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/* Copyright (c) 2011 Peter Troshin
*
* JAva Bioinformatics Analysis Web Services (JABAWS) @version: 2.0
*
* This library is free software; you can redistribute it and/or modify it under the terms of the
* Apache License version 2 as published by the Apache Software Foundation
*
* This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without
* even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache
* License for more details.
*
* A copy of the license is in apache_license.txt. It is also available here:
* @see: http://www.apache.org/licenses/LICENSE-2.0.txt
*
* Any republication or derived work distributed in source code form
* must include this copyright and license notice.
*/
package compbio.data.sequence;
/**
* Enumeration listing of all the supported methods.
*
* @author Agnieszka Golicz & Peter Troshin
*/
public enum ConservationMethod {
KABAT, JORES, SCHNEIDER, SHENKIN, GERSTEIN, TAYLOR_GAPS, TAYLOR_NO_GAPS, ZVELIBIL, KARLIN, ARMON, THOMPSON, NOT_LANCET, MIRNY, WILLIAMSON, LANDGRAF, SANDER, VALDAR, SMERFS;
public static ConservationMethod getMethod(String meth) {
meth = meth.trim().toLowerCase();
if (meth.equalsIgnoreCase(KABAT.toString())) {
return KABAT;
}
if (meth.equalsIgnoreCase(JORES.toString())) {
return JORES;
}
if (meth.equalsIgnoreCase(SCHNEIDER.toString())) {
return SCHNEIDER;
}
if (meth.equalsIgnoreCase(SHENKIN.toString())) {
return SHENKIN;
}
if (meth.equalsIgnoreCase(GERSTEIN.toString())) {
return GERSTEIN;
}
if (meth.equalsIgnoreCase(TAYLOR_GAPS.toString())) {
return TAYLOR_GAPS;
}
if (meth.equalsIgnoreCase(TAYLOR_NO_GAPS.toString())) {
return TAYLOR_NO_GAPS;
}
if (meth.equalsIgnoreCase(ZVELIBIL.toString())) {
return ZVELIBIL;
}
if (meth.equalsIgnoreCase(KARLIN.toString())) {
return KARLIN;
}
if (meth.equalsIgnoreCase(ARMON.toString())) {
return ARMON;
}
if (meth.equalsIgnoreCase(THOMPSON.toString())) {
return THOMPSON;
}
if (meth.equalsIgnoreCase(NOT_LANCET.toString())) {
return NOT_LANCET;
}
if (meth.equalsIgnoreCase(MIRNY.toString())) {
return MIRNY;
}
if (meth.equalsIgnoreCase(WILLIAMSON.toString())) {
return WILLIAMSON;
}
if (meth.equalsIgnoreCase(LANDGRAF.toString())) {
return LANDGRAF;
}
if (meth.equalsIgnoreCase(SANDER.toString())) {
return SANDER;
}
if (meth.equalsIgnoreCase(VALDAR.toString())) {
return VALDAR;
}
if (meth.equalsIgnoreCase(SMERFS.toString())) {
return SMERFS;
}
return null;
}
}
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