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/* Copyright (c) 2009 Peter Troshin
*
* JAva Bioinformatics Analysis Web Services (JABAWS) @version: 1.0
*
* This library is free software; you can redistribute it and/or modify it under the terms of the
* Apache License version 2 as published by the Apache Software Foundation
*
* This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without
* even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache
* License for more details.
*
* A copy of the license is in apache_license.txt. It is also available here:
* @see: http://www.apache.org/licenses/LICENSE-2.0.txt
*
* Any republication or derived work distributed in source code form
* must include this copyright and license notice.
*/
package compbio.data.sequence;
import javax.xml.bind.annotation.XmlAccessType;
import javax.xml.bind.annotation.XmlAccessorType;
import compbio.util.annotation.Immutable;
/**
* Alignment metadata e.g. method/program being used to generate the alignment
* and its parameters
*
* @author pvtroshin
*
* @version 1.0 September 2009
*/
@Immutable
@XmlAccessorType(XmlAccessType.FIELD)
public class AlignmentMetadata {
private Program program;
private char gapchar;
private AlignmentMetadata() {
// Default no args constructor required for JAXB
}
public AlignmentMetadata(Program program, char gapchar) {
this.program = program;
this.gapchar = gapchar;
}
public Program getProgram() {
return program;
}
public char getGapchar() {
return gapchar;
}
@Override
public boolean equals(Object obj) {
if (obj == null) {
return false;
}
if (!(obj instanceof AlignmentMetadata)) {
return false;
}
AlignmentMetadata alm = (AlignmentMetadata) obj;
if (alm.getProgram() != this.getProgram()) {
return false;
}
if (alm.getGapchar() != this.getGapchar()) {
return false;
}
return true;
}
@Override
public int hashCode() {
return getProgram().hashCode() * getGapchar() * 13;
}
}
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