HDF4.0b1 for more details.
4. Installing HDF4.0 Beta 1 on Windows NT and Windows 95
Since Windows NT, Windows '95 (Chicago) and Windows 3.1
(with the Win 32s extensions) all are designed to run
the same 32-bit code, we have decided to support only
32-bit libraries and code on the MS-Windows platform.
To build the HDF, JPEG and netCDF libraries and utilities,
follow the instructions listed in:
./install_winNT.txt.
5. Known problems in compilation,testing and installation
of HDF4.0b1:
. On SunOS, tsdmmsf.f in hdf/test/fortest fails
. On C90, mfhdf/fortran test doesn't configure correctly.
The adaptive Huffman algorithm does not work right
either. Due to this problem, when running
hdf/test/testhdf the test module comp prints out
error messages.
. On DecStation/MIPSEL, ncdump gives a segmentation fault.
. The Fortran interface has not been tested on IBM RS6000,
DecStation/MIPSEL, and Dec Alpha/OSF because a Fortran
compiler is not available on those machines in our group.
. If the external element test in hdf/test/testhdf fails
and there is no subdirectory "testdir" in hdf/test/,
create one via "mkdir" and run the test again. (The
"testdir" should have been created by "make". But
the "make" in some old systems does not support the
creation commands.)
. A bug was found in the "mfhdf.h" file late in the testing
stage. The error occurred in the CM5 parallel I/O
extension only. The fix is not included in the source
release, but it is available in the binary release for
the CM5 version. Please retrieve the fix there.
. SDsetcompress does not work correctly.
. Hdp now works on SunOS and LINUX only. Commands dumpsds,
dumpvd and dumpvg have different problems on other platforms.
See mfhdf/dumper/README for more details.
6. Installing without FORTRAN support:
. On UNIX systems without a FORTRAN system installed,
the config/mh-<sys> will need to have the 'FC' macros
defined to "NONE" for correct configuration and the
target "allnofortran" should be used to build the
distribution, instead of the target "all".
%%%4.0alpha%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
ABOUT_4.0.alpha
This file was last updated: November 8, 1994
INTRODUCTION
This is a preliminary document describing the differences
between HDF4.0 (Alpha) and HDF3.3r3. It is written for people
who already use HDF3.3r3 or earlier versions and wish to be
HDF4.0 Alpha testers. Special emphasis is given to changes
that might be required in existing code.
The files ABOUT_3.3r3, ABOUT_3.3r2 and ABOUT_3.3r1 which were
released along with previous releases contain detailed
descriptions of HDF3.3. Those files can be found in this
directory. First-time HDF users are encouraged to read the FAQ
file in directory HDF/ for more information about HDF and where
to get HDF documentation.
If you have any questions or comments, please send them to:
hdfhelp@ncsa.uiuc.edu.
Contents
1. Changes in include file names for FORTRAN programs
2. New features supported by HDF4.0
ANSI C only
n-bit SDS
Reading CDF files
Parallel I/O interface on CM5
Installing HDF Libraries With CM5 Parallel IO Extension
3. Changes in HDF utilities
hdp -- HDF dumper
ristosds
hdfls
hdfpack
hdfunpac
4. Platforms tested
5. Limits of the current release
1. Changes in include file names for FORTRAN programs
In hdf/ there are two files for FORTRAN programs to include
the values and functions defined in HDF. They were
originally named as constant.i and dffunct.i. The extension .i
causes problems on some machines since *.i is used by cc as
an "intermediate" file produced by the cpp preprocessor. In
HDF 4.0 dffunct.i is changed to dffunct.inc, and constant.i is
changed to hdf.inc. Users' existing FORTRAN application
programs need to make the corresponding changes, if they
include the .i files, in order to compile with HDF4.0.
2. New Features supported by HDF4.0
ANSI C only
As previously noted in the HDF newsletters, the next
major release of the HDF library will compile only with
ANSI C compilers. Backward compatibility will be
provided through an ANSI->K&R filter which will need to
be run on each source file in order to convert the ANSI
style code into K&R style code. Currently the entire HDF
library has been converted to ANSI code, but the filter
is not yet in place. Future alpha releases may have the
code filter in place, but it will definitely be in place
for the first beta release. This shift to ANSI C
compliance has been accompanied by a large cleanup in
the source code. An attempt has been made to remove all
warnings and informational messages that the compilers
on supported platforms occasionally emit, but this may
not be completely clean for all user sites.
n-bit SDS
Support for n-bit integer data has been incorporated
into this release of the HDF library. The n-bit support
is currently incorporated into the call to
SDsetnbitdataset, future releases may incorporate high
level access through the DFSD interface also. Access to
the data stored in an n-bit data item is transparent to
the calling program.
For example to store an unsigned 12-bit integer (which
is represented unpacked in memory as an unsigned 16-bit
integer), with no sign extension or bit filling and
which starts at bit 14 (counting from the right with bit
zero being the lowest) the following setup & call would
be appropriate:
intn sign_ext = FALSE;
intn fill_one = FALSE;
intn start_bit= 14;
intn bit_len = 12;
SDsetnbitdataset(sds_id,start_bit,bit_len,sign_ext,fill_one);
Further reads and writes to this dataset would
transparently convert the 16-bit unsigned integers from
memory into 12-bit unsigned integers stored on disk. The
corresponding FORTRAN function name is sfsnbit which
takes the same parameters in the same order.
A breakdown of the parameters to the SDsetnbitdataset
call is as follows:
int32 sds_id - The id of a scientific dataset returned from
SDcreate or SDselect. intn start_bit - This value
determines the bit position of the highest end of the
n-bit data to write out. Bits in all number- types are
counted from the right starting with 0. For example, in
the following bit data, "01111011", bits 2 and 7 are set
to 0 and all the other bits are set to one.
intn bit_len - The number of bits in the n-bit data to
write, including the starting bit, counting towards the
right (i.e. lower bit numbers). For example, starting at
bit 5 and writing 4 bits from the following bit data,
"01111011", would write out the bit data, "1110", to the
dataset on disk.
intn sign_ext - Whether to use the top bit of the n-bit
data to sign-extend to the highest bit in the memory
representation of of the data. For example, if 9-bit
signed integer data is being extracted from bits 17-25
(nt=DFNT_INT32, start_bit=25, bit_len=9, see below for
full information about start_bit & bit_len parameters)
and the bit in position 25 is a 1, then when the data is
read back in from the disk, bits 26-31 will be set to a
1, otherwise bit 25 will be a zero and bits 26-31 will
be set to 0. This bit-filling takes higher precedence
(i.e. is performed after) the fill_one (see below)
bit-filling.
intn fill_one - Whether to fill the "background" bits with
1's or 0's. The "background" bits of a n-bit dataset are
those bits in the in-memory representation which fall
outside of the actual n-bit field stored on disk. For
example, if 5 bits of an unsigned 16-bit integer
(in-memory) dataset located in bits 5-9 are written to
disk with the fill_one parameter set to TRUE (or 1),
then when the data is read back into memory at a future
time, bits 0-4 and 10-15 would be set to 1. If the same
5-bit data was written with a fill_one value of FALSE
(or 0), then bits 0-4 and 10-15 would be set to 0. This
setting has a lower precedence (i.e. is performed first)
than the sign_ext setting. For example, using the
sign_ext example above, bits 0-16 and 26-31 will first
be set to either 1 or 0 based on the fill_one parameter,
and then bits 26-31 will be set to 1 or 0 based on
bit-25's value.
Reading CDF files
With HDF 4.0 limited support for reading CDF files was
added to the library. This support is still somewhat in
the development stage and is therefore limited.
To begin with, unlike the netCDF merger, the CDF API is
not supported. Rather, the SD and netCDF APIs can be
used to access information pulled out of CDF files.
The type of files supported are limited to CDF 2.X
files. The header information is different between CDF
1.X and 2.X files. In addition, all of the files must be
stored as single-file CDFs in network encoding.
If there is user demand, and support, the types of CDF
files readable may be increased in the future.
Parallel I/O interface on CM5
An extension using the parallel IO in CM5 is added to
the SDS interface. Initial tests have resulted in about
25 MBytes/second IO throughput using the SDA (Scalable
Disk Array) file system. The library provides interfaces
for both C* and CMF programming languages. Read the
section "Installing HDF Libraries With CM5 Parallel IO
Extension" below for specific installation instructions.
Users will find some examples in the directory
mfhdf/CM5/Examples. Please send comments, bugs reports,
etc. to acheng@ncsa.uiuc.edu.
The parallel I/O interface stores scientific datasets in
external files. New options have been added to hdfls and
hdfpack to handle them. A new utility program, hdfunpac,
is created for external files handling too. See the man
pages for details.
Installing HDF Libraries With CM5 Parallel IO Extension
The current alpha version requires two major steps to
install the HDF libraries (libdf.a and libnetcdf.a). Works
are in progress to make it simpler in the production
release. Bear with us for now.
1) Compile and install the ordinary HDF libraries,
include files and utilities according to the
instructions for a Sun Microsystem machine.
2) To make the HDF library with CM5 parallel IO
extension: There are two new libraries, libdfcm5.a and
libnetcdfcm5.a that are similar to libdf.a and
libnetcdf.a.
For libdf.a
cd hdf
cp MAKE.CM5 Makefile
cp src/Makefile.CM5 src/Makefile
make libdf # create the parallel IO libdf.a
# to install it in /usr/local/lib
cp src/libdf.a /usr/local/lib/libdfcm5.a
ranlib /usr/local/lib/libdfcm5.a
For libnetcdf.a
cd mfhdf
# edit CUSTOMIZE to use "gcc" as the CC compiler
# and add "-DCM5" to the CFLAGS variable.
./configure
(cd libsrc; make ) # compile the library
# to install it in /usr/local/lib
cp libsrc/libnetcdf.a /usr/local/lib/libnetcdfcm5.a
ranlib /usr/local/lib/libnetcdfcm5.a
3. Changes in HDF utilities
hdp -- HDF dumper
A new utility hdp is under development to list contents
of HDF files and to dump data of HDF objects. A
prototype is included in HDF4.0 Alpha for users to play
with and comment on. Development will continue based on
users' feedback. More information is contained in
HDF/HDF4.0.alpha/mfhdf/dumper/README.
ristosds
Ristosds now converts several raster images into a 3D
uint8, instead of float32, SDS.
hdfls
New options to recognize external elements.
hdfpack
New options to pack external elements back into the main
file.
hdfunpac
New utility program to unpack scientific datasets to
external elements. Can be used to prepare for CM5
parallel IO access.
4. HDF 4.0 Alpha has been tested on the following machines
Platform 'base library' HDF/netCDF
---------------------------------------------------------------
Sun4/SunOs X X
Sun4/SOLARIS X X
IBM/RS6000 X X
SGI/IRIX4 X X
Convex/ConvexOS * X X
Cray Y-MP/UNICOS X X
Cray/C90 X X
NeXT/NeXTSTEP X X
HP/UX 9.01 X X
DecStation/MIPSEL X X
IBM PC - MSDOS ** ***
IBM PC - Windows 3.1 ** ***
IBM PC - Windows NT X X
DEC Alpha/OSF X X
CM5/ X X
Fujitsu VP/UXPM X
Intel i860 X
Mac/MacOS
VMS
* When compiling the mfhdf section of the library on a Convex3 you will
need to set the environment variable 'MACHINE' to 'c3' before running
the configure script.
** There is no FORTRAN support for either PC version of HDF4.0 Alpha
*** The netCDF half of the HDF/netCDF merger is not working correctly,
but the multi-file SD interface is working correctly.
5. Limits of the current release
Sometimes it is important for HDF users to be aware of
certain limits in using HDF files and HDF libraries. This
section is aimed at HDF applications programmers and
reflects upperbounds as of HDF 4.0.
Limits that are #define'd are fully capitalized and the
file where the symbol is defined is given in parentheses at
the end of the sentence. If the #define's are changed in
order to meet the needs of an application, it is important
to make sure that all other users, who would share the HDF
library and the hdf files of the application, are aware of
the changes.
If a limit has no #define, the size of the maximum storage
allocated for that item is given; it would, generally,
require a large amount of modification of the HDF library
to change.
If a limit is listed as a number type (e.g. int16) then it
refers to the largest number that can be represented using
that type. That is:
int16 -- 32,767
int32 -- 2,147,483,647.
H-Level Limits
--------------
MAX_FILE files open at a single time (hfile.h)
MAX_ACC access records open at a single time (hfile.h)
int16 total tags (fixed)
int32 max length and offset of an element in an HDF file (fixed)
Vgroup Limits
-------------
MAX_VFILE vset files open at a single time (hdf.h)
int16 elements in a Vgroup (fixed)
VGNAMELENMAX max length of a Vgroup name or class (vg.h)
Vdata Limits
------------
MAX_VFILE vset files open at a single time (hdf.h)
VSFIELDMAX fields in a Vdata (hdf.h)
FIELDNAMELENMAX characters in a single field name (hdf.h)
MAX_ORDER max field order in a Vdata (hdf.h)
VSNAMELENMAX max length of a Vdata name or class (hdf.h)
int16 max width in bytes of a Vdata record. (fixed)
Vdatas can have a maximum field width of MAX_FIELD_SIZE bytes. (hdf.h)
Raster Images
-------------
int32 width or height of a raster image. (fixed)
SD Limits
---------
MAX_VAR_DIMS dimensions per dataset (defined in netcdf.h
included by mfhdf.h)
int32 maximum dimension length (fixed)
MAX_NC_ATTRS attributes for a given object (defined in netcdf.h
included by mfhdf.h)
MAX_NC_NAME maximum length of a name of a dataset
(defined in netcdf.h included by mfhdf.h)
Other Conventions / Issues
--------------------------
Some utility programs (e.g. ncgen) expect dataset names to be
composed of only alphanumeric, '-' and '_' characters.
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