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/*
* libics: Image Cytometry Standard file reading and writing.
*
* Copyright 2015-2017:
* Scientific Volume Imaging Holding B.V.
* Hilversum, The Netherlands.
* https://www.svi.nl
*
* Copyright (C) 2000-2013, 2016 Cris Luengo and others
*
* Large chunks of this library written by
* Bert Gijsbers
* Dr. Hans T.M. van der Voort
* And also Damir Sudar, Geert van Kempen, Jan Jitze Krol,
* Chiel Baarslag and Fons Laan.
*
* This library is free software; you can redistribute it and/or
* modify it under the terms of the GNU Library General Public
* License as published by the Free Software Foundation; either
* version 2 of the License, or (at your option) any later version.
*
* This library is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
* Library General Public License for more details.
*
* You should have received a copy of the GNU Library General Public
* License along with this library; if not, write to the Free
* Software Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA.
*/
/*
* FILE : libics_test.c
*
* The following library functions are contained in this file:
*
* IcsPrintIcs()
* IcsPrintError()
*/
#include <stdlib.h>
#include <stdio.h>
#include "libics_intern.h"
#include "libics_test.h"
void IcsPrintIcs (ICS const* ics)
{
int p, ii;
Ics_Format Format;
int Sign;
size_t Bits;
char* s;
IcsGetPropsDataType (ics->imel.dataType, &Format, &Sign, &Bits);
p = ics->dimensions;
printf ("Version: %d\n", ics->version);
printf ("FileMode: %d\n", ics->fileMode);
printf ("Filename: %s\n", ics->filename);
printf ("SrcFile: %s\n", ics->srcFile);
printf ("SrcOffset: %ld\n", (long int)ics->srcOffset);
printf ("Data: %p\n", ics->data);
printf ("DataLength: %ld\n", (long int)ics->dataLength);
printf ("Parameters: %d\n", ics->dimensions+1);
printf ("Order: bits ");
for (ii=0; ii<p; ii++)
printf ("%s ", ics->dim[ii].order);
printf ("\n");
printf ("Sizes: %d ", (int)Bits);
for (ii=0; ii<p; ii++)
printf ("%lu ", (unsigned long) ics->dim[ii].size);
printf ("\n");
printf ("Sigbits: %d\n", (int)ics->imel.sigBits);
printf ("Origin: %f ", ics->imel.origin);
for (ii=0; ii<p; ii++)
printf ("%f ", ics->dim[ii].origin);
printf ("\n");
printf ("Scale: %f ", ics->imel.scale);
for (ii=0; ii<p; ii++)
printf ("%f ", ics->dim[ii].scale);
printf ("\n");
printf ("Labels: intensity ");
for (ii=0; ii<p; ii++)
printf ("%s ", ics->dim[ii].label);
printf ("\n");
printf ("Units: %s ", ics->imel.unit);
for (ii=0; ii<p; ii++)
printf ("%s ", ics->dim[ii].unit);
printf ("\n");
switch (Format) {
case IcsForm_real:
s = "real";
break;
case IcsForm_complex:
s = "complex";
break;
default:
s = "integer";
}
printf ("Format: %s\n", s);
printf ("Sign: %s\n", Sign?"signed":"unsigned");
printf ("SCIL_TYPE: %s\n", ics->scilType);
printf ("Coordinates: %s\n", ics->coord);
switch (ics->compression) {
case IcsCompr_uncompressed:
s = "uncompressed";
break;
case IcsCompr_compress:
s = "compress";
break;
case IcsCompr_gzip:
s = "gzip";
break;
default:
s = "unknown";
}
printf ("Compression: %s (level %d)\n", s, ics->compLevel);
printf ("Byteorder: ");
for (ii=0; ii<ICS_MAX_IMEL_SIZE; ii++)
if (ics->byteOrder[ii] != 0)
printf ("%d ", ics->byteOrder[ii]);
else
break;
printf ("\n");
printf ("BlockRead: %p\n", ics->blockRead);
if (ics->blockRead != NULL) {
Ics_BlockRead* br = (Ics_BlockRead*)ics->blockRead;
printf (" DataFilePtr: %p\n", (void*)br->dataFilePtr);
#ifdef ICS_ZLIB
printf (" ZlibStream: %p\n", br->zlibStream);
printf (" ZlibInputBuffer: %p\n", br->zlibInputBuffer);
#endif
}
printf ("Sensor data: \n");
printf (" Sensor type:");
for (ii=0; ii< ics->sensorChannels; ii++)
printf(" %s", ics->type[ii]);
printf("\n");
printf (" Sensor model: %s\n", ics->model);
printf (" SensorChannels: %d\n", ics->sensorChannels);
printf (" RefrInxMedium: %f\n", ics->refrInxMedium);
printf (" NumAperture: %f\n", ics->numAperture);
printf (" RefrInxLensMedium: %f\n", ics->refrInxLensMedium);
printf (" PinholeSpacing: %f\n", ics->pinholeSpacing);
printf (" PinholeRadius: ");
for (ii = 0; ii < ICS_MAX_LAMBDA && ii < ics->sensorChannels; ++ii) {
printf ("%f ", ics->pinholeRadius[ii]);
}
printf ("\n");
printf (" LambdaEx: ");
for (ii = 0; ii < ICS_MAX_LAMBDA && ii < ics->sensorChannels; ++ii) {
printf ("%f ", ics->lambdaEx[ii]);
}
printf ("\n");
printf (" LambdaEm: ");
for (ii = 0; ii < ICS_MAX_LAMBDA && ii < ics->sensorChannels; ++ii) {
printf ("%f ", ics->lambdaEm[ii]);
}
printf ("\n");
printf (" ExPhotonCnt: ");
for (ii = 0; ii < ICS_MAX_LAMBDA && ii < ics->sensorChannels; ++ii) {
printf ("%d ", ics->exPhotonCnt[ii]);
}
printf ("\n");
printf ("History Lines:\n");
if (ics->history != NULL) {
Ics_History* hist = (Ics_History*)ics->history;
for (ii = 0; ii < hist->nStr; ii++) {
if (hist->strings[ii] != NULL) {
printf (" %s\n", hist->strings[ii]);
}
}
}
}
void IcsPrintError (Ics_Error error)
{
char const* msg;
msg = IcsGetErrorText (error);
printf ("libics error: %s.\n", msg);
}
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