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/* Copyright (c) 2009 Peter Troshin
*
* JAva Bioinformatics Analysis Web Services (JABAWS) @version: 1.0
*
* This library is free software; you can redistribute it and/or modify it under the terms of the
* Apache License version 2 as published by the Apache Software Foundation
*
* This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without
* even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache
* License for more details.
*
* A copy of the license is in apache_license.txt. It is also available here:
* @see: http://www.apache.org/licenses/LICENSE-2.0.txt
*
* Any republication or derived work distributed in source code form
* must include this copyright and license notice.
*/
package compbio.metadata;
import java.net.MalformedURLException;
import java.util.ArrayList;
import java.util.Collections;
import java.util.HashSet;
import java.util.List;
import java.util.Set;
import java.util.TreeSet;
import javax.xml.bind.ValidationException;
import javax.xml.bind.annotation.XmlAccessType;
import javax.xml.bind.annotation.XmlAccessorType;
import javax.xml.bind.annotation.XmlElement;
import compbio.util.SysPrefs;
import compbio.util.Util;
/**
* A single value containing an option supported by the web service e.g.
* seqType=protein. Where seqType is a optionName and protein is one of
* possibleValues
*
* @see Option
* @see Argument
*
* @author pvtroshin
*
* @version 1.0 November 2009
*/
@XmlAccessorType(XmlAccessType.FIELD)
public class Parameter<T> extends Option<T> {
@XmlElement
Set<String> possibleValues = new HashSet<String>();
ValueConstrain validValue;
private Parameter() {
// JAXB noargs const
}
public Parameter(String name, String description) {
super(name, description);
}
public ValueConstrain getValidValue() {
return validValue;
}
public void setValidValue(ValueConstrain validValue) {
if (validValue == null) {
throw new NullPointerException("ValueConstrain is expected!");
}
this.validValue = validValue;
}
@Override
public String toString() {
String value = super.toString();
if (validValue != null) {
value += validValue.toString();
}
if (!this.possibleValues.isEmpty()) {
Set<String> sortedPosval = new TreeSet<String>(this.possibleValues);
value += "POSSIBLE VALUES:" + SysPrefs.newlinechar;
for (String val : sortedPosval) {
value += val + SysPrefs.newlinechar;
}
}
return value;
}
@Override
public String toCommand(String nameValueSeparator) {
if (nameValueSeparator == null) {
throw new NullPointerException("Name value separator is expected!");
}
return getOptionName() + nameValueSeparator + getValue();
}
@Override
public boolean equals(Object obj) {
if (!super.equals(obj)) {
return false;
}
Parameter<?> objp = null;
if (obj instanceof Parameter<?>) {
objp = (Parameter<?>) obj;
} else {
return false;
}
if (objp.possibleValues.size() != this.possibleValues.size()) {
return false;
}
int matchCount = 0;
for (String pv : objp.possibleValues) {
if (Util.isEmpty(pv)) {
continue;
}
for (String thispv : this.possibleValues) {
if (pv.equals(thispv)) {
matchCount++;
break;
}
}
}
if (matchCount != objp.possibleValues.size()) {
return false;
}
return true;
}
/**
* List is more convenient to work with
*
* @return List of String
*/
@Override
public List<String> getPossibleValues() {
return new ArrayList<String>(possibleValues);
}
public void setPossibleValues(Set<String> possibleValues) {
this.possibleValues = new HashSet<String>(possibleValues);
}
public Set<String> addPossibleValues(String... value) {
for (String v : value) {
this.possibleValues.add(v);
}
return this.possibleValues;
}
@Override
public int hashCode() {
int code = super.hashCode();
if (possibleValues != null) {
code += possibleValues.hashCode();
}
return code;
}
@Override
public void setOptionNames(Set<String> optionName) {
if (optionName.size() != 1) {
throw new IllegalArgumentException(
"Parameter must have a single option name! But given "
+ optionName.size() + " names: " + optionName);
}
super.setOptionNames(optionName);
}
@Override
public Set<String> addOptionNames(String... value) {
throw new UnsupportedOperationException(
"Parameter must have only one optionName! If you setting the only name that use setOptionName instead");
}
public String getOptionName() {
assert optionNames.size() == 1;
return optionNames.iterator().next();
}
public void setOptionName(String optionName) {
assert !Util.isEmpty(optionName);
setOptionNames(Collections.singleton(optionName));
}
String getValue() {
if (this.possibleValues.size() == 1) {
return this.possibleValues.iterator().next();
}
return getDefaultValue();
}
@Override
void validate() throws ValidationException {
super.validate();
if (validValue == null) {
if (this.possibleValues.isEmpty()) {
throw new ValidationException(
"No possible values defined for parameter: " + this);
}
if (this.possibleValues.size() > 1
&& Util.isEmpty(getDefaultValue())) {
throw new ValidationException(
"Multiple possible values are defined but no default value for parameter: "
+ this);
}
} else {
if (Util.isEmpty(getDefaultValue())) {
throw new ValidationException(
"Default value is not defined for numeric parameter! "
+ this);
}
validValue.checkValue(getDefaultValue());
}
}
boolean isValidValue(String value) {
assert !Util.isEmpty(value);
return Option.valueExist(value, getPossibleValues());
}
@Override
public void setDefaultValue(String defaultVal)
throws WrongParameterException {
// If valid value constrain is not defined, then possible values must
// be, and they must contain the value which is
// about to be set!
if (validValue == null) {
if (getPossibleValues().isEmpty()) {
throw new IllegalStateException(
"Attempting to set default value for parameter: "
+ this
+ " Without possible values! Please define possible value first!");
}
if (!isValidValue(defaultVal)) {
throw new WrongParameterException(
"Attempting to set illegal value '" + defaultVal
+ "' for the parameter: " + this);
}
} else {
try {
validValue.checkValue(defaultVal);
} catch (IndexOutOfBoundsException e) {
throw new WrongParameterException(
"Attempting to set default value outside boundaries defined by the constraint: "
+ validValue + "\n For parameter: " + this);
}
}
this.defaultValue = defaultVal;
}
}
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